mRNA_P-wetherbeei_contig1203.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1203.1.1
Unique NamemRNA_P-wetherbeei_contig1203.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1203.1.1 vs. uniprot
Match: A0A3N5FZ13_9BACT (Ankyrin repeat domain-containing protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3N5FZ13_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 2.240e-5
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:  730 ITLLLGAGADHSGADVHGQTPLHHAAATGNREVWTRLVAAGARIDVTDDGGATPVDRAISCGHNGMRTNYQG 945
            I L L AGAD +G ++ G T +H+AA TG   +   L  +GA++D+ +  G TP+D A++ G  GM  N  G
Sbjct:   18 IKLFLQAGADINGVNMVGNTAMHYAAQTGANRIVEFLATSGAKLDIKNKDGKTPLDLALAPGPRGMYDNASG 89
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1203.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3N5FZ13_9BACT2.240e-540.28Ankyrin repeat domain-containing protein (Fragment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1203contigP-wetherbeei_contig1203:862..2096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog29730.Gorai.013G028700.1
PFAMsAnk,Ank_2,Ank_3,Ank_5,ArfGap,BAR_3,PH
Model size1237
Max annot lvl35493|Streptophyta
KEGG koko:K12489
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.24e-05
EggNOG OGsCOG5347@1|root,KOG0521@2759|Eukaryota,37MIK@33090|Viridiplantae,3GCAB@35493|Streptophyta
DescriptionADP-ribosylation factor GTPase-activating protein
Cds size1233
COG categoryT
BRITEko00000,ko00001,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185935.6323755-CDS-P-wetherbeei_contig1203:863..20961683185935.6323755-CDS-P-wetherbeei_contig1203:863..2096Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1203 864..2096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1203.1.1prot_P-wetherbeei_contig1203.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1203 864..2096 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1203.1.1

>prot_P-wetherbeei_contig1203.1.1 ID=prot_P-wetherbeei_contig1203.1.1|Name=mRNA_P-wetherbeei_contig1203.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=411bp
GSGGGGGGGSSCVPGVFGSLVEPQKRGILHMAAEAGAGAVILGIAKAASR
MAAAAVADNGDEVAASGGEAAAAGAATGAAAEAAAGAEIASVLPPAIDPF
AQDAEGMTPLALAVRSGNHVCAAHLLRQFPRSGGGGGGGRGGRDDGSKAL
AIPDKLGRLPLHWAALAGDLEMAALLLSQPNLPLLQTAALKAALAAESAA
KGGGGAPKPPYILTAGLLESRDKDGWTAMALAAASRTTSAIGCITLLLGA
GADHSGADVHGQTPLHHAAATGNREVWTRLVAAGARIDVTDDGGATPVDR
AISCGHNGMRTNYQGGINKGFGSSTGSPPVTQGCAAGKRIGGGNGLSGFV
RAANALKLKTCYGGSSGGNGRDGSNDGGGGRGISSTVGSGHSGVSAGGRG
SRGSAAAAVPY
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mRNA from alignment at P-wetherbeei_contig1203:862..2096-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1203.1.1 ID=mRNA_P-wetherbeei_contig1203.1.1|Name=mRNA_P-wetherbeei_contig1203.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1235bp|location=Sequence derived from alignment at P-wetherbeei_contig1203:862..2096- (Phaeothamnion wetherbeei SAG_119_79)
