mRNA_P-wetherbeei_contig12034.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12034.2.1
Unique NamemRNA_P-wetherbeei_contig12034.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12034.2.1 vs. uniprot
Match: A0A2S5MUP8_HYPSQ (Secretion protein HlyD n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A2S5MUP8_HYPSQ)

HSP 1 Score: 295 bits (755), Expect = 2.920e-96
Identity = 161/263 (61.22%), Postives = 208/263 (79.09%), Query Frame = 1
Query:   25 PTPATAWIAAAPGRVEPRNGEIRIGTPILGRVIEVLAGVGASVEDGELLVRLDDDEARARMAAAESEAGARRQERDRLPMTAGREDVRRAEDAVYAAERGVTGARFELDFAQAARRKSTGTEQNVRAAKRRLDESYDRLQRERLSYAAAQAKPNVPPPSRAESAVSAGRADVAIAEAILDKTRIRAPAAGKVLQQQAKLGEIVGPSPEQPLVVIGDVGTMRVRAELDEADVAKVRIGQKAFVRSQSYPGREFEGTVVRIAPTL 813
            P    AWIAAAPGRVEP++GEIRIGT ILGRV +V   V   VE+GELLV+LDD EARAR+ +AE++A A R+ER++    +GREDVR+AEDA+Y+AER VTGAR ELD A  A+R + G++Q V  A++RL E+ +RL+RERL++  AQ+K N+P PS AESAVSA R +V +AEA+LDKTRIRAP  G  LQ  AK+GEIV PSP+ PLVV+GD+ ++RV+AE+DE D++K+ +GQK FVRS S+PG+EFEGTV  +APTL
Sbjct:   37 PVTEVAWIAAAPGRVEPKSGEIRIGTGILGRVTKVHVAVDDQVEEGELLVQLDDAEARARLTSAETQAEALREEREKA-FASGREDVRKAEDAIYSAERAVTGARIELDGALIAKRTAGGSDQAVTEARKRLTEANERLERERLAFIRAQSKANLPAPSSAESAVSAARTEVRMAEALLDKTRIRAPQTGTALQVNAKVGEIVAPSPDAPLVVMGDMSSIRVKAEVDEGDISKITVGQKVFVRSLSFPGKEFEGTVASLAPTL 298          
BLAST of mRNA_P-wetherbeei_contig12034.2.1 vs. uniprot
Match: A0A7C4TQN0_9HYPH (HlyD family efflux transporter periplasmic adaptor subunit n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TQN0_9HYPH)

HSP 1 Score: 293 bits (751), Expect = 1.300e-95
Identity = 158/261 (60.54%), Postives = 205/261 (78.54%), Query Frame = 1
Query:   31 PATAWIAAAPGRVEPRNGEIRIGTPILGRVIEVLAGVGASVEDGELLVRLDDDEARARMAAAESEAGARRQERDRLPMTAGREDVRRAEDAVYAAERGVTGARFELDFAQAARRKSTGTEQNVRAAKRRLDESYDRLQRERLSYAAAQAKPNVPPPSRAESAVSAGRADVAIAEAILDKTRIRAPAAGKVLQQQAKLGEIVGPSPEQPLVVIGDVGTMRVRAELDEADVAKVRIGQKAFVRSQSYPGREFEGTVVRIAPTL 813
            P   WIAAAPG+VEP++GEI IGT + GR+ EVL  V   VE GELL+RLDD EARAR+AAAE+EA  R+QERD  P  AGREDVRRAEDAV+++ER +TGARF+LD + A RR  T TEQ +  ++RR  ++ DRLQR+RL+ A A A+ NVPPPSR ES +SA RA+VA+AEA+LDKTRIR+P +G V Q  AK+GEIV P+ EQPL+V+GD+  +RV+AE+DE D +K+++GQ+ FV+S S+PG+EFEG V  +AP+L
Sbjct:   40 PQLPWIAAAPGKVEPKSGEILIGTSLPGRIAEVLVKVNDKVEVGELLLRLDDQEARARLAAAEAEAAVRKQERDSQPTPAGREDVRRAEDAVFSSERSLTGARFDLDRSLAGRRNGTVTEQMLTESRRRYADARDRLQRDRLAVATALARSNVPPPSRLESLLSAARAEVAVAEALLDKTRIRSPISGTVFQIHAKVGEIVVPAAEQPLIVMGDLSLIRVKAEVDELDASKIKLGQRVFVKSGSFPGKEFEGRVAALAPSL 300          
BLAST of mRNA_P-wetherbeei_contig12034.2.1 vs. uniprot
Match: V5SFU9_9HYPH (Secretion protein HlyD n=1 Tax=Hyphomicrobium nitrativorans NL23 TaxID=1029756 RepID=V5SFU9_9HYPH)

