mRNA_P-wetherbeei_contig11972.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11972.1.1
Unique NamemRNA_P-wetherbeei_contig11972.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11972.1.1 vs. uniprot
Match: A0A836C3N3_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C3N3_9CHLO)

HSP 1 Score: 96.7 bits (239), Expect = 3.720e-21
Identity = 56/110 (50.91%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    1 IKDLAKDL-GAGAGGKVVIDAMNPLTAGQDKLQVRWELGTSAAEVLQAALPPEARVFKAFNSTGVEHMSHPDGLLISGDRLTMLFAGDAKEKEGDAAVEIARRIVADAGF 327
            IK +A  L G  A GKV+ID  NPL +    L+VRW  GTSA EVL AALP    V+KAFN+ GVEHMSHPDG LI+G +L+MLF G      G   +E    +++  GF
Sbjct:   26 IKTVADSLLGPNAAGKVIIDTTNPLNS-YPNLEVRWREGTSAGEVLAAALPNSV-VYKAFNTVGVEHMSHPDGSLITGQQLSMLFCG------GPERLEEVEEVISAVGF 127          
BLAST of mRNA_P-wetherbeei_contig11972.1.1 vs. uniprot
Match: A0A150FY09_GONPE (F420_oxidored domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150FY09_GONPE)

HSP 1 Score: 96.3 bits (238), Expect = 1.430e-20
Identity = 59/109 (54.13%), Postives = 70/109 (64.22%), Query Frame = 1
Query:    1 IKDLAKDLGAGAGGKVVIDAMNPLTAGQDKLQVRWELGTSAAEVLQAALPPEARVFKAFNSTGVEHMSHPDGLLISGDRLTMLFAGDAKEKEGDAAVEIARRIVADAGF 327
            IK +A  LG    GKVVIDA NP++     L+VRW  G S  EVL  ALP ++ VFKAFN+ GVEHM+ PDG  ISG++LTMLFAG      G A  E A  +VA AGF
Sbjct:   74 IKAIAAGLGTEIRGKVVIDATNPVSP-YPALEVRWT-GKSGGEVLAEALP-DSHVFKAFNTVGVEHMAQPDGSAISGEQLTMLFAG------GPAGREAAEEVVAAAGF 173          
BLAST of mRNA_P-wetherbeei_contig11972.1.1 vs. uniprot
Match: A0A2J7ZZV8_9CHLO (Metalloreductase STEAP3 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZZV8_9CHLO)

HSP 1 Score: 95.9 bits (237), Expect = 2.040e-20
Identity = 56/109 (51.38%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    1 IKDLAKDLGAGAGGKVVIDAMNPLTAGQDKLQVRWELGTSAAEVLQAALPPEARVFKAFNSTGVEHMSHPDGLLISGDRLTMLFAGDAKEKEGDAAVEIARRIVADAGF 327
            IK  A  LG G  GKV+IDA NPLT+    L+VRW  GTS  EVL A LP +  V+KAFN+ GV  MSH DG  I+G +LTMLFAG      G A  E A  +++  GF
Sbjct:   74 IKSTAASLGPGIAGKVLIDATNPLTSWPG-LEVRWTAGTSGGEVLAAVLP-DTIVYKAFNTIGVNQMSHADGSAITGQQLTMLFAG------GPAQREAAEEVISAVGF 174          
BLAST of mRNA_P-wetherbeei_contig11972.1.1 vs. uniprot
Match: E1Z7K4_CHLVA (Expressed protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z7K4_CHLVA)

HSP 1 Score: 90.1 bits (222), Expect = 1.040e-18
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 1
Query:    1 IKDLAKDLGAGAGGKVVIDAMNPLTAGQDKLQVRWELGTSAAEVLQAALPPEARVFKAFNSTGVEHMSHPDGLLISGDRLTMLFAGDAKEKEGDAAVEIARRIVADAGF 327
            IK +A  LG GA GK++ID +N L A    L + W  G S++E++Q  LP E  V+KAF++ GVE M+ PDG LI+G +LTMLFAG A++K+  AAV      VA AGF
Sbjct:   24 IKAMAASLGPGAKGKLLIDVINGLNA-WPSLALDWAGGPSSSEIVQEELP-ETAVYKAFSTVGVEQMTAPDGSLINGQQLTMLFAGPAEKKDAVAAV------VAGAGF 124          
BLAST of mRNA_P-wetherbeei_contig11972.1.1 vs. uniprot
Match: A0A2P6TWF3_CHLSO (NADP oxidoreductase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TWF3_CHLSO)

