mRNA_P-wetherbeei_contig11773.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11773.4.1
Unique NamemRNA_P-wetherbeei_contig11773.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11773.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11773contigP-wetherbeei_contig11773:1100..1466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size175
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185925.6779685-CDS-P-wetherbeei_contig11773:1099..11851683185925.6779685-CDS-P-wetherbeei_contig11773:1099..1185Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11773 1100..1185 +
1683185925.6989021-CDS-P-wetherbeei_contig11773:1378..14661683185925.6989021-CDS-P-wetherbeei_contig11773:1378..1466Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11773 1379..1466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11773.4.1prot_P-wetherbeei_contig11773.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11773 1100..1466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11773.4.1

>prot_P-wetherbeei_contig11773.4.1 ID=prot_P-wetherbeei_contig11773.4.1|Name=mRNA_P-wetherbeei_contig11773.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp
IERATGAGYTLRTLTPPEGPAHFINQRRQPASVAGGGVILKTADAFLCRA
RATYNGSA
back to top

mRNA from alignment at P-wetherbeei_contig11773:1100..1466+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11773.4.1 ID=mRNA_P-wetherbeei_contig11773.4.1|Name=mRNA_P-wetherbeei_contig11773.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=367bp|location=Sequence derived from alignment at P-wetherbeei_contig11773:1100..1466+ (Phaeothamnion wetherbeei SAG_119_79)
ATAGAGCGAGCCACGGGGGCAGGCTATACGCTTCGGACGTTGACACCGCC
GGAGGGCCCAGCTCATTTTATAAACCAACGCCGTCAGTACGTTTTCTCCT
TTTTAGAATGTTGGGTTTGTGTTTTTTATTGCATCGCAAGAACGGTGAAA
GCGTGGCGAGGAATAGCTTCTGGAATGAAAGATCGAGTGGTCGGTCTGTC
CCTTGTAGCTGCACCTCAACGGAAACCCCCCCGCGGTGTGCGCTCCCTGC
CCCGCACGCCCCGCCCGCCCCACATGCAGGCCGGCCAGCGTCGCCGGGGG
CGGAGTGATCCTGAAGACTGCTGACGCGTTTCTCTGTCGGGCGCGGGCAA
CATACAACGGTAGCGCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11773:1100..1466+

>mRNA_P-wetherbeei_contig11773.4.1 ID=mRNA_P-wetherbeei_contig11773.4.1|Name=mRNA_P-wetherbeei_contig11773.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig11773:1100..1466+ (Phaeothamnion wetherbeei SAG_119_79)
ATAGAGCGAGCCACGGGGGCAGGCTATACGCTTCGGACGTTGACACCGCC
GGAGGGCCCAGCTCATTTTATAAACCAACGCCGTCAGCCGGCCAGCGTCG
CCGGGGGCGGAGTGATCCTGAAGACTGCTGACGCGTTTCTCTGTCGGGCG
CGGGCAACATACAACGGTAGCGCG
back to top