HSP 1 Score: 290 bits (741), Expect = 3.970e-94
Identity = 159/257 (61.87%), Postives = 202/257 (78.60%), Query Frame = 1
Query:   43 WIAAAPGRVEPRNGEIRIGTPILGRVIEVLAGVGASVEDGELLVRLDDDEARARMAAAESEAGARRQERDRLPMTAGREDVRRAEDAVYAAERGVTGARFELDFAQAARRKSTGTEQNVRAAKRRLDESYDRLQRERLSYAAAQAKPNVPPPSRAESAVSAGRADVAIAEAILDKTRIRAPAAGKVLQQQAKLGEIVGPSPEQPLVVIGDVGTMRVRAELDEADVAKVRIGQKAFVRSQSYPGREFEGTVVRIAPTL 813
            ++ AAPGRVEPR+GEIR+G   LGRV EV+  V   VE+GELL+RLDD EARA++A+AE+EA A R++R++    +GREDVR+AEDA+Y+AER VTGAR ELD+A +ARR  TG+E  V  A+RRL +++DRL+RER++Y  AQ+K N+P PSRAESAVSA RA+V +AEA+LDKTRIRAP AG +LQ  AK GEIV PSPE PLVV+GD+  +RV+AE+DE DV K+ + Q A+V S S PG  FEG V  IAPTL
Sbjct:   42 YVVAAPGRVEPRSGEIRLGASYLGRVEEVMVKVDDKVEEGELLLRLDDAEARAKLASAETEAEALREDREKA-FASGREDVRKAEDAIYSAERAVTGARIELDYAISARRVGTGSETAVSDARRRLKDAHDRLERERIAYVKAQSKANLPAPSRAESAVSAARAEVRMAEALLDKTRIRAPVAGTILQVNAKQGEIVAPSPEVPLVVLGDMSVLRVKAEVDEGDVGKISVNQTAYVTSISRPGERFEGRVTSIAPTL 297          
BLAST of mRNA_P-wetherbeei_contig12034.2.1 vs. uniprot
Match: UPI0009319A03 (efflux RND transporter periplasmic adaptor subunit n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI0009319A03)

HSP 1 Score: 288 bits (738), Expect = 1.090e-93
Identity = 155/257 (60.31%), Postives = 205/257 (79.77%), Query Frame = 1
Query:   43 WIAAAPGRVEPRNGEIRIGTPILGRVIEVLAGVGASVEDGELLVRLDDDEARARMAAAESEAGARRQERDRLPMTAGREDVRRAEDAVYAAERGVTGARFELDFAQAARRKSTGTEQNVRAAKRRLDESYDRLQRERLSYAAAQAKPNVPPPSRAESAVSAGRADVAIAEAILDKTRIRAPAAGKVLQQQAKLGEIVGPSPEQPLVVIGDVGTMRVRAELDEADVAKVRIGQKAFVRSQSYPGREFEGTVVRIAPTL 813
            ++ AAPGRVEP++GEIR+G   LGRV EVL  V   VE+GELL+RLDD EARA++A+AE+EA A R++R++    +GREDVR+AEDA+Y+AER VTGAR ELD+A +A+R  TG++  V  A+RRL ++ DRL+RER++Y  AQ+KPN+P PSRAESAVSA RA+V +AEA+LDKTRIRAP AG +L+  AK GE+V PSPE+PLVV+GD+  +RV+AE+DE DV K+++ Q A+V+S SY   +FEG V  IAPTL
Sbjct:   41 YVVAAPGRVEPKSGEIRVGATYLGRVEEVLVSVDDKVEEGELLLRLDDAEARAKLASAETEAEALREDREKA-FASGREDVRKAEDAIYSAERAVTGARIELDYAISAKRNGTGSDSAVTDARRRLKDANDRLERERIAYVKAQSKPNLPAPSRAESAVSAARAEVRMAEALLDKTRIRAPVAGTILELDAKAGEVVAPSPERPLVVMGDMSVVRVKAEVDEGDVNKIKLNQVAYVKSISYGDEKFEGKVTSIAPTL 296          
BLAST of mRNA_P-wetherbeei_contig12034.2.1 vs. uniprot
Match: A0A7Y5CYL9_HYPSQ (HlyD family efflux transporter periplasmic adaptor subunit n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A7Y5CYL9_HYPSQ)

