mRNA_P-wetherbeei_contig12022.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12022.1.1
Unique NamemRNA_P-wetherbeei_contig12022.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12022.1.1 vs. uniprot
Match: A0A7S2C5P0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C5P0_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.720e-34
Identity = 65/135 (48.15%), Postives = 77/135 (57.04%), Query Frame = 1
Query:    7 DSASCGVEDSSTPCCTECYG--LQYC-SALTGFEVEDKYMPSVASSQGSCWDFDERAQRLEVFGPERTFRDTDTCRALVYEYSCLWWGSDNDAFINRCTNS-PPVPPCRSFCVELAETCANNVEQYKTLCEDIDC 399
            D   CG  D   PCC  C    + YC  AL G  +ED+Y P+     GSC + DER   L+VFG  +TFRD D CR LV EY CLWWGS+N  + NRC N      PCR FCV++   CANN E +  LC DI C
Sbjct:  118 DDEDCGTSDEECPCCIRCLNEEMSYCHDALGGKLLEDQYYPTEKGISGSCDNLDERVGALDVFGKGKTFRDNDECRDLVREYVCLWWGSENAHYENRCNNGGQAAKPCRGFCVQVGLVCANN-EDWMNLCYDIPC 251          
BLAST of mRNA_P-wetherbeei_contig12022.1.1 vs. uniprot
Match: A0A835Z6T3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6T3_9STRA)

HSP 1 Score: 127 bits (319), Expect = 3.420e-33
Identity = 64/161 (39.75%), Postives = 78/161 (48.45%), Query Frame = 1
Query:   19 CGVEDSSTPCCTECYGLQYCSALTGFEVEDKYMPSVASSQGSCWDFDERAQRLEVFGPERT-----------------------------------------------FRDTDTCRALVYEYSCLWWGSDNDAFINRCTNSPPVPPCRSFCVELAETCANN 360
            CGV  +  PCC  C GL  CS L  + VE+KY P  + + GSC +FD+R  RL VFGPE+T                                               FRDT  CR  VY Y+CLWWG+DN  F NRC +    PPCRSFCV++AE CAN+
Sbjct:   52 CGVAPNPVPCCVLCLGLNQCSVLNSYAVEEKYYPGSSGTVGSCTNFDDRVSRLAVFGPEKTVWXXXXXXXXXXXXXXXSCDAAQVXXXXXXXXEKTVSXXXXXXXXXXFRDTPDCRKWVYAYTCLWWGTDNAHFDNRCGSFANRPPCRSFCVQVAEVCAND 212          
BLAST of mRNA_P-wetherbeei_contig12022.1.1 vs. uniprot
Match: A0A7S2RFQ7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFQ7_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.000e-26
Identity = 57/137 (41.61%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    7 DSASCGVEDSSTPCCTECYGLQYCSALTGFEVEDKYMPSVASSQGSCWDFDERAQRLEVFGPERT---FRDTDTCRALVYEYSCLWWGSDNDAFINRCTN-SPPVP--PCRSFCVELAETCANNVEQYKTLCEDIDC 399
            DS SCG    +  C   C  L++C+ L    +ED Y P++ ++ GSC + +ERA RL+++G  RT   F+DT  CR+LV  Y+CL W +    F +RC++ S  VP  PCRSFC E+A TCAN+++ +  +C +I C
Sbjct:  140 DSQSCGPPPLTACCNASCSSLEHCAVLNDMVIEDTYFPTLPATHGSCLELEERASRLDLWGDYRTNKPFKDTPQCRSLVLNYTCLTWAT---MFPSRCSDLSEQVPRAPCRSFCTEVATTCANDLD-WINICHNIVC 272          
BLAST of mRNA_P-wetherbeei_contig12022.1.1 vs. uniprot
Match: A0A1W0A1Z6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1Z6_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.410e-24
Identity = 49/107 (45.79%), Postives = 65/107 (60.75%), Query Frame = 1
Query:   49 CTECYGLQYCSALTGFEVED------KYMPSVASSQGSCWDFDERAQRLEVFGPERTFRDTDTCRALVYEYSCLWWGSDNDAFINRCTNSPPVPPCRSFCVELAETC 351
            CT C+GLQYCS+L G  + D      +   +    QG C D D+    L VFG    F+DTD+CRALVY+++CL W ++     N C N+P  PPCRS CVE+A+TC
