mRNA_P-wetherbeei_contig1203.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1203.2.2
Unique NamemRNA_P-wetherbeei_contig1203.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1203.2.2 vs. uniprot
Match: A0A4Y7QG43_9AGAM (Ankyrin n=1 Tax=Rickenella mellea TaxID=50990 RepID=A0A4Y7QG43_9AGAM)

HSP 1 Score: 52.4 bits (124), Expect = 6.810e-5
Identity = 27/77 (35.06%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:  847 SLHFAVRRGNAAAIAHLFNVEKSRPYEAHVDSDGCSPLHWAAALWQVDCLAELLKHKSKWSDRRDREGLLPLHVACR 1077
            S+H A      + +  L  VE++      +DSDG +PLHWAA+    D +  L+ HK++  D++D  G  PLH++C+
Sbjct:    7 SIHNAAMNNQLSLLRAL--VEENPDLVNALDSDGRTPLHWAASSGSKDIVIYLIDHKAE-IDKQDSSGWTPLHISCK 80
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1203.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4Y7QG43_9AGAM6.810e-535.06Ankyrin n=1 Tax=Rickenella mellea TaxID=50990 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1203contigP-wetherbeei_contig1203:2187..6519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog526224.Bmur_0474
PFAMsAnk,Ank_2,Ank_4
Model size2210
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons8
Evalue7.9e-06
EggNOG OGsCOG0666@1|root,COG0666@2|Bacteria
Descriptionresponse to abiotic stimulus
Cds size1929
COG categoryG
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1203.2.2prot_P-wetherbeei_contig1203.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1203 2187..6240 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185935.5362144-CDS-P-wetherbeei_contig1203:2186..23361683185935.5362144-CDS-P-wetherbeei_contig1203:2186..2336Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1203 2187..2336 -
1683185935.5463157-CDS-P-wetherbeei_contig1203:2455..25961683185935.5463157-CDS-P-wetherbeei_contig1203:2455..2596Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1203 2456..2596 -
1683185935.555385-CDS-P-wetherbeei_contig1203:2879..29901683185935.555385-CDS-P-wetherbeei_contig1203:2879..2990Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1203 2880..2990 -
1683185935.5648038-CDS-P-wetherbeei_contig1203:3324..35111683185935.5648038-CDS-P-wetherbeei_contig1203:3324..3511Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1203 3325..3511 -
