mRNA_P-wetherbeei_contig1172.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1172.1.1
Unique NamemRNA_P-wetherbeei_contig1172.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1172.1.1 vs. uniprot
Match: A0A6H5JQA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQA1_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.290e-17
Identity = 111/259 (42.86%), Postives = 150/259 (57.92%), Query Frame = 1
Query:   97 NKRYLILTYAAEFDRIHYPLPLAHEDRPRPEALQRTIHRLRERLAAAEAGGNGHVAAAAKQAARAVSSAEAXXGANGNSGATVVARLRADNAQLRRQ-------LEDALDAARRAMATXXXXXXXXXXXXXXXXXXXXXXXTTGAPPGQR--KLRLQVEELQAELEQLTEQHERLRADSAREIRRLRREARDAXXXXXXAASVRRRA----ALLEEAVEEARQVAQRLVARHQREVSTLARDLDREMTAGRGLRSRLRE 834
            + RYLILTYAAE+DR+HYPLPLA  D P+ + L+RTI RLRE L+                  R++ +A      + N  A   A+L A+N +LRRQ       LE+AL  ARR    XXXXXXXXXXXXXXXXXXXXXXX           KL   VE+ Q++L+ L + HERLR +SA EIR+LRREAR+       AA    +A    A L++ +E   +   +   +H+REV  L ++L+     GR +R++++E
Sbjct:   67 HNRYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLREELSR-----------------RSLETATPARNGSKNDRAAE-AQLMAENTELRRQVEALAGQLEEALSLARRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLLRSVEDGQSQLDDLRDAHERLRLESASEIRKLRREAREGAKTVEMAARTASQAEEQVASLQDELEACERALAQARDKHRREVERLEKELEEGRVRGRAMRAKIQE 307          
BLAST of mRNA_P-wetherbeei_contig1172.1.1 vs. uniprot
Match: D7FWW4_ECTSI (Protein required for templated centriole assembly n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW4_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.190e-16
Identity = 89/253 (35.18%), Postives = 128/253 (50.59%), Query Frame = 1
Query:   97 NKRYLILTYAAEFDRIHYPLPLAHEDRPRPEALQRTIHRLRERLAAAEAGGNGHVAAAAKQAARAVSSAEAXXGANGNSGATVVARLRA---DNAQLRRQLEDALDAARRAMATXXXXXXXXXXXXXXXXXXXXXXXTTGAPPGQRKLRLQVEELQAELEQLTEQHERLRADSAREIRRLRREARDAXXXXXXAASVRRRAALLEEAVEEARQVAQRLVA----RHQREVSTLARDLDREMTAGRGLRSRLRE 834
            NKRYLILTYAAE+DR+HYPLPLA  D P+ + L+RTI RLRE L+          A  A+  ++   +AEA   A G+       R R    D A  RR  +D      R   +                       + G     R  R + EE  ++L+ L + HERLR +S  EIR+LRREAR+       AAS   +A     +++E  +V +R +A    +H+REV  L ++L++E   GR +R+++RE
Sbjct:  151 NKRYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLREELSRRSL----ETATPARNGSKNDRAAEAQLVAGGS-------RRRCRWPDGAGERRARKDFSAGGHRGGRS-----------------------SGGCDEHTRSCRREEEEA-SQLDDLRDAHERLRLESTSEIRKLRREAREGAKTVEMAASTAGQAEDQVASLQEELEVCERALAQARDKHRREVDGLDKELEKERVRGRAMRAKIRE 368          
BLAST of mRNA_P-wetherbeei_contig1172.1.1 vs. uniprot
Match: A0A0W8DCY4_PHYNI (MORN repeat-containing protein 3 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DCY4_PHYNI)

HSP 1 Score: 76.6 bits (187), Expect = 7.660e-12
Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   49 GAEPQGRGGGITVAAANKRYLILTYAAEFDRIHYPLPLAHEDRPRPEALQRTIHRLRERLAAAE 240
            GA  +G     T  +  KRYLILTYA EFDR+HYPLPL HE  P PE LQRTI RLR+ LA  E
Sbjct:  106 GAVSEGLTSAATATSTGKRYLILTYAVEFDRVHYPLPLTHEVSPSPEVLQRTIRRLRQALAEKE 169          
BLAST of mRNA_P-wetherbeei_contig1172.1.1 vs. uniprot
Match: A0A836CMQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMQ7_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 9.720e-12
Identity = 38/51 (74.51%), Postives = 40/51 (78.43%), Query Frame = 1
Query:   91 AANKRYLILTYAAEFDRIHYPLPLAHEDRPRPEALQRTIHRLRERLAAAEA 243
            A  KRYLILTYA EFDR+HYPLPLAHED    EALQR + RLRE LAAA A
Sbjct:  128 ANTKRYLILTYAVEFDRVHYPLPLAHEDGASAEALQRVVRRLREDLAAARA 178          
BLAST of mRNA_P-wetherbeei_contig1172.1.1 vs. uniprot
Match: W2PLS1_PHYPN (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PLS1_PHYPN)

