mRNA_P-wetherbeei_contig12102.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12102.1.1
Unique NamemRNA_P-wetherbeei_contig12102.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12102.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12102contigP-wetherbeei_contig12102:1140..2042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size763
Hectar predicted targeting categoryother localisation
Exons2
Cds size687
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185938.057029-UTR-P-wetherbeei_contig12102:1139..12141683185938.057029-UTR-P-wetherbeei_contig12102:1139..1214Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12102 1140..1214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185938.0658484-CDS-P-wetherbeei_contig12102:1214..15871683185938.0658484-CDS-P-wetherbeei_contig12102:1214..1587Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12102 1215..1587 +
1683185938.0729158-CDS-P-wetherbeei_contig12102:1728..20421683185938.0729158-CDS-P-wetherbeei_contig12102:1728..2042Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12102 1729..2042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12102.1.1prot_P-wetherbeei_contig12102.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12102 1215..2042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12102.1.1

>prot_P-wetherbeei_contig12102.1.1 ID=prot_P-wetherbeei_contig12102.1.1|Name=mRNA_P-wetherbeei_contig12102.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=229bp
MEHSLLVDDVVSQVPLSSDDAFSSKFDGDFESRSQKNVMLPRQSSCSSST
YSDSIGIGAHGKGRKGSQLGLLAHRPRQLDLESSNSPIRAGDAGTGSSAL
LHKETKSMDPLHDGATYSKNEETRRDTEILAALASVIAAVHTALARCKSG
SLHQPGASTAAAAGNPSFADLTLSRAASLCRRVWLLAAEGADARRLLAAA
GACEAVAAVLLAAPAAGETQMEGLRAVTN
back to top

mRNA from alignment at P-wetherbeei_contig12102:1140..2042+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12102.1.1 ID=mRNA_P-wetherbeei_contig12102.1.1|Name=mRNA_P-wetherbeei_contig12102.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=903bp|location=Sequence derived from alignment at P-wetherbeei_contig12102:1140..2042+ (Phaeothamnion wetherbeei SAG_119_79)
GCACGTCTTATCCTACGAAGCTTATCCTAGAACGAGCGCGGTGCGCTTCC
ACGAATCGGCATCGCCAAGAAGGATATGGAACACTCGTTGCTCGTAGACG
ACGTCGTCAGTCAGGTCCCGCTTTCGTCTGATGACGCATTCTCATCGAAG
TTTGACGGCGACTTCGAGTCTCGGTCGCAAAAAAATGTCATGCTGCCGAG
ACAGAGCAGCTGCAGCAGCAGCACCTACAGCGACAGCATCGGAATCGGCG
CCCACGGAAAGGGTAGGAAAGGAAGCCAGCTGGGTCTTCTCGCGCATCGA
CCCCGCCAGCTGGATTTGGAGTCCTCCAACAGCCCCATTAGGGCTGGCGA
CGCTGGCACCGGATCATCAGCCCTTCTACACAAGGAGACCAAGTCAATGG
ATCCGCTGCACGACGGTGCAACTTACAGCAAAAACGAAGAAACGCGACGT
GAGGAATGCGTCTTTCTAGCTTCTGTGGCAGCGGACGAGCAAAGTCGTCA
AAGGGAAACCAAAACCCGAAGGAAAAAAAAGCCGCAATATCATGTTACCA
TTCACTTTCCATGCTTTCCGGTGCTCTCTTCTCTTGCAGGAGATACAGAA
ATCCTGGCGGCACTAGCCTCCGTAATCGCCGCCGTGCACACGGCGCTGGC
GCGCTGCAAAAGTGGCTCCCTCCACCAACCTGGTGCCTCAACAGCAGCCG
CCGCCGGCAACCCTTCCTTCGCAGATTTGACTCTCTCTAGGGCCGCCTCC
CTCTGTCGGCGCGTCTGGTTGCTGGCCGCGGAAGGGGCGGACGCCCGTCG
ACTGCTGGCGGCGGCGGGAGCTTGCGAGGCAGTGGCTGCTGTGCTCTTGG
CAGCGCCGGCTGCAGGCGAAACGCAAATGGAAGGACTCCGCGCGGTGACG
AAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12102:1140..2042+

>mRNA_P-wetherbeei_contig12102.1.1 ID=mRNA_P-wetherbeei_contig12102.1.1|Name=mRNA_P-wetherbeei_contig12102.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=687bp|location=Sequence derived from alignment at P-wetherbeei_contig12102:1140..2042+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAACACTCGTTGCTCGTAGACGACGTCGTCAGTCAGGTCCCGCTTTC
GTCTGATGACGCATTCTCATCGAAGTTTGACGGCGACTTCGAGTCTCGGT
CGCAAAAAAATGTCATGCTGCCGAGACAGAGCAGCTGCAGCAGCAGCACC
TACAGCGACAGCATCGGAATCGGCGCCCACGGAAAGGGTAGGAAAGGAAG
CCAGCTGGGTCTTCTCGCGCATCGACCCCGCCAGCTGGATTTGGAGTCCT
CCAACAGCCCCATTAGGGCTGGCGACGCTGGCACCGGATCATCAGCCCTT
CTACACAAGGAGACCAAGTCAATGGATCCGCTGCACGACGGTGCAACTTA
CAGCAAAAACGAAGAAACGCGACGAGATACAGAAATCCTGGCGGCACTAG
CCTCCGTAATCGCCGCCGTGCACACGGCGCTGGCGCGCTGCAAAAGTGGC
TCCCTCCACCAACCTGGTGCCTCAACAGCAGCCGCCGCCGGCAACCCTTC
CTTCGCAGATTTGACTCTCTCTAGGGCCGCCTCCCTCTGTCGGCGCGTCT
GGTTGCTGGCCGCGGAAGGGGCGGACGCCCGTCGACTGCTGGCGGCGGCG
GGAGCTTGCGAGGCAGTGGCTGCTGTGCTCTTGGCAGCGCCGGCTGCAGG
CGAAACGCAAATGGAAGGACTCCGCGCGGTGACGAAC
back to top