1683185935.574236-CDS-P-wetherbeei_contig1203:3871..39961683185935.574236-CDS-P-wetherbeei_contig1203:3871..3996Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1203 3872..3996 -
1683185935.583675-CDS-P-wetherbeei_contig1203:4374..47461683185935.583675-CDS-P-wetherbeei_contig1203:4374..4746Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1203 4375..4746 -
1683185935.5926063-CDS-P-wetherbeei_contig1203:5003..51971683185935.5926063-CDS-P-wetherbeei_contig1203:5003..5197Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1203 5004..5197 -
1683185935.6028836-CDS-P-wetherbeei_contig1203:5591..62401683185935.6028836-CDS-P-wetherbeei_contig1203:5591..6240Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1203 5592..6240 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185935.6100912-UTR-P-wetherbeei_contig1203:6240..65191683185935.6100912-UTR-P-wetherbeei_contig1203:6240..6519Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1203 6241..6519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1203.2.2

>prot_P-wetherbeei_contig1203.2.2 ID=prot_P-wetherbeei_contig1203.2.2|Name=mRNA_P-wetherbeei_contig1203.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=643bp
MDLPGAREFPEAAPGGPNVSAVAPASGAGYDAGGVPAAAPMMLGGSAAGQ
LPPLLPQSATSAMLQLGSLPLLPPPANFANANAAAPAPLTPTPATAQHEA
YPMTVASFATTALLPPPLSYASAAYSGGASPVSGSGTTTAGLSMTSFGGG
TTGRRSGASGSTSPVDSGIVRNAKRNNNNVDSEFLLPLSSLHFAVRRGNA
AAIAHLFNVEKSRPYEAHVDSDGCSPLHWAAALWQVDCLAELLKHKSKWS
DRRDREGLLPLHVACRFADEVFFDGDGVEEKAGNVSDGCKEKDALLPQNG
SLPKEEVNGGTTSDEEAWDDGGDSGGGCGGSGGCGGGNRTGGAMRAGPPH
DMLRCLEMLLQREKGGGLDGEDSSLTLDGQSVLHVSAAAGNEPAIQYLLQ
KIHRKARLINAQDGRGQTPLYCACKQGRTGVVQMLLDKRANISLKASNGL
SPLQVAAYRGHTNCVRLLLRASCVPGSLEDRGGRSAVHFAAAGGHTETLQ
LLLNEPNMKVDAVGERNWTALHHAARRGRTEVVALLLSQGASPSTHDVHL
RTPLHWACSASHGKGCVAALVAAGAPMLGLDVNSHSCLVIAAEAGNVGCV
EELWRASPADFATLLATADREGVGPLATALRGGHEACALRLLE
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mRNA from alignment at P-wetherbeei_contig1203:2187..6519-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1203.2.2 ID=mRNA_P-wetherbeei_contig1203.2.2|Name=mRNA_P-wetherbeei_contig1203.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4333bp|location=Sequence derived from alignment at P-wetherbeei_contig1203:2187..6519- (Phaeothamnion wetherbeei SAG_119_79)
TCTGTACTGTAAAACAGAATGAATAGTTTCCCACACTCTTTCACTCTACC
