mRNA_P-wetherbeei_contig1184.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1184.2.1
Unique NamemRNA_P-wetherbeei_contig1184.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1184.2.1 vs. uniprot
Match: D7G172_ECTSI (TPX2_importin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G172_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.700e-31
Identity = 102/258 (39.53%), Postives = 145/258 (56.20%), Query Frame = 2 
Query:    8 AHQFRAMVLPDYNKLAAAGLSHKSAGR---KLTDFVPFELTTEARGVAKRVVLEARLRAKEKEEAEAHNVHALPLRPRGPRFMPKPSDRPLTEVCEFHLEGTALHEAAERRLREQAAEEKRRAMEAVQIKALPLPAATYEPDFRFAPPESTLTVPVELTLASTARAAERQAWEHASAERTAAVEAEKAAQXXXXXXAEEAELKRLRSVPASEGGFAFKARPMAWVDEMPLRSRPAPMALTLPVTPNLQTTKRAAARAA 772
            A++FRA  +PDY++L+ +     +A       T+  PF L ++ RG AK+ +L  R+  + ++E  A  V A PL      F P+PSDR LTE  EF L   A HE A +  +++  +E+ RA  A ++ ALPLPAAT+EP+      E +LT P+E  L S+ARA  R  W+  S  R A  E  K   XXXXXX E   +  LR    ++GG +FKA+P+ W    P  ++ +   LT PVTPNL+T +RA   AA
Sbjct:  338 ANKFRARPMPDYSRLSQSRRQSAAAPEVPPAPTEPRPFNLRSDTRGKAKQALLAKRMLDQRRQEDAAARVRARPLPAPSNGFCPQPSDRALTETSEFCLSSQARHEKAAQEFQDRVRKEEERARRATEVIALPLPAATFEPELYPERTEVSLTQPIERVLHSSARAEGRAKWDEESQARQAHEERVKREXXXXXXXXERRSISELRRRSHADGGMSFKAKPIKWNSAPPEVAQLSTAPLTTPVTPNLRTKRRAMNNAA 595
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BLAST of mRNA_P-wetherbeei_contig1184.2.1 vs. uniprot
Match: A0A835SUW9_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SUW9_CHLIN)

HSP 1 Score: 75.5 bits (184), Expect = 2.810e-11
Identity = 85/265 (32.08%), Postives = 114/265 (43.02%), Query Frame = 2 
Query:    2 ETAHQFRAMVLPDYNKLAAAGL--SHKSAGRKLTDFVPFELTTEARGVAKRVVLEARLRAKEKEEAEAHNVHAL--PLRPRGPRFMPKPSDRPLTEVCEFHLEGTALHEAAERRLREQAAEEKRRAMEAVQIKALPLPAATYEPDFRFAPPESTLTVPVELTLASTARAAERQAWEHASAERTAAVEAEKAAQXXXXXXAEEAELKRLRSVPASEGGFAFKARPMAWVDEMPLRSRPAPMA-LTLPVTPNLQTTKRAAARAACER 781
            E  H+F A  +P +  +    L   H       T   PF L TE RG A R V+ ARL A+E     A    AL  P+    P   P+P  + LT    F L   A HE  E + R    EE+       + KA P+        FR     + LTVP E+ L ++ARAAER  +  A  E+    E  +          EE E ++LR          F ARPM  +  +P  ++PAP   LT PV+P L   +RA   A  E+
Sbjct:  401 EPRHEFHARPVPKFLSVPGVELPVGHHGEAAAPTVPEPFRLATEQRGTAHRSVMAARLAAEEDAAKRARVPRALGLPMSTDMPLVPPRPEPKSLTVPEPFGLASEARHEDYEEKRRRALQEEQAARRSEAEFKARPMWKGA---PFRVHDSGAVLTVPEEVPLHTSARAAERDVFNRAVEEKWKEAEVAQQLAAQEARMREEEERRQLRKAAV------FHARPMPDLS-VPAAAKPAPAKPLTKPVSPRLGRKRRAGGAAGEEK 655
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BLAST of mRNA_P-wetherbeei_contig1184.2.1 vs. uniprot
Match: A0A2J8A7H0_9CHLO (Targeting protein for Xklp2 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A7H0_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 2.610e-9
Identity = 85/259 (32.82%), Postives = 114/259 (44.02%), Query Frame = 2 