GGAAGCGGCGGCGGCGGCGGCGGCGGCAGCAGCTGCGTGCCGGGCGTCTT
TGGCAGCCTGGTGGAGCCGCAGAAGAGGGGTATCCTACACATGGCGGCGG
AGGCGGGTGCAGGCGCTGTGATCTTGGGGATTGCAAAGGCTGCCAGCCGC
ATGGCCGCGGCGGCGGTTGCGGACAATGGTGACGAGGTGGCAGCCAGCGG
CGGCGAGGCGGCTGCGGCTGGAGCGGCGACTGGAGCAGCGGCAGAGGCAG
CAGCAGGCGCAGAAATTGCCTCTGTGCTGCCACCTGCCATAGATCCGTTT
GCGCAGGACGCGGAAGGGATGACGCCGTTGGCGCTCGCCGTTCGGAGCGG
CAACCACGTCTGCGCGGCACACCTGCTGAGACAGTTTCCGAGAAGCGGTG
GCGGCGGCGGCGGCGGAAGAGGCGGCAGAGACGACGGGTCGAAAGCGCTG
GCGATTCCTGATAAGCTCGGCCGGCTCCCGCTCCATTGGGCCGCGCTCGC
GGGCGATTTGGAGATGGCCGCGCTTCTGCTGTCCCAACCGAACCTCCCGC
TGCTGCAGACGGCCGCACTCAAGGCAGCGCTGGCCGCGGAGAGCGCCGCG
AAGGGCGGCGGCGGCGCGCCAAAGCCACCGTACATCCTGACGGCGGGGCT
GCTGGAGTCACGGGACAAGGACGGCTGGACGGCGATGGCGTTGGCGGCGG
CTTCGCGCACGACAAGCGCCATCGGCTGCATCACGCTTCTGCTGGGCGCC
GGCGCCGACCACAGCGGTGCAGACGTGCATGGCCAGACGCCGCTGCATCA
CGCGGCGGCAACGGGAAACAGGGAGGTCTGGACGCGGCTGGTCGCGGCCG
GCGCGCGGATTGACGTGACTGATGACGGCGGGGCGACGCCAGTTGATCGC
GCCATATCGTGCGGCCACAACGGCATGCGGACTAACTATCAGGGGGGCAT
CAACAAGGGGTTCGGCAGCAGCACCGGAAGCCCACCAGTCACGCAGGGCT
GCGCGGCCGGCAAGAGGATTGGCGGCGGCAACGGCCTGAGCGGGTTTGTG
AGGGCCGCCAACGCCTTGAAGTTGAAGACCTGTTACGGAGGTAGCAGCGG
CGGAAACGGCCGTGACGGTAGCAACGACGGCGGCGGCGGTCGCGGCATTA
GCAGCACTGTTGGCAGCGGCCACAGCGGTGTTAGCGCCGGCGGCCGCGGC
AGCCGCGGCAGCGCTGCCGCCGCTGTCCCTTATGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1203:862..2096-

>mRNA_P-wetherbeei_contig1203.1.1 ID=mRNA_P-wetherbeei_contig1203.1.1|Name=mRNA_P-wetherbeei_contig1203.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1233bp|location=Sequence derived from alignment at P-wetherbeei_contig1203:862..2096- (Phaeothamnion wetherbeei SAG_119_79)
GGAAGCGGCGGCGGCGGCGGCGGCGGCAGCAGCTGCGTGCCGGGCGTCTT
TGGCAGCCTGGTGGAGCCGCAGAAGAGGGGTATCCTACACATGGCGGCGG
AGGCGGGTGCAGGCGCTGTGATCTTGGGGATTGCAAAGGCTGCCAGCCGC
ATGGCCGCGGCGGCGGTTGCGGACAATGGTGACGAGGTGGCAGCCAGCGG
CGGCGAGGCGGCTGCGGCTGGAGCGGCGACTGGAGCAGCGGCAGAGGCAG
CAGCAGGCGCAGAAATTGCCTCTGTGCTGCCACCTGCCATAGATCCGTTT
GCGCAGGACGCGGAAGGGATGACGCCGTTGGCGCTCGCCGTTCGGAGCGG
CAACCACGTCTGCGCGGCACACCTGCTGAGACAGTTTCCGAGAAGCGGTG
GCGGCGGCGGCGGCGGAAGAGGCGGCAGAGACGACGGGTCGAAAGCGCTG
GCGATTCCTGATAAGCTCGGCCGGCTCCCGCTCCATTGGGCCGCGCTCGC
GGGCGATTTGGAGATGGCCGCGCTTCTGCTGTCCCAACCGAACCTCCCGC
TGCTGCAGACGGCCGCACTCAAGGCAGCGCTGGCCGCGGAGAGCGCCGCG
AAGGGCGGCGGCGGCGCGCCAAAGCCACCGTACATCCTGACGGCGGGGCT
GCTGGAGTCACGGGACAAGGACGGCTGGACGGCGATGGCGTTGGCGGCGG
CTTCGCGCACGACAAGCGCCATCGGCTGCATCACGCTTCTGCTGGGCGCC
GGCGCCGACCACAGCGGTGCAGACGTGCATGGCCAGACGCCGCTGCATCA
CGCGGCGGCAACGGGAAACAGGGAGGTCTGGACGCGGCTGGTCGCGGCCG
GCGCGCGGATTGACGTGACTGATGACGGCGGGGCGACGCCAGTTGATCGC
GCCATATCGTGCGGCCACAACGGCATGCGGACTAACTATCAGGGGGGCAT
CAACAAGGGGTTCGGCAGCAGCACCGGAAGCCCACCAGTCACGCAGGGCT
GCGCGGCCGGCAAGAGGATTGGCGGCGGCAACGGCCTGAGCGGGTTTGTG
AGGGCCGCCAACGCCTTGAAGTTGAAGACCTGTTACGGAGGTAGCAGCGG
CGGAAACGGCCGTGACGGTAGCAACGACGGCGGCGGCGGTCGCGGCATTA
GCAGCACTGTTGGCAGCGGCCACAGCGGTGTTAGCGCCGGCGGCCGCGGC
AGCCGCGGCAGCGCTGCCGCCGCTGTCCCTTAT
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