TTCTTGACCACCATTCCACCTCCCAAAAAGCTGGGATCCTGCCATTCTTG
CTTTCGAGACTGTTTTGATGCTCTCTTTCGATTGAAAGACAAGGCTGGGA
CAAACTTGATCCGAAGAGCTAAAGAGGCGTTGTCCATTTTATTCCTCCTG
TTTTGTGCTTATCTCGACGCATACTGACCCACGGCTGTCGAAACCTCCCA
ATTTGTCGAAGTCTTTGACGATCGTCGCAATGGACTTGCCAGGCGCCCGC
GAATTCCCCGAGGCGGCGCCGGGTGGCCCAAATGTGAGCGCGGTTGCTCC
GGCAAGCGGAGCTGGGTATGATGCTGGCGGGGTGCCAGCGGCTGCTCCGA
TGATGCTCGGAGGAAGCGCGGCTGGACAGCTTCCACCTTTGCTGCCCCAG
AGCGCTACCAGTGCGATGCTGCAGCTGGGATCTCTACCGCTCCTGCCTCC
GCCGGCGAATTTTGCGAACGCAAATGCGGCGGCGCCGGCGCCCCTGACCC
CGACGCCGGCAACGGCCCAGCATGAGGCCTACCCCATGACCGTCGCTTCG
TTTGCCACCACAGCACTCCTGCCACCGCCGCTTAGCTACGCCTCCGCCGC
TTACAGCGGGGGCGCCTCCCCGGTCTCTGGTTCGGGTACAACTACTGCGG
GGCTGTCCATGACGTCGTTCGGCGGTGGCACCACCGGCAGACGCAGCGGC
GCCTCGGGCAGCACGAGCCCTGTGGACTCAGGTATTGTTCGCAACGCAAA
ACGGAACAATAATAATGTCGACTCGGAGTTCCTCCTGCCCCTGAGCTCGC
TGCACTTCGCCGTGCGGCGTGGCAATGCCGCCGCCATTGCCCACCTGTTC
AATGTGGAGAAGAGTCGGCCCTACGAAGGCGAGCTAAACGGGCGATATGC
GCGGCTGAAATGCCATCAGTAACGTTCTGTCGTTGTAATGATTGAGAATT
CTTGGGCTTCCCGAAGGCGGCCAAGTTAAGGCAAGTTAGTTTGCAGTTGT
TCTCCATGCTGGGTGGGGCGTGACGGGTTTAACCATGTGTACGGCGGTTC
CGCTTAGAGTAGTTCATGCCGTCACCGCCGCAACCAGTCGTTCGCGTCTG
CCTTCCACTGCTGCTGCCGCCGTCCACCGCCGCCGCCGGACTGCTGACCG
CATTCTACTGCTGTTCCCGTCCGCCGCTGCCGCCGCCGCCGCCACCGCCG
CCGCCGCCGCCTGCCGCCACCGGACCCGACACTGACACCGACCACCGACA
CTGACACCGACACCAACTGCAGCGCACGTGGACTCGGACGGGTGTTCGCC
GCTGCACTGGGCGGCCGCGCTGTGGCAGGTAGACTGCCTCGCCGAGCTTC
TGAAGCACAAGTCCAAGTGGAGCGACCGGCGGGACCGCGAAGGCCTGCTG
CCGTTGCACGTTGCTTGCCGCTTCGCCGACGAGGTCTTCTTCGACGGGGA
CGGTGTTGAGGAGAAGGTGCGTTTGGGGGAAAAAGAAGGAACAACGATTC
AGAAATCGTATCTTTAAGCAAACTGGCCGGGCACCGGTTACTGTCTTTGC
AACCACCAGCAGCTTGTGAAAGCCGCAAGCGCTGTAATATGGGAAGAGAC
GCGGGAACAGAATCGGCCCAGCCAGGCCGACTTGCAGGCGACCGGACGCG
CTCCTGTTTCGTCCATGCGACAGTGCGACAGTTCCCTGGATCTCTCGCCC
ATGGACTGTCGCTCCTTTTGCAGGCTGGCAATGTTAGTGACGGCTGCAAG
GAGAAGGACGCCCTTCTCCCGCAGAACGGCAGCCTCCCGAAGGAGGAAGT
CAACGGCGGCACCACCAGCGACGAGGAGGCCTGGGACGACGGAGGCGACA
GCGGCGGCGGCTGCGGGGGCAGCGGTGGCTGCGGCGGGGGGAATCGGACG
GGTGGCGCGATGCGGGCCGGGCCGCCGCACGACATGCTGCGCTGCCTGGA
GATGCTGCTGCAGCGGGAGAAGGGCGGTGGACTGGACGGAGAGGACTCGA
GCTTGACGCTGGACGGGCAGTCGGTGCTGCACGTGTCGGCGGCGGCGGGC
AATGAGCCCGCCATCCAGTACTTGCTGCAGAAAATTCACAGGAAGGTGAG
AAGAGGAATGGGGCTTGGAGGGATTTGTGATGCTCTTCTTGTAGTTTTTG
GCGTGTTTGAATGCTACTACAGCTATGCCGTCTCTCCAATAGGGTCAGGT
