mRNA_P-wetherbeei_contig11775.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11775.1.1
Unique NamemRNA_P-wetherbeei_contig11775.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11775.1.1 vs. uniprot
Match: A0A835ZG79_9STRA (Sulfate transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG79_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.240e-9
Identity = 38/105 (36.19%), Postives = 51/105 (48.57%), Query Frame = 2 
Query:    2 SLMPPFIYMLLGTCQQMSFGVTAIESILVRRKDQNDAHKYLRLNPLSFLVQPPKSLLLVFFFQMNSLLCAASSIEQLADSVRGVIGDEVADSDDPVTISLNVQYT 316
            SLMPPFIYML+GTC Q+SFGVTAIE++                                                 L +SVRGV+GD++ +S+DPV I++ V+YT
Sbjct:  148 SLMPPFIYMLMGTCAQVSFGVTAIEALF------------------------------------------------LGESVRGVLGDDIVESEDPVDINIVVKYT 204
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BLAST of mRNA_P-wetherbeei_contig11775.1.1 vs. uniprot
Match: A0A835Z9Z9_9STRA (Sulfate transporter family-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Z9_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.250e-7
Identity = 35/105 (33.33%), Postives = 49/105 (46.67%), Query Frame = 2 
Query:    2 SLMPPFIYMLLGTCQQMSFGVTAIESILVRRKDQNDAHKYLRLNPLSFLVQPPKSLLLVFFFQMNSLLCAASSIEQLADSVRGVIGDEVADSDDPVTISLNVQYT 316
            SLMPPFIYML+GTC Q+SFGVTAIE++                                                 L +SVRGV+GD++ +S+D   +++ V+YT
Sbjct:  132 SLMPPFIYMLMGTCSQISFGVTAIEALF------------------------------------------------LGESVRGVLGDDIIESEDDADVNIVVRYT 188
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BLAST of mRNA_P-wetherbeei_contig11775.1.1 vs. uniprot
Match: A0A836CLR3_9STRA (Sulfate transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLR3_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 8.760e-5
Identity = 22/29 (75.86%), Postives = 28/29 (96.55%), Query Frame = 2 
Query:    2 SLMPPFIYMLLGTCQQMSFGVTAIESILV 88
            SLMPPFIYMLLG+C Q+SFGVTAIE++++
Sbjct:  140 SLMPPFIYMLLGSCAQISFGVTAIEALVL 168
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11775.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZG79_9STRA2.240e-936.19Sulfate transporter family-domain-containing prote... [more]
A0A835Z9Z9_9STRA1.250e-733.33Sulfate transporter family-domain-containing prote... [more]
A0A836CLR3_9STRA8.760e-575.86Sulfate transporter family-domain-containing prote... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11775contigP-wetherbeei_contig11775:224..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size316
Hectar predicted targeting categorysignal peptide
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185925.783119-CDS-P-wetherbeei_contig11775:223..5321683185925.783119-CDS-P-wetherbeei_contig11775:223..532Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11775 224..532 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185925.7950304-UTR-P-wetherbeei_contig11775:532..5391683185925.7950304-UTR-P-wetherbeei_contig11775:532..539Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11775 533..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11775.1.1prot_P-wetherbeei_contig11775.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11775 224..532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11775.1.1

>prot_P-wetherbeei_contig11775.1.1 ID=prot_P-wetherbeei_contig11775.1.1|Name=mRNA_P-wetherbeei_contig11775.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
MPPFIYMLLGTCQQMSFGVTAIESILVRRKDQNDAHKYLRLNPLSFLVQP
PKSLLLVFFFQMNSLLCAASSIEQLADSVRGVIGDEVADSDDPVTISLNV
QYT
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mRNA from alignment at P-wetherbeei_contig11775:224..539-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11775.1.1 ID=mRNA_P-wetherbeei_contig11775.1.1|Name=mRNA_P-wetherbeei_contig11775.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=316bp|location=Sequence derived from alignment at P-wetherbeei_contig11775:224..539- (Phaeothamnion wetherbeei SAG_119_79)
GTCGCTGATGCCGCCTTTCATCTACATGCTTCTCGGCACCTGCCAGCAGA
TGAGCTTCGGTGTCACCGCCATCGAGTCCATCCTGGTGAGGAGGAAAGAC
CAGAATGACGCCCACAAATATCTCAGACTAAATCCGCTCTCATTCCTGGT
TCAGCCTCCCAAGTCGCTTCTTCTCGTCTTCTTTTTTCAAATGAACTCCC
TGCTTTGCGCTGCGTCCTCGATCGAGCAGCTCGCCGACTCGGTGCGCGGC
GTGATCGGAGACGAAGTAGCTGACAGTGACGACCCCGTCACGATCTCACT
CAATGTGCAGTACACA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11775:224..539-

>mRNA_P-wetherbeei_contig11775.1.1 ID=mRNA_P-wetherbeei_contig11775.1.1|Name=mRNA_P-wetherbeei_contig11775.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig11775:224..539- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCTTTCATCTACATGCTTCTCGGCACCTGCCAGCAGATGAGCTT
CGGTGTCACCGCCATCGAGTCCATCCTGGTGAGGAGGAAAGACCAGAATG
ACGCCCACAAATATCTCAGACTAAATCCGCTCTCATTCCTGGTTCAGCCT
CCCAAGTCGCTTCTTCTCGTCTTCTTTTTTCAAATGAACTCCCTGCTTTG
CGCTGCGTCCTCGATCGAGCAGCTCGCCGACTCGGTGCGCGGCGTGATCG
GAGACGAAGTAGCTGACAGTGACGACCCCGTCACGATCTCACTCAATGTG
CAGTACACA
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