HSP 1 Score: 76.6 bits (187), Expect = 1.280e-11
Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   49 GAEPQGRGGGITVAAANKRYLILTYAAEFDRIHYPLPLAHEDRPRPEALQRTIHRLRERLAAAE 240
            GA  +G     T  +  KRYLILTYA EFDR+HYPLPL HE  P PE LQRTI RLR+ LA  E
Sbjct:  128 GAVSEGLTSAATATSTGKRYLILTYAVEFDRVHYPLPLTHEVSPSPEVLQRTIRRLRQALAEKE 191          
BLAST of mRNA_P-wetherbeei_contig1172.1.1 vs. uniprot
Match: K3W5W9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5W9_GLOUD)

HSP 1 Score: 73.6 bits (179), Expect = 4.130e-11
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 1
Query:   88 AAANKRYLILTYAAEFDRIHYPLPLAHEDRPRPEALQRTIHRLRERLAA 234
            AA+NKRYLILTYA EFDR+HYPLPLA    P PE LQRTI RLR+ L A
Sbjct:  152 AASNKRYLILTYAVEFDRVHYPLPLALVQTPSPEILQRTIRRLRQELVA 200          
BLAST of mRNA_P-wetherbeei_contig1172.1.1 vs. uniprot
Match: A0A7S1XTT5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTT5_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 5.410e-11
Identity = 56/121 (46.28%), Postives = 73/121 (60.33%), Query Frame = 1
Query:   61 QGRGGGITVAAANKRYLILTYAAEFDRIHYPLPLAHEDRPRPEALQRTIHRLR-------ERLAAAEAGGNGHVAAAAKQAARAVSSAEAXXGANGNSGATVVARLRADNAQLRRQLEDAL 402
            +G  G  ++A   KRYLI+TYAAEFDR+HYPLPL  E  P P++L RTI RLR       ++LAAAEA  +   A AA+Q   A SS      A+G S      +LRA+N  LR++L  A+
Sbjct:  110 RGSPGSGSIAPNPKRYLIMTYAAEFDRVHYPLPLNFEPDPTPDSLNRTIRRLRGEADGLQKKLAAAEARASAAEATAAEQGTLA-SSVAGSDAADGLS----QTQLRAENQHLRQKLRAAI 225          
BLAST of mRNA_P-wetherbeei_contig1172.1.1 vs. uniprot
Match: A0A2P6TPY4_CHLSO (Coiled-coil domain-containing 61-like isoform X1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TPY4_CHLSO)

HSP 1 Score: 74.7 bits (182), Expect = 5.540e-11
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 1
Query:   97 NKRYLILTYAAEFDRIHYPLPLAHEDRPRPEALQRTIHRLRERLAAAEAGGNG 255
            NKRYLILTYAAEFDR+HYPLPLA E+ P P  LQ TI +LR +LAAA+A   G
Sbjct:  134 NKRYLILTYAAEFDRVHYPLPLAFEEHPDPRRLQATIRQLRTQLAAAQARSTG 186          
BLAST of mRNA_P-wetherbeei_contig1172.1.1 vs. uniprot
Match: A0A150G4X0_GONPE (VFL3 protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G4X0_GONPE)

HSP 1 Score: 73.9 bits (180), Expect = 7.440e-11
Identity = 48/105 (45.71%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   82 TVAAANKRYLILTYAAEFDRIHYPLPLAHEDRPRPEALQRTIHRLRERLAA--AEAGGNGHVAAAAKQAARAVSSAEAXXGANGNSGATVVARLRADNAQLRRQL 390
            T A  NKRYLI+TYAAEFDR+HYPLPL +E+ P P+ L+R I +LR  + A  AEAG                SS     GA G+  +  + RLR +NA LR+Q+
Sbjct:  108 TQAPNNKRYLIMTYAAEFDRVHYPLPLLYEENPDPQHLKRIISQLRSEVEALQAEAG----------------SSRRGGGGAGGSDVSVDLRRLREENAALRQQI 196          
BLAST of mRNA_P-wetherbeei_contig1172.1.1 vs. uniprot
Match: A0A7S0WPM5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WPM5_9CHLO)