CTCGGATGCATGCCTCGGGTGCTCAAGATGCTGGTTTCTTTCGGGGAAGG
GTCAGTTTAGAATGCATGCAACGGCTTCGATCTTAGAGAACGCCATTTCC
TCTCCGCTCATAGTCTGCTTTTCCACCTCTCTGCTTTCCAAGACATTACC
GCCTCAACCCCTCCGAAGTACTGTTTGATCGTCGCTGCCGCTTTCTCGTG
TGGCCGGGCTGGCGCTTTTTTGTGTGGTCGGGTGGCGAATTCGGCGCCTT
GCGCTGGACGTTGGATGCCGCAGGCCCGGCTGATCAATGCGCAGGACGGC
AGGGGACAGACCCCGCTCTACTGCGCCTGCAAACAGGGCCGCACCGGTGT
CGTCCAGATGCTGCTTGACAAGCGGGCAAATATATCGCTAAAGGCTAGGT
GAGTTCTAGCCCGTCGTTCGCAGCGCCGCTGCGTTCGTATTTGCTTTCGC
CGCGCTCGATTCGCTGCGCCGCTTCTCTTTGTTCTGCACGAGTTTGTTCA
ATCGTTCCTGCGCTCCTTTCTTCTTGCACCCCCGTCTGGCAAGTTATCGG
GAGGATTTCGTTGTGAGGGTCAGATTTCGTTCTCCTCCGGCTCCACGACC
TATTTCTTCTTTGTCCGTTCGCTCCTGCCGCACACGGACCACCGCTGCCC
CTGTCCGTCGCCAATGCCACTGCTCGATGCCGCCGCCACTGCCGGCCGTC
GCTGCCGCTGCCGCCCATTGCCGTCGTCGCCGCCGCTCCTTGCCGCCGAT
GCCAACAGCAACGGTCTCTCCCCGCTGCAGGTGGCAGCCTACCGCGGCCA
CACGAATTGCGTCCGGCTGCTGCTACGGGCGAGCTGCGTGCCCGGCAGCC
TCGAAGACAGGGGTGGCCGCTCGGCGGTGCACTTCGCAGCCGCCGGTGGC
CACACCGAGACGCTCCAGTTGCTCCTGAACGAGCCTAACATGAAGGCGAG
TCTGCTGTAGACTTTTCGATTCTGAATGTCTTGAAATTAATCGTTTTGAC
TAGGAGGAAGAGTTCCTACTTGTTTGCGGTTGGTCGGCGGCCGGCATTTC
ACAAGAATGAAGTGGTTTTGCGATCGACTCGTCGCGCTCTGTCCGTTGTT
TTTAAATTAGTTTTCTGCCGTTCTTTCTGTCAGCGGCATTGGCTCTGCAG
AACGATTAGCTTGATCAGCCGCCATGATTCCGCTCTTCTGGTCTTTTCAT
TTGCTTGATGCCGAAACGCTATGACATGCCCCTCCTCAGTCGCTCTTCTA
CGGATGCTGTCCGTTCTCGCCGCGCTCAGGTGGACGCGGTGGGCGAGCGC
AACTGGACCGCCCTCCACCACGCAGCGCGCCGAGGCCGGACGGAGGTGGT
GGCCCTCCTCCTCTCCCAAGGAGCCTCGCCGTCCACCCACGTCAGTCGGT
TGTTTCAGGCTTTCCTTTCCGAAGCATGCCTTTTCTGTTTCTTTTTCGTT
TTTCTTTTTTGGCACCTTTTGCACCTTTTGCGTGCTTTTGTGCCCGTTTT
CTTTTACGTTGATCCTTTTTGTCATTTACCACCGTCCTTTTTTGGAAAGT
GTTATCGTTGGCAGGAGTCAAGTAGCTTTGAAACTAATTGGGAACGGCCG
GCGTCTGGTTTCTTCCCGTTCCTCCGTTGTTCCGTACGCGCGAAAACCCC
CAATGGCGATCGCGGCGGCACAGGACGTCCACTTGCGGACGCCGCTGCAC
TGGGCGTGCAGCGCCAGCCATGGCAAGGGCTGCGTTGCGGCGCTGGTGGC
GGCCGGCGCCCCGATGCTGGGGCTGGACGTCAACAGCCACTCCTGTCTGG
TCATCGCCGCAGAGGTAACCACCCCAACATGTACGAAATCGCCGCCAAAA
CGCCGCCGAAGCCTCAACCTGAAAACAAGAATCGAAATCCTTCCACTTTT
CTGCCTCTTTTCACGGCGGTGGGTGCACTGCAGGCGGGAAATGTGGGGTG
CGTGGAGGAGCTGTGGCGAGCGTCGCCTGCGGACTTTGCGACGCTGCTCG
CCACGGCGGACCGCGAGGGGGTCGGCCCACTGGCAACGGCGCTGCGCGGC
GGCCACGAGGCCTGCGCCCTCAGGCTGCTGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1203:2187..6519-