Query:    2 ETAHQFRAMVLPDYNKLAAAGLSHKSAGRKL-TDFVPFELTTEARGVAKRVVLEARLRAKEK--EEAEAHNVHALPLRPRGPRFMPKPSDRPLTEVCEFHLEGTALH-EAAERRLREQAAEEKRRAMEAVQIKALPLPAATYEPDFRFAPPESTLTVPVELTLASTARAAERQAWEHASAERTAAVEAEKAAQXXXXXXAEEAELKRLRSVPASEGGFAFKARPMAWVDEMPLRSRPAP-MALTLPVTPNLQTTKRAAA 763
            E  H F A  +P +    +  L    A     T   PF+L TE RG   R  + AR+ A++     A     H LPL    P   PKP  RPLT    F L   A H E  E++ R   AE+  +  +A + KA P+        FR     + LTVP ++ L ++ARAAER  +  A A + AA EA            E+ E +R+R          F ARP+  +   P    P P   LT PV+P L  +KR AA
Sbjct:  297 EPRHDFHARPVPRFINGPSMELQQPHAEAAAPTHPAPFKLATEQRGAQYRSTMAARVAAEDDAARRARVPRAHGLPLSTDMPLIPPKPDPRPLTVPEPFGLASEARHGEFQEQKKRAVEAEKAAKRADA-EFKARPMWRGV---PFRVHESTTGLTVPEDVQLHTSARAAERDVFNKAVAAQLAAQEAR---------MREDEERRRVRKAAV------FHARPVPDLSAAPAAKAPVPHKPLTKPVSPRLGRSKRHAA 536
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BLAST of mRNA_P-wetherbeei_contig1184.2.1 vs. uniprot
Match: A0A835SI11_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835SI11_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 1.310e-7
Identity = 80/262 (30.53%), Postives = 106/262 (40.46%), Query Frame = 2 
Query:    2 ETAHQFRAMVLPDYNKLAAAGLSHKSAGRKLTDFVP--FELTTEARGVAKRVVLEARLRAKEKEEAEAHNVHAL--PLRPRGPRFMPKPSDRPLTEVCEFHLEGTALHEAAERRLREQAAEEKRRAMEAVQIKALPL-PAATYEPDFRFAPPESTLTVPVELTLASTARAAERQAWEHASAERTAAVEAEKAAQXXXXXXAEEAELKRLRSVPASEGGFAFKARPMAWVDEMPLRSRPAPMALTLPVTPNLQTTKRAAARAA 772
            E  ++FRA  +P +  +    L     G      VP  F L TE RG A R  + ARL A+E+    A    AL  PL    P   P+P  + LT    F L   A HE                     + KA P+   A + P    A     LTVP E+ LA++ARAAER+ ++ A  E+    E  +          EE E ++LR          F ARPM  +   P         LT PV+P L   KR A + A
Sbjct:  473 EPQYEFRARPVPKFLSVPGVELPAGHHGEPPAPTVPEPFRLATEQRGTAHRSAMAARLAAEEEAAKRARVPRALGLPLSTDMPLVPPRPEPKSLTVPEPFGLASEARHEEHXXXXXXXXXXXXXXRRAEAEFKARPMWKGAPFRPHDSGA----VLTVPEEVPLATSARAAEREVFDRAVQEKWKEAEVAQQLAAQEARMREEEERRQLRKAAV------FHARPMPDLSAPPAAKXXXAKPLTKPVSPRLGRNKRRAGQGA 724
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1184.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G172_ECTSI1.700e-3139.53TPX2_importin domain-containing protein n=1 Tax=Ec... [more]
A0A835SUW9_CHLIN2.810e-1132.08Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A2J8A7H0_9CHLO2.610e-932.82Targeting protein for Xklp2 n=1 Tax=Tetrabaena soc... [more]
A0A835SI11_9CHLO1.310e-730.53Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1184contigP-wetherbeei_contig1184:4042..6001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3055.EDP00281
PFAMsTPX2,TPX2_importin
Model size1030
Max annot lvl3041|Chlorophyta
KEGG koko:K16812
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.14e-06
EggNOG OGs28P45@1|root,2QVQS@2759|Eukaryota,37NVE@33090|Viridiplantae,34P0I@3041|Chlorophyta