HSP 1 Score: 286 bits (732), Expect = 2.140e-92
Identity = 149/257 (57.98%), Postives = 200/257 (77.82%), Query Frame = 1
Query:   43 WIAAAPGRVEPRNGEIRIGTPILGRVIEVLAGVGASVEDGELLVRLDDDEARARMAAAESEAGARRQERDRLPMTAGREDVRRAEDAVYAAERGVTGARFELDFAQAARRKSTGTEQNVRAAKRRLDESYDRLQRERLSYAAAQAKPNVPPPSRAESAVSAGRADVAIAEAILDKTRIRAPAAGKVLQQQAKLGEIVGPSPEQPLVVIGDVGTMRVRAELDEADVAKVRIGQKAFVRSQSYPGREFEGTVVRIAPTL 813
            W+AAAPGR+EPR G +R+G  +LGR+ +V   +  +VEDGELL+RLDDDEARAR+ AAE+EA +R++ERD   +   REDVR+AEDAV++AER +T ARFEL++   A+R+  G++  +  A+R L+ + D+LQ+ER SYA AQAK +VP PSR ESA+ A R+DVA+AEA+L+KTRIRAP AG +LQ  AK GE+V PSPEQ L VIGD+  +R++AE+DE DVAK+++G K  V+S +YPGREFEG V  +APTL
Sbjct:   71 WLAAAPGRIEPRTGLVRVGAQLLGRIADVTVKLNDTVEDGELLIRLDDDEARARLQAAETEAASRKRERDAQSLDKAREDVRKAEDAVFSAERTLTNARFELEYELQAKRQGKGSDSRIADARRSLNAAKDKLQKERASYATAQAKSDVPAPSRLESALQAARSDVAVAEALLEKTRIRAPVAGTILQLPAKTGEMVAPSPEQALAVIGDMSLVRLKAEVDEHDVAKIKVGGKVAVKSNAYPGREFEGHVAALAPTL 327          
BLAST of mRNA_P-wetherbeei_contig12034.2.1 vs. uniprot
Match: A0A6N6T445_9HYPH (HlyD family efflux transporter periplasmic adaptor subunit n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6T445_9HYPH)

HSP 1 Score: 285 bits (729), Expect = 2.680e-92
Identity = 151/261 (57.85%), Postives = 200/261 (76.63%), Query Frame = 1
Query:   31 PATAWIAAAPGRVEPRNGEIRIGTPILGRVIEVLAGVGASVEDGELLVRLDDDEARARMAAAESEAGARRQERDRLPMTAGREDVRRAEDAVYAAERGVTGARFELDFAQAARRKSTGTEQNVRAAKRRLDESYDRLQRERLSYAAAQAKPNVPPPSRAESAVSAGRADVAIAEAILDKTRIRAPAAGKVLQQQAKLGEIVGPSPEQPLVVIGDVGTMRVRAELDEADVAKVRIGQKAFVRSQSYPGREFEGTVVRIAPTL 813
            P   W+AAAPGRVEP++G+IRIGT I GRV+E+       V +GE+L+RL+D EARAR+ AAE+E  AR++ERD  P TAGR+D+R+AEDAV+AAER VT ARFELD   AA RKS G+ Q +  A++RL E+ D+L+RE +++AAA A+  VP P+R E+A+ A R +V +AE  LDKTRIRAP  G VLQ  AK GE+V PSP+ PL+ +GD+  +RVRAE+DE DVAK+++GQKAFVRS +YPG++FEG V  +AP+L
Sbjct:   41 PQVGWVAAAPGRVEPKSGQIRIGTGIAGRVMEIAVHTNDRVTEGEVLIRLEDKEARARLTAAEAEVAARKRERDAQPATAGRDDIRKAEDAVFAAERTVTNARFELDAVLAADRKSPGSPQALLQARKRLAEAKDKLRREHVAFAAAHARATVPAPNRLEAALIAARTEVTMAEEFLDKTRIRAPITGSVLQVNAKRGELVAPSPDVPLLTMGDMTVIRVRAEVDEQDVAKIKLGQKAFVRSSAYPGKDFEGKVTELAPSL 301          
BLAST of mRNA_P-wetherbeei_contig12034.2.1 vs. uniprot
Match: A0A6I3KSK8_9HYPH (HlyD family efflux transporter periplasmic adaptor subunit n=3 Tax=Hyphomicrobium TaxID=81 RepID=A0A6I3KSK8_9HYPH)