>mRNA_P-wetherbeei_contig1203.2.2 ID=mRNA_P-wetherbeei_contig1203.2.2|Name=mRNA_P-wetherbeei_contig1203.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1929bp|location=Sequence derived from alignment at P-wetherbeei_contig1203:2187..6519- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACTTGCCAGGCGCCCGCGAATTCCCCGAGGCGGCGCCGGGTGGCCC
AAATGTGAGCGCGGTTGCTCCGGCAAGCGGAGCTGGGTATGATGCTGGCG
GGGTGCCAGCGGCTGCTCCGATGATGCTCGGAGGAAGCGCGGCTGGACAG
CTTCCACCTTTGCTGCCCCAGAGCGCTACCAGTGCGATGCTGCAGCTGGG
ATCTCTACCGCTCCTGCCTCCGCCGGCGAATTTTGCGAACGCAAATGCGG
CGGCGCCGGCGCCCCTGACCCCGACGCCGGCAACGGCCCAGCATGAGGCC
TACCCCATGACCGTCGCTTCGTTTGCCACCACAGCACTCCTGCCACCGCC
GCTTAGCTACGCCTCCGCCGCTTACAGCGGGGGCGCCTCCCCGGTCTCTG
GTTCGGGTACAACTACTGCGGGGCTGTCCATGACGTCGTTCGGCGGTGGC
ACCACCGGCAGACGCAGCGGCGCCTCGGGCAGCACGAGCCCTGTGGACTC
AGGTATTGTTCGCAACGCAAAACGGAACAATAATAATGTCGACTCGGAGT
TCCTCCTGCCCCTGAGCTCGCTGCACTTCGCCGTGCGGCGTGGCAATGCC
GCCGCCATTGCCCACCTGTTCAATGTGGAGAAGAGTCGGCCCTACGAAGC
GCACGTGGACTCGGACGGGTGTTCGCCGCTGCACTGGGCGGCCGCGCTGT
GGCAGGTAGACTGCCTCGCCGAGCTTCTGAAGCACAAGTCCAAGTGGAGC
GACCGGCGGGACCGCGAAGGCCTGCTGCCGTTGCACGTTGCTTGCCGCTT
CGCCGACGAGGTCTTCTTCGACGGGGACGGTGTTGAGGAGAAGGCTGGCA
ATGTTAGTGACGGCTGCAAGGAGAAGGACGCCCTTCTCCCGCAGAACGGC
AGCCTCCCGAAGGAGGAAGTCAACGGCGGCACCACCAGCGACGAGGAGGC
CTGGGACGACGGAGGCGACAGCGGCGGCGGCTGCGGGGGCAGCGGTGGCT
GCGGCGGGGGGAATCGGACGGGTGGCGCGATGCGGGCCGGGCCGCCGCAC
GACATGCTGCGCTGCCTGGAGATGCTGCTGCAGCGGGAGAAGGGCGGTGG
ACTGGACGGAGAGGACTCGAGCTTGACGCTGGACGGGCAGTCGGTGCTGC
ACGTGTCGGCGGCGGCGGGCAATGAGCCCGCCATCCAGTACTTGCTGCAG
AAAATTCACAGGAAGGCCCGGCTGATCAATGCGCAGGACGGCAGGGGACA
GACCCCGCTCTACTGCGCCTGCAAACAGGGCCGCACCGGTGTCGTCCAGA
TGCTGCTTGACAAGCGGGCAAATATATCGCTAAAGGCTAGCAACGGTCTC
TCCCCGCTGCAGGTGGCAGCCTACCGCGGCCACACGAATTGCGTCCGGCT
GCTGCTACGGGCGAGCTGCGTGCCCGGCAGCCTCGAAGACAGGGGTGGCC
GCTCGGCGGTGCACTTCGCAGCCGCCGGTGGCCACACCGAGACGCTCCAG
TTGCTCCTGAACGAGCCTAACATGAAGGTGGACGCGGTGGGCGAGCGCAA
CTGGACCGCCCTCCACCACGCAGCGCGCCGAGGCCGGACGGAGGTGGTGG
CCCTCCTCCTCTCCCAAGGAGCCTCGCCGTCCACCCACGACGTCCACTTG
CGGACGCCGCTGCACTGGGCGTGCAGCGCCAGCCATGGCAAGGGCTGCGT
TGCGGCGCTGGTGGCGGCCGGCGCCCCGATGCTGGGGCTGGACGTCAACA
GCCACTCCTGTCTGGTCATCGCCGCAGAGGCGGGAAATGTGGGGTGCGTG
GAGGAGCTGTGGCGAGCGTCGCCTGCGGACTTTGCGACGCTGCTCGCCAC
GGCGGACCGCGAGGGGGTCGGCCCACTGGCAACGGCGCTGCGCGGCGGCC
ACGAGGCCTGCGCCCTCAGGCTGCTGGAG
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