mRNA_P-wetherbeei_contig11721.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11721.2.1
Unique NamemRNA_P-wetherbeei_contig11721.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11721.2.1 vs. uniprot
Match: UPI0019C3FD5A (ATP-binding protein n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019C3FD5A)

HSP 1 Score: 210 bits (534), Expect = 1.300e-67
Identity = 103/140 (73.57%), Postives = 114/140 (81.43%), Query Frame = 1
Query:    1 MLRLNRVFPARLHAFEQVKVLIDEFSAAAELGGEDRHKLTLIVEELFTNTINHGHRGDSDSPVFITLEKDQADVLLVYEDSAPPFDPFAAGKRTDIESTITERRVGGLGIFLTISLTEKITYSYQGGRNNIRLRFVASQD 420
            M R+NRVFPARL AF+QVK LIDEF A AELG EDRHKLTLIVEELFTNT+NHGHRGDSD+PVFI  E D  DV L+YEDSAP FDP AAG RTDI+ST  ER+VGGLGIF+TI LTEK  YSY  GRN I LR  A+++
Sbjct:    9 MHRMNRVFPARLRAFDQVKALIDEFGAVAELGREDRHKLTLIVEELFTNTVNHGHRGDSDAPVFIAFEVDDGDVQLIYEDSAPQFDPLAAGNRTDIDSTTRERKVGGLGIFITIGLTEKADYSYVEGRNRICLRLAATRN 148          
BLAST of mRNA_P-wetherbeei_contig11721.2.1 vs. uniprot
Match: A0A6M4HAH7_9PROT (HATPase_c domain-containing protein n=1 Tax=Usitatibacter palustris TaxID=2732487 RepID=A0A6M4HAH7_9PROT)

HSP 1 Score: 124 bits (311), Expect = 8.100e-34
Identity = 61/130 (46.92%), Postives = 81/130 (62.31%), Query Frame = 1
Query:   19 VFPARLHAFEQVKVLIDEFSAAAELGGEDRHKLTLIVEELFTNTINHGHRGDSDSPVFITLEKDQADVLLVYEDSAPPFDPFAAGKRTDIESTITERRVGGLGIFLTISLTEKITYSYQGGRNNIRLRFV 408
            +FP+RL A++Q +  I+ F   A        KL L++EELF NT+ HGHRG SD+PV+++L  D  +V L YED APPF+PFA   R  +E+ +  RR GGLG+ L   LTE   YSY  GRN I L+  
Sbjct:   10 MFPSRLEAWKQARAFIEGFCEGAGTKRPSCLKLCLVIEELFLNTVKHGHRGGSDAPVWVSLAADGDEVALTYEDRAPPFNPFARATRELLEALVDTRREGGLGVLLAHGLTESAEYSYIFGRNRISLKLA 139          
BLAST of mRNA_P-wetherbeei_contig11721.2.1 vs. uniprot
Match: UPI0019AC0FB3 (ATP-binding protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019AC0FB3)

HSP 1 Score: 117 bits (292), Expect = 4.990e-31
Identity = 60/133 (45.11%), Postives = 78/133 (58.65%), Query Frame = 1
Query:   19 VFPARLHAFEQVKVLIDEFSAAAELGGEDRHKLTLIVEELFTNTINHGHRGDSDSPVFITLEKDQADVLLVYEDSAPPFDPFAAGKRTDIESTITERRVGGLGIFLTISLTEKITYSYQGGRNNIRLRFVASQ 417
            +F +R  A+ Q +  I+ F   A +  +   K  L+VEELF NT+ HGHRG SD+PV+IT+E     V L YED APPF+PFA   R  +E+    RR GGLG+ L   LT    Y+Y  GRN IRL    S+
Sbjct:    1 MFQSRPEAWRQARAFIEGFCRDAGIARDASLKANLVVEELFLNTVKHGHRGGSDAPVWITMEATDGAVSLTYEDRAPPFNPFARATREMLEALAETRREGGLGVILAHGLTASADYAYLFGRNRIRLTLRESR 133          
BLAST of mRNA_P-wetherbeei_contig11721.2.1 vs. uniprot
Match: A0A1P8FHB8_9PROT (HATPase_c domain-containing protein n=1 Tax=Betaproteobacteria bacterium GR16-43 TaxID=1904640 RepID=A0A1P8FHB8_9PROT)