HSP 1 Score: 285 bits (729), Expect = 5.360e-92
Identity = 149/257 (57.98%), Postives = 201/257 (78.21%), Query Frame = 1
Query:   43 WIAAAPGRVEPRNGEIRIGTPILGRVIEVLAGVGASVEDGELLVRLDDDEARARMAAAESEAGARRQERDRLPMTAGREDVRRAEDAVYAAERGVTGARFELDFAQAARRKSTGTEQNVRAAKRRLDESYDRLQRERLSYAAAQAKPNVPPPSRAESAVSAGRADVAIAEAILDKTRIRAPAAGKVLQQQAKLGEIVGPSPEQPLVVIGDVGTMRVRAELDEADVAKVRIGQKAFVRSQSYPGREFEGTVVRIAPTL 813
            W+AAAPGRVEP +GE+ IG  ILG+V +V   +   VE+GELL+RLDD+EARAR+AAAE+EAG R+++RD  P T+GREDV + ED V+++ER V GARFELD A   +R+   TEQ +  A+RRL ++ +R++RERLSYA AQAK ++P P++ ESA++A RA+VA+A + LDKTRIR P  G VLQ   K GEIV PSPE PLVV+GD+  ++V+AE+D+ DVAK+++GQKAFVRS +YPG++FEG V  +APT+
Sbjct:   64 WVAAAPGRVEPGSGEVNIGVAILGQVADVTVKLNDDVEEGELLIRLDDEEARARLAAAEAEAGLRKRQRDAEPSTSGREDVTKGEDNVFSSEREVIGARFELDAALTGKRRGEATEQQLADARRRLGKAQERVERERLSYAQAQAKASLPSPNQFESALTAARANVALAASQLDKTRIRTPRKGSVLQLSVKQGEIVSPSPEHPLVVVGDMDVLKVKAEVDDGDVAKIKVGQKAFVRSINYPGKDFEGKVTALAPTM 320          
BLAST of mRNA_P-wetherbeei_contig12034.2.1 vs. uniprot
Match: UPI0003800B00 (efflux RND transporter periplasmic adaptor subunit n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI0003800B00)

HSP 1 Score: 281 bits (720), Expect = 5.970e-91
Identity = 152/254 (59.84%), Postives = 204/254 (80.31%), Query Frame = 1
Query:   52 AAPGRVEPRNGEIRIGTPILGRVIEVLAGVGASVEDGELLVRLDDDEARARMAAAESEAGARRQERDRLPMTAGREDVRRAEDAVYAAERGVTGARFELDFAQAARRKSTGTEQNVRAAKRRLDESYDRLQRERLSYAAAQAKPNVPPPSRAESAVSAGRADVAIAEAILDKTRIRAPAAGKVLQQQAKLGEIVGPSPEQPLVVIGDVGTMRVRAELDEADVAKVRIGQKAFVRSQSYPGREFEGTVVRIAPTL 813
            AAPGRVEP++G+IR+G   LGRV EVL  V   VE+GELL+RLDD EARA++A+AE+EA A R++R++    +GREDVR+AEDA+Y+AER VTGAR ELD+A +A+R  TG+E  V  A+RRL ++ +RL+RER++Y  AQ+KPN+P PSRAESAVSA RA+V +AEA+LDKTRIRAP+AG +LQ   K GE+V PSP+ PLVV+GD+  +RV+AE+DE DV K+++ Q A+V+S + P ++FEG V RIAP+L
Sbjct:   45 AAPGRVEPKSGDIRLGATYLGRVEEVLVKVDDKVEEGELLLRLDDAEARAKLASAETEAEALREDREKA-FASGREDVRKAEDAIYSAERAVTGARIELDYAISAKRSGTGSEAAVSDARRRLKDANERLERERIAYVKAQSKPNLPAPSRAESAVSAARAEVRMAEALLDKTRIRAPSAGTILQVNPKQGEVVAPSPDLPLVVMGDMSVVRVKAEVDEGDVGKIKLNQTAYVKSIAVPDQKFEGKVTRIAPSL 297          
BLAST of mRNA_P-wetherbeei_contig12034.2.1 vs. uniprot
Match: UPI0009304E14 (efflux RND transporter periplasmic adaptor subunit n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI0009304E14)