DescriptionTargeting protein for Xklp2 (TPX2)
Cds size759
COG categoryS
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1184.2.1prot_P-wetherbeei_contig1184.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1184 4288..5976 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185927.9705503-UTR-P-wetherbeei_contig1184:4041..42871683185927.9705503-UTR-P-wetherbeei_contig1184:4041..4287Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1184 4042..4287 -
1683185928.0134606-UTR-P-wetherbeei_contig1184:5976..60011683185928.0134606-UTR-P-wetherbeei_contig1184:5976..6001Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1184 5977..6001 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185927.979222-CDS-P-wetherbeei_contig1184:4287..45131683185927.979222-CDS-P-wetherbeei_contig1184:4287..4513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1184 4288..4513 -
1683185927.9864712-CDS-P-wetherbeei_contig1184:4809..49851683185927.9864712-CDS-P-wetherbeei_contig1184:4809..4985Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1184 4810..4985 -
1683185927.9937017-CDS-P-wetherbeei_contig1184:5345..55401683185927.9937017-CDS-P-wetherbeei_contig1184:5345..5540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1184 5346..5540 -
1683185928.0010314-CDS-P-wetherbeei_contig1184:5814..59761683185928.0010314-CDS-P-wetherbeei_contig1184:5814..5976Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1184 5815..5976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1184.2.1

>prot_P-wetherbeei_contig1184.2.1 ID=prot_P-wetherbeei_contig1184.2.1|Name=mRNA_P-wetherbeei_contig1184.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=253bp
MVLPDYNKLAAAGLSHKSAGRKLTDFVPFELTTEARGVAKRVVLEARLRA
KEKEEAEAHNVHALPLRPRGPRFMPKPSDRPLTEVCEFHLEGTALHEAAE
RRLREQAAEEKRRAMEAVQIKALPLPAATYEPDFRFAPPESTLTVPVELT
LASTARAAERQAWEHASAERTAAVEAEKAAQERAAKEAEEAELKRLRSVP
ASEGGFAFKARPMAWVDEMPLRSRPAPMALTLPVTPNLQTTKRAAARAAC
ER*
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mRNA from alignment at P-wetherbeei_contig1184:4042..6001-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1184.2.1 ID=mRNA_P-wetherbeei_contig1184.2.1|Name=mRNA_P-wetherbeei_contig1184.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1960bp|location=Sequence derived from alignment at P-wetherbeei_contig1184:4042..6001- (Phaeothamnion wetherbeei SAG_119_79)
GGAAACGGCCCACCAGTTCCGCGCCATGGTGCTGCCTGACTACAACAAGC
TGGCGGCGGCCGGCCTCAGCCACAAATCCGCCGGCAGGAAGCTCACGGAC
TTCGTGCCCTTCGAGCTCACCACCGAGGCGCGCGGTGTCGCCAAGCGAGT
CGTTCTCGAGGCGCGGCTGCGCGCCAAGGAGAAGGAGGTGGGTGCAGTAT
GATGGCGGCGAAGGAGGCAAGGCTGTGTTGACGGCTAGCGGCCTTCGAGG
GGGGCAACTGGCTGCTTTCGGGCGACGGGGGTTGCAACGGCGTGCAGCTT
GAAGCGATTCTTTCCAAACTTGCAAAATTGTCGTCAGTAGGCAGTGGATT
AGGTGGCATCTTGTGAAGCCTTTTGCGATAGGAAATTGATTGCTGATCGG