HSP 1 Score: 115 bits (288), Expect = 1.850e-30
Identity = 57/127 (44.88%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   19 VFPARLHAFEQVKVLIDEFSAAAELGGEDRHKLTLIVEELFTNTINHGHRGDSDSPVFITLEKDQADVLLVYEDSAPPFDPFAAGKRTDIESTITERRVGGLGIFLTISLTEKITYSYQGGRNNIRL 399
            +FP+RL  +++ +  I+ F   A +  +   KL L++EELF NT+ HGHRG SD+PV+I L      V L YED +PPF+PFA   R  +E+    RR GGLG+ L   LT    Y+Y  GRN IRL
Sbjct:    1 MFPSRLEHWKRARGFIESFCEGATIPRQGCLKLCLVLEELFLNTVKHGHRGGSDAPVWIRLSASDGQVSLTYEDRSPPFNPFARATREMLEALAETRREGGLGVLLAHGLTSTADYAYLYGRNRIRL 127          
BLAST of mRNA_P-wetherbeei_contig11721.2.1 vs. uniprot
Match: A0A2U1RRH8_9PROT (HATPase_c domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A2U1RRH8_9PROT)

HSP 1 Score: 117 bits (293), Expect = 2.870e-30
Identity = 58/131 (44.27%), Postives = 79/131 (60.31%), Query Frame = 1
Query:   19 VFPARLHAFEQVKVLIDEFSAAAELGGEDRHKLTLIVEELFTNTINHGHRGDSDSPVFITLEKDQADVLLVYEDSAPPFDPFAAGKRTDIESTITERRVGGLGIFLTISLTEKITYSYQGGRNNIRLRFVA 411
            +FP+R  +    +  ++ F   A +  +   KL L+VEELF NT+ HGHRG +D+PV+IT+E  + +V L YED AP F+PFA G R  +E+    RR GGLG+ L   LT    Y+Y  GRN IRL   A
Sbjct:   79 MFPSRQESLRDARAFLEGFCEGAGVPRQACLKLNLVVEELFLNTVKHGHRGGADAPVWITIEAQEGEVRLTYEDQAPAFNPFAPGTRELLEALAPTRREGGLGVLLAHGLTTASEYAYLFGRNRIRLALPA 209          
BLAST of mRNA_P-wetherbeei_contig11721.2.1 vs. uniprot
Match: A0A2V6VDY1_9BACT (ATP-binding protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6VDY1_9BACT)

HSP 1 Score: 115 bits (287), Expect = 4.650e-30
Identity = 57/129 (44.19%), Postives = 76/129 (58.91%), Query Frame = 1
Query:   13 NRVFPARLHAFEQVKVLIDEFSAAAELGGEDRHKLTLIVEELFTNTINHGHRGDSDSPVFITLEKDQADVLLVYEDSAPPFDPFAAGKRTDIESTITERRVGGLGIFLTISLTEKITYSYQGGRNNIRL 399
            +R F AR  A  +V   + +   AA LG E   +L L++EELFTNT+ HG+ GDSD PV +  E     + L YED+APP DPFAA    D  + + ER VGGLG+ L  ++ E++ Y   G RN I L
Sbjct:   16 HRTFAARRRALPEVTAFVADVCEAARLGREPSLRLRLLIEELFTNTLEHGYGGDSDGPVELAFEVGSDAIALTYEDAAPPHDPFAALSPPDERTAVEERGVGGLGVLLVAAMAEQVRYRRAGDRNRISL 144          
BLAST of mRNA_P-wetherbeei_contig11721.2.1 vs. uniprot
Match: A0A6M4H0H5_9PROT (HATPase_c domain-containing protein n=1 Tax=Usitatibacter rugosus TaxID=2732067 RepID=A0A6M4H0H5_9PROT)

HSP 1 Score: 112 bits (279), Expect = 4.510e-29
Identity = 56/127 (44.09%), Postives = 79/127 (62.20%), Query Frame = 1
Query:   19 VFPARLHAFEQVKVLIDEFSAAAELGGEDRHKLTLIVEELFTNTINHGHRGDSDSPVFITLEKDQADVLLVYEDSAPPFDPFAAGKRTDIESTITERRVGGLGIFLTISLTEKITYSYQGGRNNIRL 399
            +F +RL ++++ +  I+ F  A+ +  +   K+ L++EELF NT+ HGHRG SD+PV+I L  D   V L YED APPF+PFA   R  +E+    RR GGLG+ L   LT    Y+Y  GRN I+L
Sbjct:    3 MFTSRLDSWKRARGFIEGFCEASGVPRDSCLKVCLVLEELFLNTVKHGHRGGSDAPVWIRLTADDGQVSLTYEDRAPPFNPFARATREMLEALAETRREGGLGVLLAHGLTATSEYAYLYGRNRIQL 129          
BLAST of mRNA_P-wetherbeei_contig11721.2.1 vs. uniprot
Match: A0A536W671_9PROT (ATP-binding protein n=5 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536W671_9PROT)

