mRNA_P-wetherbeei_contig11725.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11725.1.1
Unique NamemRNA_P-wetherbeei_contig11725.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11725.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11725contigP-wetherbeei_contig11725:2..1425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size928
Hectar predicted targeting categoryother localisation
Exons3
Cds size927
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185924.0989969-CDS-P-wetherbeei_contig11725:1..2311683185924.0989969-CDS-P-wetherbeei_contig11725:1..231Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11725 2..231 -
1683185924.1075706-CDS-P-wetherbeei_contig11725:421..8571683185924.1075706-CDS-P-wetherbeei_contig11725:421..857Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11725 422..857 -
1683185924.1162193-CDS-P-wetherbeei_contig11725:1164..14251683185924.1162193-CDS-P-wetherbeei_contig11725:1164..1425Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11725 1165..1425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11725.1.1prot_P-wetherbeei_contig11725.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11725 2..1425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11725.1.1

>prot_P-wetherbeei_contig11725.1.1 ID=prot_P-wetherbeei_contig11725.1.1|Name=mRNA_P-wetherbeei_contig11725.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=309bp
RLVRLAASTVPAPHSATPAAVLAAVAAAPGTCLQVGEAVPKGGGGWGSGI
LTGPFVRGYQSIRRRANTETPSTLAAGPLALTAYALPGDGRRPPEILCAV
LGTDWALRVYALESHRELCGLDLAPHAGSRGDRGGGGCLGGSLQGLPSSI
FSVGEAALSAPTRRPVIAPGETLEAVLTMAAPPEGGARRGDGVADMLEER
EGGRDSCGGGGGNGWSQKRELSLEFVATIAPKGAASRHFVCRFSATGGAA
AFANTTLTLGAELSPPDDDVFLVDAAVDSAGTVWTLWRGGGGGGGEGGGD
RMDGVVASA
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mRNA from alignment at P-wetherbeei_contig11725:2..1425-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11725.1.1 ID=mRNA_P-wetherbeei_contig11725.1.1|Name=mRNA_P-wetherbeei_contig11725.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1424bp|location=Sequence derived from alignment at P-wetherbeei_contig11725:2..1425- (Phaeothamnion wetherbeei SAG_119_79)
CGGCTGGTGCGGCTGGCCGCGTCGACGGTGCCAGCGCCGCACTCCGCCAC
CCCGGCGGCGGTGCTGGCGGCCGTGGCGGCGGCGCCGGGGACGTGCCTCC
AGGTGGGGGAAGCGGTGCCGAAGGGCGGCGGCGGGTGGGGCAGCGGTATC
CTCACGGGGCCGTTCGTGCGGGGCTACCAGTCCATCCGGCGGCGGGCCAA
CACAGAGACACCATCGACGCTCGCCGCGGGGCCGCTGGCGCTGACGGCCT
ATGCGTTGCCGGTGAGTGAATGGGCAGAAGGTGACCGTCTGCGCCAAGAT