HSP 1 Score: 69.7 bits (169), Expect = 1.250e-10
Identity = 33/44 (75.00%), Postives = 35/44 (79.55%), Query Frame = 1
Query:   97 NKRYLILTYAAEFDRIHYPLPLAHEDRPRPEALQRTIHRLRERL 228
            NKRYLILTYAAEFDR+HYPLPL  ED P PE L+ TI RLR  L
Sbjct:  119 NKRYLILTYAAEFDRVHYPLPLIFEDTPDPETLKATIRRLRAEL 162          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1172.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQA1_9PHAE1.290e-1742.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWW4_ECTSI1.190e-1635.18Protein required for templated centriole assembly ... [more]
A0A0W8DCY4_PHYNI7.660e-1260.94MORN repeat-containing protein 3 n=1 Tax=Phytophth... [more]
A0A836CMQ7_9STRA9.720e-1274.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W2PLS1_PHYPN1.280e-1160.94Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
K3W5W9_GLOUD4.130e-1173.47Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S1XTT5_9STRA5.410e-1146.28Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2P6TPY4_CHLSO5.540e-1169.81Coiled-coil domain-containing 61-like isoform X1 n... [more]
A0A150G4X0_GONPE7.440e-1145.71VFL3 protein n=1 Tax=Gonium pectorale TaxID=33097 ... [more]
A0A7S0WPM5_9CHLO1.250e-1075.00Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1172contigP-wetherbeei_contig1172:171..1226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FWW4
Preferred nameCCDC61
Model size1056
Max annot lvl2759|Eukaryota
KEGG koko:K16755
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0015630,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
Exons1
Evalue1.96e-17
EggNOG OGs28IZ0@1|root,2QRAS@2759|Eukaryota
Cds size1056
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185923.8375266-CDS-P-wetherbeei_contig1172:170..12261683185923.8375266-CDS-P-wetherbeei_contig1172:170..1226Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1172 171..1226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1172.1.1prot_P-wetherbeei_contig1172.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1172 171..1226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1172.1.1

>prot_P-wetherbeei_contig1172.1.1 ID=prot_P-wetherbeei_contig1172.1.1|Name=mRNA_P-wetherbeei_contig1172.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=352bp
AGHAGACPTANGITGHGAEPQGRGGGITVAAANKRYLILTYAAEFDRIHY
PLPLAHEDRPRPEALQRTIHRLRERLAAAEAGGNGHVAAAAKQAARAVSS
AEAAAGANGNSGATVVARLRADNAQLRRQLEDALDAARRAMATAAATAAA
AAAPLPPTPVPPPAATTTGAPPGQRKLRLQVEELQAELEQLTEQHERLRA
DSAREIRRLRREARDAAAAAGDAASVRRRAALLEEAVEEARQVAQRLVAR
HQREVSTLARDLDREMTAGRGLRSRLREAARKLAACESAAVAGGGSGGGG
ARRGIAGGIANRARAAVNDGGGGASSGGRGAWAAGAAAMIDSYVSRRSSA
RS
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mRNA from alignment at P-wetherbeei_contig1172:171..1226+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1172.1.1 ID=mRNA_P-wetherbeei_contig1172.1.1|Name=mRNA_P-wetherbeei_contig1172.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1056bp|location=Sequence derived from alignment at P-wetherbeei_contig1172:171..1226+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGGGCACGCCGGCGCTTGCCCCACGGCGAATGGCATCACAGGACATGG TGCGGAGCCTCAGGGCCGGGGCGGAGGGATTACCGTTGCGGCGGCAAACA AGCGATACCTCATTCTGACGTACGCTGCTGAATTCGATCGCATCCACTAC CCGCTCCCGCTCGCGCATGAGGACCGCCCGCGGCCAGAGGCACTCCAGCG GACCATCCACCGCCTCAGGGAGCGGCTGGCGGCCGCCGAAGCTGGAGGAA ACGGTCATGTTGCGGCAGCAGCAAAGCAGGCGGCAAGGGCAGTATCGTCA GCCGAAGCCGCCGCAGGGGCGAACGGAAATTCTGGCGCGACGGTGGTGGC GAGGCTGCGCGCTGACAACGCGCAGCTGCGACGGCAGCTCGAAGACGCAC TTGACGCCGCCCGGAGGGCGATGGCCACCGCCGCCGCCACGGCCGCCGCA GCCGCCGCTCCGCTGCCGCCGACACCCGTACCACCACCCGCAGCGACGAC GACGGGGGCGCCGCCGGGCCAACGCAAGCTGCGGCTGCAGGTGGAAGAGC TGCAGGCAGAGCTCGAGCAGCTGACTGAGCAGCATGAGCGCCTGCGGGCA GATTCGGCGCGGGAGATCCGGCGGCTGCGGCGGGAGGCGCGTGACGCGGC GGCAGCGGCGGGCGACGCGGCGTCGGTGCGGCGGCGAGCGGCGCTGCTGG AAGAGGCCGTGGAGGAGGCCCGGCAGGTGGCGCAGCGGCTGGTGGCGCGG CACCAGCGGGAGGTGTCCACGCTGGCCAGAGACCTCGACCGGGAGATGAC TGCCGGCCGCGGGCTGCGGAGCCGCCTGCGCGAGGCGGCGCGGAAGCTGG CAGCCTGCGAGAGCGCGGCGGTGGCCGGCGGCGGCAGCGGCGGGGGCGGT GCCCGGCGCGGCATCGCGGGCGGCATTGCGAATCGTGCTCGTGCAGCTGT TAACGACGGCGGTGGAGGCGCTTCGTCGGGGGGCAGAGGGGCATGGGCAG CGGGAGCTGCTGCAATGATAGACAGCTACGTGAGCCGGAGGAGTAGCGCG CGGTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1172:171..1226+