HSP 1 Score: 109 bits (273), Expect = 4.840e-28
Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 1
Query:   22 FPARLHAFEQVKVLIDEFSAAAELGGEDRHKLTLIVEELFTNTINHGHRGDSDSPVFITLEKDQADVLLVYEDSAPPFDPFAAGKRTDIESTITERRVGGLGIFLTISLTEKITYSYQGGRNNIRLRFV 408
            FPAR+ +  +++  ++     A +G ED  KL LIVEELFTNT+ HG+R +S+SPV+I  +       L YED+APP +PF   + TD    I ++ VGGLG+ L  SL     YS +G RN IR+ F 
Sbjct:    9 FPARMDSMAEIRSFVEHACTTAGIGREDCLKLLLIVEELFTNTVTHGYREESESPVWIAFDPCDTGFTLRYEDAAPPHNPFGEYRPTDTAVLIAQQPVGGLGLKLIRSLATDAGYSREGERNCIRITFA 137          
BLAST of mRNA_P-wetherbeei_contig11721.2.1 vs. uniprot
Match: A0A537CND2_9PROT (ATP-binding protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537CND2_9PROT)

HSP 1 Score: 107 bits (268), Expect = 2.920e-27
Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 1
Query:   19 VFPARLHAFEQVKVLIDEFSAAAELGGEDRHKLTLIVEELFTNTINHGHRGDSDSPVFITLEKDQADVLLVYEDSAPPFDPFAA--GKRTDIESTITERRVGGLGIFLTISLTEKITYSYQGGRNNIRL 399
            +FP+RL     +   + +F   A +  E   +L L+VEELF NTI HGHR D D+PV+++LE     V + YED+APPF+P+A    K  D+ +T+  R +GGLG+ LT  L     Y+Y  GRN IRL
Sbjct:   12 MFPSRLAELRPLSAFLTDFCDQAGIERERCLRLHLVVEELFINTIRHGHRKDCDAPVWVSLEAGPRAVQVTYEDTAPPFNPYAKLPDKPIDMTTTLERRAIGGLGVLLTKELAATRDYAYVFGRNRIRL 140          
BLAST of mRNA_P-wetherbeei_contig11721.2.1 vs. uniprot
Match: A0A2V7CK02_9BACT (HATPase_c domain-containing protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7CK02_9BACT)

HSP 1 Score: 108 bits (269), Expect = 3.480e-27
Identity = 55/136 (40.44%), Postives = 79/136 (58.09%), Query Frame = 1
Query:   13 NRVFPARLHAFEQVKVLIDEFSAAAELGGEDRHKLTLIVEELFTNTINHGHRGDSDSPVFITLEKDQADVLLVYEDSAPPFDPFAAGKRTDIESTITERRVGGLGIFLTISLTEKITYSYQGGRNNIRLRFVASQD 420
            N VFPAR      V   I +  A + +  +   +LTL+VEELFTNT+ HGH  DS++PV++  E     + L YED+A P DPFA  +  D  + + ER +GGLG+ L  ++ E++ Y++ GGRN I L      D
Sbjct:   27 NGVFPARRDTLPAVAQFIADMCAVSGVPRKACLRLTLLVEELFTNTVVHGHGADSEAPVYLAFEIRPGWIALTYEDTARPHDPFARVRVPDETAGVDERSLGGLGVLLVTAMAERVQYAHVGGRNRISLLMPTPAD 162          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11721.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019C3FD5A1.300e-6773.57ATP-binding protein n=1 Tax=Prolixibacteraceae bac... [more]
A0A6M4HAH7_9PROT8.100e-3446.92HATPase_c domain-containing protein n=1 Tax=Usitat... [more]
UPI0019AC0FB34.990e-3145.11ATP-binding protein n=1 Tax=Burkholderiales bacter... [more]
A0A1P8FHB8_9PROT1.850e-3044.88HATPase_c domain-containing protein n=1 Tax=Betapr... [more]
A0A2U1RRH8_9PROT2.870e-3044.27HATPase_c domain-containing protein n=1 Tax=Betapr... [more]
A0A2V6VDY1_9BACT4.650e-3044.19ATP-binding protein n=1 Tax=Candidatus Rokubacteri... [more]
A0A6M4H0H5_9PROT4.510e-2944.09HATPase_c domain-containing protein n=1 Tax=Usitat... [more]
A0A536W671_9PROT4.840e-2843.41ATP-binding protein n=5 Tax=Betaproteobacteria bac... [more]
A0A537CND2_9PROT2.920e-2743.41ATP-binding protein n=2 Tax=Betaproteobacteria bac... [more]
A0A2V7CK02_9BACT3.480e-2740.44HATPase_c domain-containing protein n=1 Tax=Candid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11721contigP-wetherbeei_contig11721:1435..1857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1120983.KB894571_gene2452
PFAMsHATPase_c_2
Model size423
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.13e-17
EggNOG OGsCOG2172@1|root,COG2172@2|Bacteria,1N9RD@1224|Proteobacteria,2UCGB@28211|Alphaproteobacteria
DescriptionHistidine kinase-like ATPase domain
Cds size423
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185924.0108118-CDS-P-wetherbeei_contig11721:1434..18571683185924.0108118-CDS-P-wetherbeei_contig11721:1434..1857Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11721 1435..1857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11721.2.1prot_P-wetherbeei_contig11721.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11721 1435..1857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11721.2.1