Sbjct:   28 CTTCWGLQYCSSLNGLALPDPVSGYTRNATTQLQKQGVCEDIDKAVTLLTVFGSAYQFKDTDSCRALVYKFNCLSWAANG----NTCANAPS-PPCRSMCVEIADTC 129          
BLAST of mRNA_P-wetherbeei_contig12022.1.1 vs. uniprot
Match: A0A7S2FUR6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FUR6_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.010e-21
Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  175 LEVFGPERTFRDTDTCRALVYEYSCLWWGSDNDAFINRCTNS-PPVPPCRSFCVELAETCANNVEQYKTLCEDIDC 399
            L+VFG  +TFRD D CR LV EY CLWWGS+N  + NRC N      PCR FCV++   CANN E +  LC DI C
Sbjct:    8 LDVFGKGKTFRDNDECRDLVREYVCLWWGSENAHYENRCNNGGQAAKPCRGFCVQVGLVCANN-EDWMNLCYDIPC 82          
BLAST of mRNA_P-wetherbeei_contig12022.1.1 vs. uniprot
Match: A0A0A7CNY8_9STRA (Secreted protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A0A7CNY8_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.940e-20
Identity = 48/121 (39.67%), Postives = 60/121 (49.59%), Query Frame = 1
Query:   49 CTECYGLQYCSALTGFEVEDKYM--------------------PSVASSQGSCWDFDERAQRLEVFGPERTFRDTDTCRALVYEYSCLWWGSDNDAFINRCTNSPPVPPCRSFCVELAETC 351
            CT C+ LQ C  L G  + D  +                     S  S QG C D D     LEVFG    ++DT TCRAL+Y ++CL W S      N C N+P +PPCRS CVE+A+TC
Sbjct:   30 CTTCWQLQNCEVLNGHALPDTVLGYTRSSALCVQEFLNFRRNATSQLSKQGVCEDIDRAVTLLEVFGSAYQYKDTPTCRALIYRFNCLSWASKG----NTCPNAP-LPPCRSMCVEIADTC 145          
BLAST of mRNA_P-wetherbeei_contig12022.1.1 vs. uniprot
Match: A0A6G0WZ04_9STRA (FZ domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZ04_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.070e-18
Identity = 42/107 (39.25%), Postives = 59/107 (55.14%), Query Frame = 1
Query:   49 CTECYGLQYCSALTGFEVEDKYM------PSVASSQGSCWDFDERAQRLEVFGPERTFRDTDTCRALVYEYSCLWWGSDNDAFINRCTNSPPVPPCRSFCVELAETC 351
            CT C+ L  C AL G  + D  +       +  + QG C D D     L +FG +  ++DT  CRALVY+ +CL W S      N C N+P +PPCRS CV++A++C
Sbjct:   32 CTSCWQLSNCKALNGLSLPDPIVGYTRNATTQLAKQGVCEDIDRAVTLLTIFGGQYQYKDTPACRALVYKLNCLTWASTK----NSCPNAP-LPPCRSMCVQVADSC 133          
BLAST of mRNA_P-wetherbeei_contig12022.1.1 vs. uniprot
Match: A0A067CP93_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CP93_SAPPC)

HSP 1 Score: 84.0 bits (206), Expect = 2.200e-17
Identity = 43/101 (42.57%), Postives = 56/101 (55.45%), Query Frame = 1
Query:   67 LQYCSALTGFEVEDKYM------PSVASSQGSCWDFDERAQRLEVFGPERTFRDTDTCRALVYEYSCLWWGSDNDAFINRCTNSPPVPPCRSFCVELAETC 351
            LQ+C+ L G  + D  +       S    QG C D D    RL VFG    F+DT  CR LV +++CL W + N    N C N+P +PPCRS CVE+A+TC
Sbjct:   36 LQHCATLNGLALPDPIVGYTRNATSQLEKQGVCEDLDASVARLGVFGSAYQFKDTPGCRGLVNKFNCLSWAAAN----NACPNAP-LPPCRSMCVEIADTC 131          
BLAST of mRNA_P-wetherbeei_contig12022.1.1 vs. uniprot
Match: T0QGT9_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QGT9_SAPDV)

HSP 1 Score: 75.5 bits (184), Expect = 1.280e-14
Identity = 36/77 (46.75%), Postives = 46/77 (59.74%), Query Frame = 1
Query:  121 SVASSQGSCWDFDERAQRLEVFGPERTFRDTDTCRALVYEYSCLWWGSDNDAFINRCTNSPPVPPCRSFCVELAETC 351
