mRNA_P-wetherbeei_contig11831.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11831.2.1
Unique NamemRNA_P-wetherbeei_contig11831.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11831.2.1 vs. uniprot
Match: A0A4Q3C5C3_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A4Q3C5C3_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 7.390e-11
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 MIQKLTTSECRAEVACTVLYLMLRRLSPAEVERLQAEAMAEAKDIGRADILEEVDWLFSEAHR 189
            M QKL+T+EC+AEVA TVL LML+R+ PAEV +L+ EAM    DIG   IL+E    F  A +
Sbjct:    1 MSQKLSTNECQAEVAFTVLALMLQRMHPAEVFKLKKEAMVHFVDIGDDGILDEARVFFQRAQK 63
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11831.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4Q3C5C3_9BACT7.390e-1153.97Uncharacterized protein n=1 Tax=Verrucomicrobiacea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11831contigP-wetherbeei_contig11831:1426..1617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size192
Hectar predicted targeting categoryother localisation
Exons1
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185927.7819922-CDS-P-wetherbeei_contig11831:1425..16171683185927.7819922-CDS-P-wetherbeei_contig11831:1425..1617Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11831 1426..1617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11831.2.1prot_P-wetherbeei_contig11831.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11831 1426..1617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11831.2.1

>prot_P-wetherbeei_contig11831.2.1 ID=prot_P-wetherbeei_contig11831.2.1|Name=mRNA_P-wetherbeei_contig11831.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=64bp
MIQKLTTSECRAEVACTVLYLMLRRLSPAEVERLQAEAMAEAKDIGRADI
LEEVDWLFSEAHR*
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mRNA from alignment at P-wetherbeei_contig11831:1426..1617-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11831.2.1 ID=mRNA_P-wetherbeei_contig11831.2.1|Name=mRNA_P-wetherbeei_contig11831.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig11831:1426..1617- (Phaeothamnion wetherbeei SAG_119_79)
ATGATTCAGAAACTCACGACATCGGAATGCCGCGCGGAAGTCGCCTGCAC
GGTGCTTTACCTCATGCTGAGGCGGCTCAGCCCTGCAGAAGTCGAGCGGC
TTCAAGCGGAAGCGATGGCAGAAGCAAAAGACATCGGCAGGGCCGATATT
CTGGAAGAAGTCGATTGGCTCTTTTCAGAAGCGCATCGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11831:1426..1617-

>mRNA_P-wetherbeei_contig11831.2.1 ID=mRNA_P-wetherbeei_contig11831.2.1|Name=mRNA_P-wetherbeei_contig11831.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig11831:1426..1617- (Phaeothamnion wetherbeei SAG_119_79)
ATGATTCAGAAACTCACGACATCGGAATGCCGCGCGGAAGTCGCCTGCAC
GGTGCTTTACCTCATGCTGAGGCGGCTCAGCCCTGCAGAAGTCGAGCGGC
TTCAAGCGGAAGCGATGGCAGAAGCAAAAGACATCGGCAGGGCCGATATT
CTGGAAGAAGTCGATTGGCTCTTTTCAGAAGCGCATCGCTAG
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