>mRNA_P-wetherbeei_contig1172.1.1 ID=mRNA_P-wetherbeei_contig1172.1.1|Name=mRNA_P-wetherbeei_contig1172.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1056bp|location=Sequence derived from alignment at P-wetherbeei_contig1172:171..1226+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGGGCACGCCGGCGCTTGCCCCACGGCGAATGGCATCACAGGACATGG
TGCGGAGCCTCAGGGCCGGGGCGGAGGGATTACCGTTGCGGCGGCAAACA
AGCGATACCTCATTCTGACGTACGCTGCTGAATTCGATCGCATCCACTAC
CCGCTCCCGCTCGCGCATGAGGACCGCCCGCGGCCAGAGGCACTCCAGCG
GACCATCCACCGCCTCAGGGAGCGGCTGGCGGCCGCCGAAGCTGGAGGAA
ACGGTCATGTTGCGGCAGCAGCAAAGCAGGCGGCAAGGGCAGTATCGTCA
GCCGAAGCCGCCGCAGGGGCGAACGGAAATTCTGGCGCGACGGTGGTGGC
GAGGCTGCGCGCTGACAACGCGCAGCTGCGACGGCAGCTCGAAGACGCAC
TTGACGCCGCCCGGAGGGCGATGGCCACCGCCGCCGCCACGGCCGCCGCA
GCCGCCGCTCCGCTGCCGCCGACACCCGTACCACCACCCGCAGCGACGAC
GACGGGGGCGCCGCCGGGCCAACGCAAGCTGCGGCTGCAGGTGGAAGAGC
TGCAGGCAGAGCTCGAGCAGCTGACTGAGCAGCATGAGCGCCTGCGGGCA
GATTCGGCGCGGGAGATCCGGCGGCTGCGGCGGGAGGCGCGTGACGCGGC
GGCAGCGGCGGGCGACGCGGCGTCGGTGCGGCGGCGAGCGGCGCTGCTGG
AAGAGGCCGTGGAGGAGGCCCGGCAGGTGGCGCAGCGGCTGGTGGCGCGG
CACCAGCGGGAGGTGTCCACGCTGGCCAGAGACCTCGACCGGGAGATGAC
TGCCGGCCGCGGGCTGCGGAGCCGCCTGCGCGAGGCGGCGCGGAAGCTGG
CAGCCTGCGAGAGCGCGGCGGTGGCCGGCGGCGGCAGCGGCGGGGGCGGT
GCCCGGCGCGGCATCGCGGGCGGCATTGCGAATCGTGCTCGTGCAGCTGT
TAACGACGGCGGTGGAGGCGCTTCGTCGGGGGGCAGAGGGGCATGGGCAG
CGGGAGCTGCTGCAATGATAGACAGCTACGTGAGCCGGAGGAGTAGCGCG
CGGTCG
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