            S    QG C D D    RL VFG    F+DT  CRA V +++CL W + N    N C N+P +PPCRS CV++A+TC
Sbjct:    7 SQLEKQGVCEDLDASVARLGVFGAAYQFKDTPACRASVNKFNCLSWAAAN----NACPNAP-LPPCRSMCVDIADTC 78          
BLAST of mRNA_P-wetherbeei_contig12022.1.1 vs. uniprot
Match: H3GX36_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GX36_PHYRM)

HSP 1 Score: 74.7 bits (182), Expect = 1.830e-13
Identity = 42/120 (35.00%), Postives = 57/120 (47.50%), Query Frame = 1
Query:   49 CTECYGLQYCSALTGFEVEDKYMPSVASS---------QGSCWDFDERAQRLEVFGPERTFRDTDTCRALVYEYSCLWW----------GSDNDAFINRCTNSPPVPPCRSFCVELAETC 351
            C +C GLQYC+ + G  + D   P V  S         QG C D D +   L  FG +  F+DT  C  LV+ + CL W          G+         + +PP+PPCRS CVE+A+ C
Sbjct:   62 CVKCDGLQYCTIMNGQYLFD---PIVGYSREATPQLEKQGVCEDMDAKTLALSPFGNQVQFKDTAACHKLVWNFHCLSWVATTFQREVNGTQVSCASTGGSATPPLPPCRSLCVEVADKC 178          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12022.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A7S2C5P0_9STRA1.720e-3448.15Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835Z6T3_9STRA3.420e-3339.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RFQ7_9STRA2.000e-2641.61Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1W0A1Z6_9STRA1.410e-2445.79Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S2FUR6_9STRA2.010e-2155.26Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A0A7CNY8_9STRA2.940e-2039.67Secreted protein n=1 Tax=Achlya hypogyna TaxID=120... [more]
A0A6G0WZ04_9STRA1.070e-1839.25FZ domain-containing protein n=1 Tax=Aphanomyces e... [more]
A0A067CP93_SAPPC2.200e-1742.57Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0QGT9_SAPDV1.280e-1446.75Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
H3GX36_PHYRM1.830e-1335.00Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12022contigP-wetherbeei_contig12022:54..1333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008868171.1
Model size405
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue6.15e-20
EggNOG OGs2CHWE@1|root,2S3Q4@2759|Eukaryota
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-08_002790.1
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185935.3499467-CDS-P-wetherbeei_contig12022:53..1711683185935.3499467-CDS-P-wetherbeei_contig12022:53..171Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12022 54..171 -
1683185935.3722057-CDS-P-wetherbeei_contig12022:517..6401683185935.3722057-CDS-P-wetherbeei_contig12022:517..640Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12022 518..640 -
1683185935.383375-CDS-P-wetherbeei_contig12022:934..9991683185935.383375-CDS-P-wetherbeei_contig12022:934..999Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12022 935..999 -
1683185935.3915935-CDS-P-wetherbeei_contig12022:1234..13331683185935.3915935-CDS-P-wetherbeei_contig12022:1234..1333Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12022 1235..1333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12022.1.1prot_P-wetherbeei_contig12022.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12022 54..1333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12022.1.1