HSP 1 Score: 272 bits (696), Expect = 2.790e-87
Identity = 147/257 (57.20%), Postives = 195/257 (75.88%), Query Frame = 1
Query:   43 WIAAAPGRVEPRNGEIRIGTPILGRVIEVLAGVGASVEDGELLVRLDDDEARARMAAAESEAGARRQERDRLPMTAGREDVRRAEDAVYAAERGVTGARFELDFAQAARRKSTGTEQNVRAAKRRLDESYDRLQRERLSYAAAQAKPNVPPPSRAESAVSAGRADVAIAEAILDKTRIRAPAAGKVLQQQAKLGEIVGPSPEQPLVVIGDVGTMRVRAELDEADVAKVRIGQKAFVRSQSYPGREFEGTVVRIAPTL 813
            W+AAAPGRVEP +GE+ IG  ILG+V +V   +   VE+GELL+RLDD+EARAR+AAAE+EAG R+++RD  P T+GRE+V               GARFELD A   +R+   T+Q +  A+RRL ++ +R++RERL+YA AQAK N+P P++ ESA++A RA+VA+A + LDKTRIR+P AG VLQ  AK GEIV PSP+QPL V+GD+  + V+AE+D+ DVAK+RIGQKAFVRS +YPGR+FEGTVV +APT+
Sbjct:   44 WVAAAPGRVEPGSGEVHIGAAILGQVADVTVKINDKVEEGELLIRLDDEEARARLAAAEAEAGLRKRQRDAEPATSGRENVXXXXXXXXXXXXXXXGARFELDAALTGKRRGETTDQQLADARRRLAKAEERVERERLAYAQAQAKANLPSPNQFESALTAARANVALAASQLDKTRIRSPRAGTVLQLNAKKGEIVAPSPDQPLAVVGDMAVLHVKAEVDDGDVAKLRIGQKAFVRSINYPGRDFEGTVVDLAPTM 300          
BLAST of mRNA_P-wetherbeei_contig12034.2.1 vs. uniprot
Match: A0A120CWE1_HYPSL (HlyD family secretion protein n=2 Tax=Hyphomicrobium sulfonivorans TaxID=121290 RepID=A0A120CWE1_HYPSL)