HSP 1 Score: 85.5 bits (210), Expect = 2.330e-16
Identity = 49/95 (51.58%), Postives = 65/95 (68.42%), Query Frame = 1
Query:   13 AKDLGAGAGGKVVIDAMNPLTAGQDKLQVRWELGTSAAEVLQAALPPEARVFKAFNSTGVEHMSHPDGLLISGDRLTMLFAGDAKEKEGDAAVEI 297
            A+ LG  A GK+VIDA NPL +  ++L   W  G S+AEVL   LP E+ V KAFN+ GVEHM+ PDG L++G RLT++FAG A E + + A+ I
Sbjct:   94 ARSLGPSAAGKLVIDATNPLDSEGNELC--WSRGRSSAEVLAQCLP-ESFVCKAFNTVGVEHMARPDGALVTGQRLTLMFAGTA-EHQAEVALLI 184          
BLAST of mRNA_P-wetherbeei_contig11972.1.1 vs. uniprot
Match: A0A7S1V4Z3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V4Z3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.940e-15
Identity = 47/109 (43.12%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    1 IKDLAKDLGAGAGGKVVIDAMNPLTAGQDKLQVRWELGTSAAEVLQAALPPEARVFKAFNSTGVEHMSHPDGLLISGDRLTMLFAGDAKEKEGDAAVEIARRIVADAGF 327
            I+++ K LG    GK++IDA NPLT  QD LQ+RW  GTS  EVLQ  LP   +V+KAFN+ GVE M+   G         M F G + + + +A   +A  +VA  GF
Sbjct:   95 IQEVGKSLGD-VSGKIIIDATNPLTEFQDGLQIRWPQGTSGGEVLQNCLPDTTKVYKAFNTCGVEQMASASGK-------DMFFCGPSGDDDDEA---LAAEVVAAVGF 192          
BLAST of mRNA_P-wetherbeei_contig11972.1.1 vs. uniprot
Match: A0A8J4FFJ3_9CHLO (F420_oxidored domain-containing protein n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4FFJ3_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 2.790e-15
Identity = 48/109 (44.04%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    1 IKDLAKDLGAGAGGKVVIDAMNPLTAGQDKLQVRWELGTSAAEVLQAALPPEARVFKAFNSTGVEHMSHPDGLLISGDRLTMLFAGDAKEKEGDAAVEIARRIVADAGF 327
            I+++A +LG    GKV++DA NP+T     L+VRW  G SA EVL   LP  A V+KAFN+ G   M H DG  I+G++LTM+FAG    K       +   ++AD GF
Sbjct:  126 IREIASNLGPDIKGKVLVDATNPVTP-YPSLEVRWT-GKSAGEVLSEVLPDTA-VYKAFNTIGANQMEHADGSGITGEQLTMMFAGGPDHKG------LVEEVIADTGF 225          
BLAST of mRNA_P-wetherbeei_contig11972.1.1 vs. uniprot
Match: A0A835YWW1_9STRA (F420_oxidored domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWW1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.020e-13
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:    1 IKDLAKDLGAGAGGKVVIDAMNPLTAGQDKLQVRWELGTSAAEVLQAALPPEARVFKAFNSTGVEHMSHPDGLLISG---DRLTMLFAGDAKEKEGDAAV 291
            I  LA+ LG    GKV+ID  NPL+A    L+VRW+ GTS AEVLQAALP  A ++KAFN+ GVE+MSH DG   +G    +L+M++AG  ++ +  A +
Sbjct:   78 ITKLAESLGD-VTGKVIIDVTNPLSAFPG-LEVRWKQGTSGAEVLQAALP-NAIIYKAFNTLGVENMSHGDGSGFAGWTGGQLSMMYAGGPEKNDQVATL 174          
BLAST of mRNA_P-wetherbeei_contig11972.1.1 vs. uniprot
Match: A0A835YVX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVX5_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.220e-13
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:    1 IKDLAKDLGAGAGGKVVIDAMNPLTAGQDKLQVRWELGTSAAEVLQAALPPEARVFKAFNSTGVEHMSHPDGLLISG---DRLTMLFAGDAKEKEGDAAV 291
            I  LA+ LG    GK +ID  NPL+    +++VRW+ GTSAAEVLQ+ALP  A V+KAFN+ GVE+MSH DG   +G    +L+M++AG  ++ +  A +
Sbjct:    3 IVKLAESLGD-VTGKPIIDVTNPLSD-YPQMEVRWKQGTSAAEVLQSALP-NAIVYKAFNTLGVENMSHGDGSGFAGWTGGQLSMMYAGGPEKNDRVATL 99          