CTCCTTTTTACGCCAAAAATGTCCGTTGTTGTTTGCCGGCCCCTGTCCTT
GCGGCGAACAGGAGGCGGAGGCGCACAACGTGCATGCCCTGCCGCTGCGG
CCGCGGGGCCCGCGGTTCATGCCCAAGCCATCGGATCGCCCTCTTACCGA
GGTGTGCGAGTTTCATCTAGAAGGGACGGCGCTGCACGAGGCGGCGGAGC
GGCGGCTGCGTGAGCAGGCGGCCGAGGAGAAGCGGCGTGCCATGGAGGCG
GTGCAGGTGAGTAAGCGCCTGGCTGAGGATCGGAAACGATGCGGAGAGAT
GGGCAAACGAACGCGCCGTGCACATATCGGTACTTGGTTCCGTCTCTGCG
TCGAAGAGTTCCGGCGGCTGCTCGGCGGAGCGGAACAGCCGCGAAGGCAG
GCAGCATCACCATCCTGAGTCGACCAGCACATCCCTGCAGCAGCTTCTGC
GCCGCGTCCAGGACAATGGAGCGGAACGGCGAGGCTTCGCTGCTCTCCTC
TCTTCTTCTGGTCGCTGTGGTGCTTTTGCCGCCGCTTGCCTTTCACGTGG
GCGCACTGCACCTTCTCCTGCCGGTTTCTCTTTGACCCTTTGTCTTTACC
GTTTGCCCGGCGTCAGATCAAGGCGCTGCCGCTGCCAGCAGCCACCTACG
AGCCGGACTTCCGCTTCGCGCCGCCCGAGTCGACGCTGACGGTGCCCGTG
GAGCTGACGCTCGCATCCACAGCGCGGGCAGCAGAGCGGCAGGCATGGGA
ACACGCCAGCGCCGAGCGGACAGCGGCCGTCGAGGCCGAAAAGTGAGTGG
GTGGTGGAAGTTGCCAGCAGCCGGTGGTGTTGATGGCGCCTTCGGCTAAA
GCAGTCGTCTTCTTTTTGGATGCTGGCAGGGCCATCTGGGTGGTCCGGCT
TGATGCCTTCTTGTCCAATGAATGGCCGTGTTTTGACAAGTGCAATTTGG
GGGCATTTTGCCGTAGCACTATTCTATTTCTTTGAATGCTTCGCATTTCC
GCTTATCAAGGTGGCGGCTCAACGTTCATGACTTCCCACTTACTGGATCG
CCTTTCCTCTTTCTCCCCTTTCTTCACATTTTCGACAGGGCGGCCCAGGA
ACGCGCAGCCAAGGAGGCCGAGGAAGCGGAGCTGAAGAGGCTGCGCAGCG
TGCCCGCCTCGGAGGGTGGTTTCGCGTTCAAGGCGCGGCCCATGGCGTGG
GTGGACGAGATGCCGCTGCGGTCGCGGCCGGCGCCGATGGCGCTGACCCT
CCCCGTCACGCCCAACCTGCAGACGACCAAGCGTGCGGCGGCGCGGGCGG
CATGCGAGCGCTGAGGCGGCGGCCGCGGGCTGGTGGAGCGTCCCGGGACT
GCGTAAAAGAGGCAGGGTGTAGGATGAGAATGGGATGTTGGTGGCGGCGC
TTTCTGCGCTGCGCTGTTTTGTCAGCTGGCGGTGGCGGCGGGCAGGCCGA
CTTGGCCGCTGTGCTGGCGTTGGCGGCGACGCGGGCAGGGGCGGCGGCAT
TGGGGCTGTGCCGGTGCGATTGGGGCGGCATACATTTTGGGGGAAAAAAG
AGGAAGGTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1184:4042..6001-

>mRNA_P-wetherbeei_contig1184.2.1 ID=mRNA_P-wetherbeei_contig1184.2.1|Name=mRNA_P-wetherbeei_contig1184.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=759bp|location=Sequence derived from alignment at P-wetherbeei_contig1184:4042..6001- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCTGCCTGACTACAACAAGCTGGCGGCGGCCGGCCTCAGCCACAA
ATCCGCCGGCAGGAAGCTCACGGACTTCGTGCCCTTCGAGCTCACCACCG
AGGCGCGCGGTGTCGCCAAGCGAGTCGTTCTCGAGGCGCGGCTGCGCGCC
AAGGAGAAGGAGGAGGCGGAGGCGCACAACGTGCATGCCCTGCCGCTGCG
GCCGCGGGGCCCGCGGTTCATGCCCAAGCCATCGGATCGCCCTCTTACCG
AGGTGTGCGAGTTTCATCTAGAAGGGACGGCGCTGCACGAGGCGGCGGAG
CGGCGGCTGCGTGAGCAGGCGGCCGAGGAGAAGCGGCGTGCCATGGAGGC
GGTGCAGATCAAGGCGCTGCCGCTGCCAGCAGCCACCTACGAGCCGGACT
TCCGCTTCGCGCCGCCCGAGTCGACGCTGACGGTGCCCGTGGAGCTGACG
CTCGCATCCACAGCGCGGGCAGCAGAGCGGCAGGCATGGGAACACGCCAG
CGCCGAGCGGACAGCGGCCGTCGAGGCCGAAAAGGCGGCCCAGGAACGCG
CAGCCAAGGAGGCCGAGGAAGCGGAGCTGAAGAGGCTGCGCAGCGTGCCC
GCCTCGGAGGGTGGTTTCGCGTTCAAGGCGCGGCCCATGGCGTGGGTGGA
CGAGATGCCGCTGCGGTCGCGGCCGGCGCCGATGGCGCTGACCCTCCCCG
TCACGCCCAACCTGCAGACGACCAAGCGTGCGGCGGCGCGGGCGGCATGC
GAGCGCTGA
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