HSP 1 Score: 272 bits (695), Expect = 4.480e-87
Identity = 150/263 (57.03%), Postives = 193/263 (73.38%), Query Frame = 1
Query:   25 PTPATAWIAAAPGRVEPRNGEIRIGTPILGRVIEVLAGVGASVEDGELLVRLDDDEARARMAAAESEAGARRQERDRLPMTAGREDVRRAEDAVYAAERGVTGARFELDFAQAARRKSTGTEQNVRAAKRRLDESYDRLQRERLSYAAAQAKPNVPPPSRAESAVSAGRADVAIAEAILDKTRIRAPAAGKVLQQQAKLGEIVGPSPEQPLVVIGDVGTMRVRAELDEADVAKVRIGQKAFVRSQSYPGREFEGTVVRIAPTL 813
            PTP   W+AAAPGRVEP +GE+RIG  ILG+V +V   V   VE+GELL+RLDDDEARAR+AA E++ G  R+ RD    T GREDV   ED +YAAER   GARF LD A A +R+       +  A+ RL+ +   ++R+R +YAAAQAK  +P P+ AESA++A RA+VA+A  +LDKTRIR P AG VLQ +AK+GEIV PSPEQPL V+GD+  +RV+AELD+ DVAKV++GQKAFVRS +YPG +F GTV  ++PT+
Sbjct:   39 PTPE--WVAAAPGRVEPGSGEVRIGAAILGQVYDVTVSVNDVVEEGELLIRLDDDEARARLAATEAQEGLSRRRRDAQTATPGREDVTSGEDEMYAAEREAIGARFALDEALAGKRRGEIGIDELAKARSRLNRALYHVERQRKAYAAAQAKDKLPAPNEAESALTAARAEVALAATLLDKTRIRTPRAGTVLQLRAKIGEIVAPSPEQPLAVVGDMSVVRVKAELDDGDVAKVKVGQKAFVRSINYPGHDFVGTVAELSPTM 299          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12034.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2S5MUP8_HYPSQ2.920e-9661.22Secretion protein HlyD n=2 Tax=unclassified Hyphom... [more]
A0A7C4TQN0_9HYPH1.300e-9560.54HlyD family efflux transporter periplasmic adaptor... [more]
V5SFU9_9HYPH3.970e-9461.87Secretion protein HlyD n=1 Tax=Hyphomicrobium nitr... [more]
UPI0009319A031.090e-9360.31efflux RND transporter periplasmic adaptor subunit... [more]
A0A7Y5CYL9_HYPSQ2.140e-9257.98HlyD family efflux transporter periplasmic adaptor... [more]
A0A6N6T445_9HYPH2.680e-9257.85HlyD family efflux transporter periplasmic adaptor... [more]
A0A6I3KSK8_9HYPH5.360e-9257.98HlyD family efflux transporter periplasmic adaptor... [more]
UPI0003800B005.970e-9159.84efflux RND transporter periplasmic adaptor subunit... [more]
UPI0009304E142.790e-8757.20efflux RND transporter periplasmic adaptor subunit... [more]
A0A120CWE1_HYPSL4.480e-8757.03HlyD family secretion protein n=2 Tax=Hyphomicrobi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12034contigP-wetherbeei_contig12034:1241..2053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1267005.KB911256_gene2069
PFAMsBiotin_lipoyl_2,HlyD_D23
Model size813
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02005
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.79e-92
EggNOG OGsCOG1566@1|root,COG1566@2|Bacteria,1R7IY@1224|Proteobacteria,2U4ET@28211|Alphaproteobacteria
DescriptionBarrel-sandwich domain of CusB or HlyD membrane-fusion
Cds size813
COG categoryV
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185935.7793896-CDS-P-wetherbeei_contig12034:1240..20531683185935.7793896-CDS-P-wetherbeei_contig12034:1240..2053Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12034 1241..2053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12034.2.1prot_P-wetherbeei_contig12034.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12034 1241..2053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12034.2.1

>prot_P-wetherbeei_contig12034.2.1 ID=prot_P-wetherbeei_contig12034.2.1|Name=mRNA_P-wetherbeei_contig12034.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=271bp
SPARAAGQPTPATAWIAAAPGRVEPRNGEIRIGTPILGRVIEVLAGVGAS
VEDGELLVRLDDDEARARMAAAESEAGARRQERDRLPMTAGREDVRRAED
AVYAAERGVTGARFELDFAQAARRKSTGTEQNVRAAKRRLDESYDRLQRE
RLSYAAAQAKPNVPPPSRAESAVSAGRADVAIAEAILDKTRIRAPAAGKV
LQQQAKLGEIVGPSPEQPLVVIGDVGTMRVRAELDEADVAKVRIGQKAFV
RSQSYPGREFEGTVVRIAPTL
back to top