>prot_P-wetherbeei_contig12022.1.1 ID=prot_P-wetherbeei_contig12022.1.1|Name=mRNA_P-wetherbeei_contig12022.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
ATDSASCGVEDSSTPCCTECYGLQYCSALTGFEVEDKYMPSVASSQGSCW
DFDERAQRLEVFGPERTFRDTDTCRALVYEYSCLWWGSDNDAFINRCTNS
PPVPPCRSFCVELAETCANNVEQYKTLCEDIDCPP
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mRNA from alignment at P-wetherbeei_contig12022:54..1333-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12022.1.1 ID=mRNA_P-wetherbeei_contig12022.1.1|Name=mRNA_P-wetherbeei_contig12022.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1280bp|location=Sequence derived from alignment at P-wetherbeei_contig12022:54..1333- (Phaeothamnion wetherbeei SAG_119_79)
GCCACCGACAGCGCGAGCTGCGGCGTGGAGGACAGCTCGACCCCGTGCTG CACCGAGTGCTATGGCCTGCAGTACTGCTCCGCCCTTACTGGTTTTGAGG TGCGCTTTTGAACACCGTTTCTTGTAGGCGTTCTCCCCGTACTTCTTTCT GTTTCTGTGTGCTTCTCTGGTGCGGCATGTCTCCTCCGTTAGCTTTTCAA CGACGTACTACATTAGCCCTTCGCAATGAAAGGAGGGTAAGCAGATGGAG CAGGCGCCTCTCTGCTTCCGTTCCTCTCGAGGCGTATCGTTATACTTCGA AATCCCTGTTTCGGCGAAATACGTGGCGTGGCAGGTGGAGGACAAATACA TGCCGAGCGTGGCAAGCTCACAAGGCTCCTGTTGGGACTTTGACGAAAGG TGAGGATCTCGGCGCCGGCAGCCTCTTTCTTCCATTATCATATTCTCGGC GCTTGACACTCCGGTTCTCTCACTGAGGATAATACGCTAAGGGTAAGCGC CGCTCTTCTTAGCGTTTCCTAGCAGTCTTTGTCCATTCCCTGCTGTGTCG AGTTTTTTGCGCCGAGTGAAGCGAAAGATTGGCCTCTTCTCTTTCCCTGA TTCTTTCTCGCTGCACACTGACAACTGAACCGGTCTGCCCCACTCGCACG TCACTGGCTGCGATTGCGCTGCGCCGTGACGCGCCGTCGGCAGGGCGCAG CGTCTGGAGGTGTTCGGACCGGAACGGACCTTCCGGGACACGGACACGTG CCGGGCGCTCGTCTATGAGTACTCGTGCCTCTGGTGGGGCAGCGACAACG ACGCCTTTATCAACAGGTGAAAATTTGAATTGAAAAGAAGAAGATGAAAG GGTGGAAGGTTGATAAGCTATGAATGGGTTTATCATTCAGATTTGGCCGA TGCTGAGATACTTCCGTCTGTTTTGGCGTCGCCCACGTTCTTGCTGTACC AGGATTGTTGTTGGAAATTTTATTTTCAATGCTCAACGTAGGTCGAACTG CCTCACCAAATGACTGCTTCTCTCCTTTTCCGATTGCTGACCGCCGGCTC CGGCTGCTGCGGCGGGCGGCGGCAACTGCAACCGAATCACCTGTGGGACT GCGGGACTGCGGGATGTGGGACTGCTGTGGAAACTTGATCTGCTGTGGAC GGTGGCGGGCAGGTGCACCAACTCGCCGCCGGTGCCGCCGTGCCGCAGCT TTTGCGTGGAGCTCGCCGAGACGTGTGCCAACAACGTCGAGCAGTACAAG ACGTTATGCGAGGACATTGACTGCCCGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12022:54..1333-

>mRNA_P-wetherbeei_contig12022.1.1 ID=mRNA_P-wetherbeei_contig12022.1.1|Name=mRNA_P-wetherbeei_contig12022.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig12022:54..1333- (Phaeothamnion wetherbeei SAG_119_79)
GCCACCGACAGCGCGAGCTGCGGCGTGGAGGACAGCTCGACCCCGTGCTG
CACCGAGTGCTATGGCCTGCAGTACTGCTCCGCCCTTACTGGTTTTGAGG
TGGAGGACAAATACATGCCGAGCGTGGCAAGCTCACAAGGCTCCTGTTGG
GACTTTGACGAAAGGGCGCAGCGTCTGGAGGTGTTCGGACCGGAACGGAC
CTTCCGGGACACGGACACGTGCCGGGCGCTCGTCTATGAGTACTCGTGCC
TCTGGTGGGGCAGCGACAACGACGCCTTTATCAACAGGTGCACCAACTCG
CCGCCGGTGCCGCCGTGCCGCAGCTTTTGCGTGGAGCTCGCCGAGACGTG
TGCCAACAACGTCGAGCAGTACAAGACGTTATGCGAGGACATTGACTGCC
CGCCC
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