GCTTTCTTCTTTCAGAGCACGTGAATGGCCCGAAATGTGGGGCATGTTGT
ACCTGTCGCGTTCCTGATCCTGACGTCCCTCTCTCTTTCTTCTTCCTCCT
CCGTTGCTGTTTTGTTTTGCAACCGCTCCATTGCCACTCTAACGCACCAC
GCCGCTCCCAACGTCTGTCCCACCGCCTCTTCCTCTTGTCGCTGCTGGCC
TGTCGTCGGCCGCGCTCTACCGCGGTGTGTTCCTTTCTTCCCGGCTCTCA
TGCACACGAAATGCGCAGGGAGACGGCAGGCGGCCGCCGGAGATACTGTG
CGCGGTGCTGGGCACCGACTGGGCCCTCCGCGTCTATGCGCTCGAGTCCC
ACCGCGAGCTCTGTGGCCTGGACCTCGCCCCGCATGCCGGGTCCCGCGGT
GACCGCGGCGGTGGCGGCTGTTTGGGCGGCAGCTTGCAGGGGCTGCCCAG
CAGCATCTTCAGCGTGGGCGAGGCGGCGCTGTCGGCGCCGACGCGGCGGC
CCGTCATTGCGCCGGGGGAGACGCTCGAGGCGGTGTTAACGATGGCGGCG
CCGCCGGAGGGGGGCGCCAGGAGAGGGGACGGCGTGGCTGACATGTTAGA
AGAGAGGGAGGGCGGCAGGGACAGCTGCGGTGGCGGCGGCGGCAATGGTT
GGAGCCAGAAACGCGAGCTGTCCTTGGAGTTTGTAGCGACGATCGCGCCG
AAAGGTGAGCCGAGCTGGAAGAGGGCGGGTGTGTTCAGGCCGTATTTGTG
TTCTTTGAGTCGGGACAAATCGCTTCGCCTGCATTATGTTATCTTTAGCA
TGTCCCCGTTGGTTTCCAGGTAGAGAACGCCGTTGACTCAGAAAACGCCG
GGTCCTTTTCTTCGAACCGCTTTCTCGGCCTGGCATTGCTACAGGGGCGG
CTTCGCGGCACTTCGTCTGCCGCTTCTCCGCGACAGGCGGCGCCGCCGCT
TTCGCAAACACGACGCTAACGCTCGGCGCGGAGCTCAGCCCGCCAGATGA
CGACGTGTTTCTCGTGGACGCCGCCGTTGACTCCGCCGGTACCGTCTGGA
CGCTCTGGCGGGGCGGCGGTGGCGGCGGCGGCGAAGGCGGTGGCGACCGC
ATGGACGGTGTCGTTGCGTCGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11725:2..1425-

>mRNA_P-wetherbeei_contig11725.1.1 ID=mRNA_P-wetherbeei_contig11725.1.1|Name=mRNA_P-wetherbeei_contig11725.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=927bp|location=Sequence derived from alignment at P-wetherbeei_contig11725:2..1425- (Phaeothamnion wetherbeei SAG_119_79)
CGGCTGGTGCGGCTGGCCGCGTCGACGGTGCCAGCGCCGCACTCCGCCAC
CCCGGCGGCGGTGCTGGCGGCCGTGGCGGCGGCGCCGGGGACGTGCCTCC
AGGTGGGGGAAGCGGTGCCGAAGGGCGGCGGCGGGTGGGGCAGCGGTATC
CTCACGGGGCCGTTCGTGCGGGGCTACCAGTCCATCCGGCGGCGGGCCAA
CACAGAGACACCATCGACGCTCGCCGCGGGGCCGCTGGCGCTGACGGCCT
ATGCGTTGCCGGGAGACGGCAGGCGGCCGCCGGAGATACTGTGCGCGGTG
CTGGGCACCGACTGGGCCCTCCGCGTCTATGCGCTCGAGTCCCACCGCGA
GCTCTGTGGCCTGGACCTCGCCCCGCATGCCGGGTCCCGCGGTGACCGCG
GCGGTGGCGGCTGTTTGGGCGGCAGCTTGCAGGGGCTGCCCAGCAGCATC
TTCAGCGTGGGCGAGGCGGCGCTGTCGGCGCCGACGCGGCGGCCCGTCAT
TGCGCCGGGGGAGACGCTCGAGGCGGTGTTAACGATGGCGGCGCCGCCGG
AGGGGGGCGCCAGGAGAGGGGACGGCGTGGCTGACATGTTAGAAGAGAGG
GAGGGCGGCAGGGACAGCTGCGGTGGCGGCGGCGGCAATGGTTGGAGCCA
GAAACGCGAGCTGTCCTTGGAGTTTGTAGCGACGATCGCGCCGAAAGGGG
CGGCTTCGCGGCACTTCGTCTGCCGCTTCTCCGCGACAGGCGGCGCCGCC
GCTTTCGCAAACACGACGCTAACGCTCGGCGCGGAGCTCAGCCCGCCAGA
TGACGACGTGTTTCTCGTGGACGCCGCCGTTGACTCCGCCGGTACCGTCT
GGACGCTCTGGCGGGGCGGCGGTGGCGGCGGCGGCGAAGGCGGTGGCGAC
CGCATGGACGGTGTCGTTGCGTCGGCG
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