>prot_P-wetherbeei_contig11721.2.1 ID=prot_P-wetherbeei_contig11721.2.1|Name=mRNA_P-wetherbeei_contig11721.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
MLRLNRVFPARLHAFEQVKVLIDEFSAAAELGGEDRHKLTLIVEELFTNT
INHGHRGDSDSPVFITLEKDQADVLLVYEDSAPPFDPFAAGKRTDIESTI
TERRVGGLGIFLTISLTEKITYSYQGGRNNIRLRFVASQD*
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mRNA from alignment at P-wetherbeei_contig11721:1435..1857-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11721.2.1 ID=mRNA_P-wetherbeei_contig11721.2.1|Name=mRNA_P-wetherbeei_contig11721.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig11721:1435..1857- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCGCCTGAATCGCGTCTTTCCCGCGCGCCTGCATGCCTTCGAGCA GGTCAAGGTACTGATTGATGAATTCTCTGCCGCGGCCGAACTTGGCGGCG AGGATCGCCACAAACTGACGCTAATTGTCGAGGAATTGTTCACCAATACG ATAAATCACGGCCACAGGGGAGACAGTGACTCGCCTGTCTTCATCACCCT GGAGAAAGACCAGGCGGACGTGCTGTTGGTCTATGAAGATTCCGCACCGC CGTTCGACCCGTTCGCCGCCGGAAAGCGAACAGATATCGAGTCGACCATT ACGGAGCGTCGCGTCGGCGGATTGGGAATATTTCTCACCATCAGCCTCAC CGAAAAAATCACCTATAGCTACCAGGGCGGGCGCAATAACATCCGCCTGC GGTTTGTCGCGAGCCAGGATTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11721:1435..1857-

>mRNA_P-wetherbeei_contig11721.2.1 ID=mRNA_P-wetherbeei_contig11721.2.1|Name=mRNA_P-wetherbeei_contig11721.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig11721:1435..1857- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCGCCTGAATCGCGTCTTTCCCGCGCGCCTGCATGCCTTCGAGCA
GGTCAAGGTACTGATTGATGAATTCTCTGCCGCGGCCGAACTTGGCGGCG
AGGATCGCCACAAACTGACGCTAATTGTCGAGGAATTGTTCACCAATACG
ATAAATCACGGCCACAGGGGAGACAGTGACTCGCCTGTCTTCATCACCCT
GGAGAAAGACCAGGCGGACGTGCTGTTGGTCTATGAAGATTCCGCACCGC
CGTTCGACCCGTTCGCCGCCGGAAAGCGAACAGATATCGAGTCGACCATT
ACGGAGCGTCGCGTCGGCGGATTGGGAATATTTCTCACCATCAGCCTCAC
CGAAAAAATCACCTATAGCTACCAGGGCGGGCGCAATAACATCCGCCTGC
GGTTTGTCGCGAGCCAGGATTAG
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