mRNA_P-wetherbeei_contig11925.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11925.1.1
Unique NamemRNA_P-wetherbeei_contig11925.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11925.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11925contigP-wetherbeei_contig11925:146..1266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size501
Hectar predicted targeting categoryother localisation
Exons3
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185931.7444122-CDS-P-wetherbeei_contig11925:145..3461683185931.7444122-CDS-P-wetherbeei_contig11925:145..346Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11925 146..346 +
1683185931.7531404-CDS-P-wetherbeei_contig11925:643..7801683185931.7531404-CDS-P-wetherbeei_contig11925:643..780Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11925 644..780 +
1683185931.7609549-CDS-P-wetherbeei_contig11925:1103..12661683185931.7609549-CDS-P-wetherbeei_contig11925:1103..1266Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11925 1104..1266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11925.1.1prot_P-wetherbeei_contig11925.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11925 146..1266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11925.1.1

>prot_P-wetherbeei_contig11925.1.1 ID=prot_P-wetherbeei_contig11925.1.1|Name=mRNA_P-wetherbeei_contig11925.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
LPRKVGAPLDANATHMAALREGTAAAGGEMVLFASHARLMKNLASAAVGL
PCVGGAQELAAVAVDSQRVNHGLPRCLQLMREGMPGLQVVVLLGSRWVHL
LGTSALDGCHVLSMPITPANVAGALRHVFAAPKAARPDSAATALAAESPE
DGIACIEHLSIDRHRSV
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mRNA from alignment at P-wetherbeei_contig11925:146..1266+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11925.1.1 ID=mRNA_P-wetherbeei_contig11925.1.1|Name=mRNA_P-wetherbeei_contig11925.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1121bp|location=Sequence derived from alignment at P-wetherbeei_contig11925:146..1266+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCCGCGCAAGGTCGGTGCGCCACTCGATGCCAACGCGACGCACATGGC
GGCGCTGCGCGAGGGGACGGCGGCTGCAGGCGGGGAGATGGTCCTGTTTG
CGTCCCATGCGAGGCTGATGAAGAACCTGGCGAGCGCCGCCGTGGGCCTG
CCGTGCGTCGGTGGCGCGCAGGAGCTCGCGGCGGTGGCGGTCGACTCGCA
GGTGAGAGAAGAGACCGGCAAGCAAACGCAGAGGCTTTCAATTTTGCAAG
CGACGCTGATGGACTATGCTGATGGACGACGCTGATGGACGACGCTGATT
CTGAGTGGCGGTTAGCTGCCACAAGAGCACTGACTTTACAAACGACGCCA
ACAACCAATGACGATTCTGCTTGGTTCGTCGGCACTAATCCCGTCCCTCT
CGCTTCCATGTTTTGTTGAACCTCCATTCAAGCTGCTGCGCTTTGGCTTC
CCTGCCGCTTTGGCTTCTCTGCCGCTTCTTCACCGCCGCCTCCTTCAGCG
AGTCAACCACGGCCTGCCGCGGTGTTTACAGCTGATGCGGGAGGGCATGC
CAGGGCTGCAGGTGGTGGTGCTCCTTGGAAGCCGTTGGGTACATTTGCTG
GGAACCTCCGCGCTCGACGGCTGCCACGTCCTGAGGTGAGGGTACACTCT
CCCTGCAGTGTGGCTAGAGTTAATGCTGTCGGGAAGTTCTTCTTTGGAGT
TTCAGGATCTGAGTGGTGAACGATATTTTGCGGTGGTTATCGGTACTTGT
CATGCTTTGCCCGAACGCTCCCTCTGTGTGCGCTTTCCTTTGGCGAAAAT
TCGACGGTGGACCGCCCGTTCTATGCTGTTACATCCGTCCTGCTGTAAGA
GCATTCTCGTTGTTGCTGCTGCTCCTGCTCCTCAGCCGATTGACTTTCCA
CCCGCCCCCCAAACCGTACTTCCGGCTATTACTCTGGGCATTTGCTTTCT
GTCCGTAGCATGCCGATCACTCCGGCGAATGTGGCCGGCGCGCTGCGGCA
TGTGTTTGCCGCTCCAAAGGCGGCGCGGCCTGACAGCGCCGCGACAGCAT
TGGCGGCGGAGTCTCCCGAAGACGGCATCGCCTGCATAGAGCACCTTTCG
ATAGACCGGCATCGCAGCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11925:146..1266+

>mRNA_P-wetherbeei_contig11925.1.1 ID=mRNA_P-wetherbeei_contig11925.1.1|Name=mRNA_P-wetherbeei_contig11925.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig11925:146..1266+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCCGCGCAAGGTCGGTGCGCCACTCGATGCCAACGCGACGCACATGGC
GGCGCTGCGCGAGGGGACGGCGGCTGCAGGCGGGGAGATGGTCCTGTTTG
CGTCCCATGCGAGGCTGATGAAGAACCTGGCGAGCGCCGCCGTGGGCCTG
CCGTGCGTCGGTGGCGCGCAGGAGCTCGCGGCGGTGGCGGTCGACTCGCA
GCGAGTCAACCACGGCCTGCCGCGGTGTTTACAGCTGATGCGGGAGGGCA
TGCCAGGGCTGCAGGTGGTGGTGCTCCTTGGAAGCCGTTGGGTACATTTG
CTGGGAACCTCCGCGCTCGACGGCTGCCACGTCCTGAGCATGCCGATCAC
TCCGGCGAATGTGGCCGGCGCGCTGCGGCATGTGTTTGCCGCTCCAAAGG
CGGCGCGGCCTGACAGCGCCGCGACAGCATTGGCGGCGGAGTCTCCCGAA
GACGGCATCGCCTGCATAGAGCACCTTTCGATAGACCGGCATCGCAGCGT
G
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