mRNA_P-wetherbeei_contig11809.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11809.1.1
Unique NamemRNA_P-wetherbeei_contig11809.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11809.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11809contigP-wetherbeei_contig11809:2..963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size962
Hectar predicted targeting categoryother localisation
Exons1
Cds size522
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185926.8920326-UTR-P-wetherbeei_contig11809:1..741683185926.8920326-UTR-P-wetherbeei_contig11809:1..74Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11809 2..74 -
1683185926.911813-UTR-P-wetherbeei_contig11809:596..9631683185926.911813-UTR-P-wetherbeei_contig11809:596..963Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11809 597..963 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185926.9020329-CDS-P-wetherbeei_contig11809:74..5961683185926.9020329-CDS-P-wetherbeei_contig11809:74..596Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11809 75..596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11809.1.1prot_P-wetherbeei_contig11809.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11809 75..596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11809.1.1

>prot_P-wetherbeei_contig11809.1.1 ID=prot_P-wetherbeei_contig11809.1.1|Name=mRNA_P-wetherbeei_contig11809.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
MSLICAKRDGVSETPAPFFPRVSPACMLAWNYCGDGLLGVKQGLMQCGLV
PVAQGHRLWVLLSCWLACGTCWFVCGRLPPASRMAAKRSCRSSIIVSRLY
PPFAVAAGRTVLWNGPSKPQPLSLRSRSITFRSSGVTGYARVARGNLVGL
AFRIMQRTDAAPRRLAGWCSLIR*
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mRNA from alignment at P-wetherbeei_contig11809:2..963-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11809.1.1 ID=mRNA_P-wetherbeei_contig11809.1.1|Name=mRNA_P-wetherbeei_contig11809.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=962bp|location=Sequence derived from alignment at P-wetherbeei_contig11809:2..963- (Phaeothamnion wetherbeei SAG_119_79)
TTACTTTGAGCTTTTGAAGCAGCGCTTTCTTGCTGGAACGCGTGGTGATA
GGTTGCCACGGGCGGTTTTCACCAACGGGGTAACTGTGCATCCACAGCGG
TTAACGTGCTCCGGCAGAGCCCCAGAACTTGGCTGAATCTTCCGACACGG
GTGCGGCAAGAACGTGTTGTGAGCTGCTGCTCATTTGGAGTGTCTTGGAC
TGCGTGGAAATACTGAGGACTTCAGCTAGCCGAGCAGCACTCTGGCTGTC
GGAGCGTAGCGCCGCCTTGCTGTGGAGCTGCCCCGGCGGTGAAACTGCAC
AGGGCTCGGAAAAAGTTGCAGCCTCTTGGAGCGTGGCCTGCAACGGGTTT
CCCTACTTTGTGCTTGGATGAGTTTGATTTGCGCAAAGCGCGACGGTGTA
TCTGAGACGCCGGCACCTTTCTTTCCTCGCGTTTCTCCCGCTTGTATGCT
TGCCTGGAACTACTGCGGGGATGGACTGCTCGGGGTTAAGCAGGGGCTTA
TGCAATGCGGCCTCGTTCCCGTAGCTCAGGGACACCGTCTGTGGGTGCTG
CTCTCTTGCTGGCTTGCGTGTGGGACGTGCTGGTTCGTATGTGGAAGGTT
GCCACCGGCGTCTCGGATGGCGGCCAAACGCTCCTGTAGATCCTCAATAA
TCGTGAGTCGGTTGTATCCTCCGTTCGCCGTCGCTGCGGGGCGAACGGTC
TTGTGGAATGGACCTTCGAAGCCCCAACCCTTGTCTCTTAGGAGCCGATC
GATAACTTTCCGCTCTTCAGGAGTGACGGGTTACGCGAGGGTTGCACGAG
GCAACCTCGTTGGACTTGCTTTCAGGATTATGCAACGAACAGACGCCGCT
CCGCGCCGACTCGCTGGATGGTGCAGCTTGATACGGTAGACTTCATCGGC
ACAACGCACCCCGAAGCGTCAACGGCAGCCGATGCCAGGCTGGCAACATA
AGCCTCTGCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11809:2..963-

>mRNA_P-wetherbeei_contig11809.1.1 ID=mRNA_P-wetherbeei_contig11809.1.1|Name=mRNA_P-wetherbeei_contig11809.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig11809:2..963- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTTTGATTTGCGCAAAGCGCGACGGTGTATCTGAGACGCCGGCACC
TTTCTTTCCTCGCGTTTCTCCCGCTTGTATGCTTGCCTGGAACTACTGCG
GGGATGGACTGCTCGGGGTTAAGCAGGGGCTTATGCAATGCGGCCTCGTT
CCCGTAGCTCAGGGACACCGTCTGTGGGTGCTGCTCTCTTGCTGGCTTGC
GTGTGGGACGTGCTGGTTCGTATGTGGAAGGTTGCCACCGGCGTCTCGGA
TGGCGGCCAAACGCTCCTGTAGATCCTCAATAATCGTGAGTCGGTTGTAT
CCTCCGTTCGCCGTCGCTGCGGGGCGAACGGTCTTGTGGAATGGACCTTC
GAAGCCCCAACCCTTGTCTCTTAGGAGCCGATCGATAACTTTCCGCTCTT
CAGGAGTGACGGGTTACGCGAGGGTTGCACGAGGCAACCTCGTTGGACTT
GCTTTCAGGATTATGCAACGAACAGACGCCGCTCCGCGCCGACTCGCTGG
ATGGTGCAGCTTGATACGGTAG
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