BLAST of mRNA_P-wetherbeei_contig11972.1.1 vs. uniprot
Match: A0A7R9VKS1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VKS1_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.190e-11
Identity = 49/109 (44.95%), Postives = 61/109 (55.96%), Query Frame = 1
Query:    1 IKDLAKDLGAGAGGKVVIDAMNPLTAGQDKLQVRWELGTSAAEVLQAALPPEARVFKAFNSTGVEHMSHPDGLLISGDRLTMLFAGDAKEKEGDAAVEIARRIVADAGF 327
            I+ LAK LG    GK +IDA NPL+   D L++RW+ GTS  E+LQ  LP EA+V+KAFN+ GVE M  P    +  D   MLF G     EG         +VA  GF
Sbjct:   87 IEKLAKSLGD-VSGKSIIDATNPLSEFGDGLEIRWKQGTSGGEILQKYLP-EAKVYKAFNTVGVELMDRPRS--VGTD---MLFCGPDDGIEG---------VVAAVGF 179          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11972.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A836C3N3_9CHLO3.720e-2150.91Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A150FY09_GONPE1.430e-2054.13F420_oxidored domain-containing protein n=1 Tax=Go... [more]
A0A2J7ZZV8_9CHLO2.040e-2051.38Metalloreductase STEAP3 n=1 Tax=Tetrabaena sociali... [more]
E1Z7K4_CHLVA1.040e-1849.54Expressed protein n=1 Tax=Chlorella variabilis Tax... [more]
A0A2P6TWF3_CHLSO2.330e-1651.58NADP oxidoreductase n=1 Tax=Chlorella sorokiniana ... [more]
A0A7S1V4Z3_9STRA1.940e-1543.12Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A8J4FFJ3_9CHLO2.790e-1544.04F420_oxidored domain-containing protein n=3 Tax=Vo... [more]
A0A835YWW1_9STRA1.020e-1349.00F420_oxidored domain-containing protein n=1 Tax=Tr... [more]
A0A835YVX5_9STRA3.220e-1347.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9VKS1_9STRA3.190e-1144.95Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11972contigP-wetherbeei_contig11972:217..1334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog554065.XP_005850037.1
Model size754
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.1e-14
EggNOG OGsCOG2085@1|root,2S5US@2759|Eukaryota,380T3@33090|Viridiplantae,34M6C@3041|Chlorophyta
Descriptioncupric reductase activity
Cds size276
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185933.3473575-UTR-P-wetherbeei_contig11972:216..6341683185933.3473575-UTR-P-wetherbeei_contig11972:216..634Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11972 217..634 -
1683185933.3761585-UTR-P-wetherbeei_contig11972:1274..13341683185933.3761585-UTR-P-wetherbeei_contig11972:1274..1334Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11972 1275..1334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185933.3580568-CDS-P-wetherbeei_contig11972:634..8861683185933.3580568-CDS-P-wetherbeei_contig11972:634..886Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11972 635..886 -
1683185933.3671658-CDS-P-wetherbeei_contig11972:1250..12741683185933.3671658-CDS-P-wetherbeei_contig11972:1250..1274Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11972 1251..1274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11972.1.1prot_P-wetherbeei_contig11972.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11972 635..1274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11972.1.1