mRNA from alignment at P-wetherbeei_contig12034:1241..2053+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12034.2.1 ID=mRNA_P-wetherbeei_contig12034.2.1|Name=mRNA_P-wetherbeei_contig12034.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=813bp|location=Sequence derived from alignment at P-wetherbeei_contig12034:1241..2053+ (Phaeothamnion wetherbeei SAG_119_79)
TCTCCGGCCAGGGCCGCAGGTCAGCCGACGCCGGCGACGGCCTGGATCGC GGCAGCTCCCGGCCGCGTCGAGCCGCGCAATGGCGAGATCAGGATCGGCA CGCCGATTCTGGGCCGCGTGATCGAGGTTCTTGCCGGCGTAGGTGCCAGC GTCGAGGACGGCGAATTGCTCGTCCGCCTCGACGACGACGAGGCGCGCGC GCGCATGGCCGCCGCCGAATCCGAAGCCGGCGCTCGCCGCCAGGAGCGCG ACCGGCTTCCCATGACGGCCGGCCGCGAGGACGTCCGGCGCGCCGAGGAC GCGGTATATGCCGCCGAGCGCGGCGTGACGGGAGCCCGTTTCGAGCTCGA CTTCGCCCAGGCCGCGCGCCGCAAGAGCACGGGAACCGAGCAGAACGTGA GGGCCGCAAAGCGCCGCCTCGATGAATCCTACGATCGCCTGCAGCGCGAG CGCCTGTCCTACGCCGCGGCCCAGGCGAAGCCCAACGTTCCCCCGCCGAG CCGCGCCGAATCGGCTGTCAGCGCCGGCCGCGCCGATGTTGCGATTGCCG AAGCGATCCTCGACAAGACGCGTATCCGGGCCCCTGCTGCCGGCAAGGTT CTGCAGCAGCAAGCCAAGCTCGGCGAGATCGTCGGCCCGTCGCCCGAGCA GCCGCTGGTGGTGATCGGCGATGTCGGCACGATGCGCGTGCGCGCCGAGT TGGATGAAGCTGACGTCGCCAAGGTCCGCATCGGCCAGAAGGCGTTCGTT CGTTCGCAGAGCTATCCCGGCCGCGAGTTCGAAGGCACCGTCGTCCGCAT TGCTCCCACGCTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12034:1241..2053+

>mRNA_P-wetherbeei_contig12034.2.1 ID=mRNA_P-wetherbeei_contig12034.2.1|Name=mRNA_P-wetherbeei_contig12034.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=813bp|location=Sequence derived from alignment at P-wetherbeei_contig12034:1241..2053+ (Phaeothamnion wetherbeei SAG_119_79)
TCTCCGGCCAGGGCCGCAGGTCAGCCGACGCCGGCGACGGCCTGGATCGC
GGCAGCTCCCGGCCGCGTCGAGCCGCGCAATGGCGAGATCAGGATCGGCA
CGCCGATTCTGGGCCGCGTGATCGAGGTTCTTGCCGGCGTAGGTGCCAGC
GTCGAGGACGGCGAATTGCTCGTCCGCCTCGACGACGACGAGGCGCGCGC
GCGCATGGCCGCCGCCGAATCCGAAGCCGGCGCTCGCCGCCAGGAGCGCG
ACCGGCTTCCCATGACGGCCGGCCGCGAGGACGTCCGGCGCGCCGAGGAC
GCGGTATATGCCGCCGAGCGCGGCGTGACGGGAGCCCGTTTCGAGCTCGA
CTTCGCCCAGGCCGCGCGCCGCAAGAGCACGGGAACCGAGCAGAACGTGA
GGGCCGCAAAGCGCCGCCTCGATGAATCCTACGATCGCCTGCAGCGCGAG
CGCCTGTCCTACGCCGCGGCCCAGGCGAAGCCCAACGTTCCCCCGCCGAG
CCGCGCCGAATCGGCTGTCAGCGCCGGCCGCGCCGATGTTGCGATTGCCG
AAGCGATCCTCGACAAGACGCGTATCCGGGCCCCTGCTGCCGGCAAGGTT
CTGCAGCAGCAAGCCAAGCTCGGCGAGATCGTCGGCCCGTCGCCCGAGCA
GCCGCTGGTGGTGATCGGCGATGTCGGCACGATGCGCGTGCGCGCCGAGT
TGGATGAAGCTGACGTCGCCAAGGTCCGCATCGGCCAGAAGGCGTTCGTT
CGTTCGCAGAGCTATCCCGGCCGCGAGTTCGAAGGCACCGTCGTCCGCAT
TGCTCCCACGCTC
back to top