>prot_P-wetherbeei_contig11972.1.1 ID=prot_P-wetherbeei_contig11972.1.1|Name=mRNA_P-wetherbeei_contig11972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
MNPLTAGQDKLQVRWELGTSAAEVLQAALPPEARVFKAFNSTGVEHMSHP
DGLLISGDRLTMLFAGDAKEKEGDAAVEIARRIVADAGFGE*
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mRNA from alignment at P-wetherbeei_contig11972:217..1334-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11972.1.1 ID=mRNA_P-wetherbeei_contig11972.1.1|Name=mRNA_P-wetherbeei_contig11972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1118bp|location=Sequence derived from alignment at P-wetherbeei_contig11972:217..1334- (Phaeothamnion wetherbeei SAG_119_79)
ATCAAGGACCTGGCGAAGGACCTCGGGGCCGGCGCCGGCGGCAAGGTGGT CATCGACGCCATGAACCCTCTCACGGCTGGGCAGGTGAGGCGTGCCGGAA GGGTGCGGGGACGGCGACGGGCGCCGGCAACGGCGGCGGCGGTGGCTGTG GCCTTTCACGACGGCTGGGGCGCCTCTTTCTGGATCGACCAGGAGCTGAG GACAATCAAGTTAACCTCCGATAAGCCATCCGGATATGTGAGGTCTTTGA CGCAGGCCCGTTCGCCTTCCAAATCGCCGTTTCTGGCCACCTTACTAATA CGTTAAGCCCTTCTGCAGACGCATGTTTCTTAAGTTCTTTCGCGTACCTC CCGAACTGGCGGAAACATATGCTGAAATCTTTTTTTTTAAACCGGAATCC CCATCTTTCCCTCTCCTCCTCCTCCTCCTTTCGTTCCAAAAGGGGGAGGA CAAGCTGCAGGTGCGGTGGGAGCTGGGCACCTCCGCCGCTGAGGTGCTCC AGGCGGCACTGCCCCCCGAGGCACGCGTCTTCAAGGCCTTTAACTCGACA GGCGTCGAGCACATGAGCCACCCCGACGGGCTTTTGATCTCCGGAGACCG CCTCACAATGCTATTCGCCGGGGACGCCAAGGAGAAGGAGGGAGATGCGG CCGTGGAGATTGCCCGCCGCATCGTCGCCGACGCTGGCTTCGGTGAGTGA AGACAGAGGGAGGAAGAGCTCTTTTTGGGGGTTGTTGTTTGCGCGTGGAT GCGTGGAGGGAGATTCTGTTTGGGTCTTTTGCTGGTTGACGTAGCATGGC GCCGTACTTTCTCCGGTTGCAGATACTGTGTGCAAATGCCTTCACGCCAC AGCGGAACTTCTTCTGAATTTCTCAGTCGTTGATCATGACTATTGCTGCG GCTGGCGCTGACATGGAGGGGAGGCTTTCTGCGCAGAACAAGAGCACGGG TGTGATCTTAGCTGTCCCGGTATCGCTTCGGGCGGGCGCTTCGTAGTGGT TGCCGCCGCTGCCGCCGCCGCCCCCGCTGCTGCCCCGAGCTCGGCATCGC TTTTGTAGGAGGTCGAGTCAGTCGCCGCCTCCTTCTTAAGCGCGTAGGCC GGCTGCGAGTGTTGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11972:217..1334-

>mRNA_P-wetherbeei_contig11972.1.1 ID=mRNA_P-wetherbeei_contig11972.1.1|Name=mRNA_P-wetherbeei_contig11972.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig11972:217..1334- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCCTCTCACGGCTGGGCAGGACAAGCTGCAGGTGCGGTGGGAGCT
GGGCACCTCCGCCGCTGAGGTGCTCCAGGCGGCACTGCCCCCCGAGGCAC
GCGTCTTCAAGGCCTTTAACTCGACAGGCGTCGAGCACATGAGCCACCCC
GACGGGCTTTTGATCTCCGGAGACCGCCTCACAATGCTATTCGCCGGGGA
CGCCAAGGAGAAGGAGGGAGATGCGGCCGTGGAGATTGCCCGCCGCATCG
TCGCCGACGCTGGCTTCGGTGAGTGA
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