mRNA_P-wetherbeei_contig11711.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11711.1.1
Unique NamemRNA_P-wetherbeei_contig11711.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11711.1.1 vs. uniprot
Match: A0A6H5KGL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL2_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 9.420e-12
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:  133 GETLAARILFVSNGLCGHVEPLLRLAEEVASRGYDVTFATHDVAAPLVEMTPRVRFLSAGAMPQTPKALQETVRAI 360
            G  +  RILFVS G  GH  PLL LAEE+A+RG++VTFATH+   P+V+ TP V FLSAG MP     L+  +R++
Sbjct:   59 GRPVPGRILFVSVGFYGHAMPLLSLAEEIAARGHNVTFATHNCLRPMVDETPGVAFLSAGRMPMHDHHLRSKLRSL 134
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BLAST of mRNA_P-wetherbeei_contig11711.1.1 vs. uniprot
Match: A0A067C9X2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C9X2_SAPPC)

HSP 1 Score: 61.2 bits (147), Expect = 1.840e-6
Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:  154 ILFVSNGLCGHVEPLLRLAEEVASRGYDVTFATHDVAAPLVEMTPRVRFLSAGAMPQTPKALQETVRAI 360
            +LF+S  + GH  PLLR+A+E+  RGY+V+FATHD     V+ T    F+SAG  P +  AL+E ++AI
Sbjct:   52 VLFISLAIRGHATPLLRVADEMVRRGYNVSFATHDSGKEWVQRT-GATFISAGPFPISADALREKLQAI 119
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BLAST of mRNA_P-wetherbeei_contig11711.1.1 vs. uniprot
Match: A0A1V9YXK0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YXK0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.330e-6
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:  154 ILFVSNGLCGHVEPLLRLAEEVASRGYDVTFATHDVAAPLVEMTPRVRFLSAGAMPQTPKALQETVRAI 360
            ++F+S  + GH  PLLR+AEE+  RGY+V+FATHD     V+ T    F+SAGA P +  AL+  +++I
Sbjct:   47 VMFISLAIRGHATPLLRIAEEMVQRGYNVSFATHDSGKEWVQRT-GAHFVSAGAFPISADALRIKLQSI 114
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BLAST of mRNA_P-wetherbeei_contig11711.1.1 vs. uniprot
Match: A0A1V9ZKP0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKP0_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 9.370e-5
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:  154 ILFVSNGLCGHVEPLLRLAEEVASRGYDVTFATHDVAAPLVEMTPRVRFLSAGAMPQTPKALQETVRAI 360
            +LF+S  + GH  PLLR+A+E+  RGY+V+FATH+     V  T    F+SAG  P +   L+E +++I
Sbjct:   48 VLFISLAIRGHATPLLRVADEMVRRGYNVSFATHESGKEWVART-GAHFVSAGEFPISADGLREKLQSI 115
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11711.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KGL2_9PHAE9.420e-1252.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A067C9X2_SAPPC1.840e-646.38Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9YXK0_9STRA4.330e-644.93Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1V9ZKP0_9STRA9.370e-542.03Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11711contigP-wetherbeei_contig11711:397..1634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog112098.XP_008608037.1
PFAMsUDPGT
Model size1240
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00033,RC00049,RC00059,RC00078,RC00171,RC00397,RC00523,RC00529,RC00708,RC02748
KEGG koko:K00699
KEGG ReactionR01383,R02358,R02389,R02478,R02502,R02902,R03091,R04352,R04353,R04354,R04683,R07106,R08259,R08261,R08262,R08263,R08615,R09426,R09427,R09428
KEGG Pathwayko00040,ko00053,ko00140,ko00830,ko00860,ko00980,ko00982,ko00983,ko01100,ko01110,ko05204,map00040,map00053,map00140,map00830,map00860,map00980,map00982,map00983,map01100,map01110,map05204
KEGG ModuleM00014,M00129
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.4e-08
EggNOG OGsKOG1192@1|root,KOG1192@2759|Eukaryota
EC2.4.1.17
Descriptiontransferase activity, transferring hexosyl groups
Cds size366
COG categoryG
CAZyGT1
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185923.5298483-UTR-P-wetherbeei_contig11711:396..12681683185923.5298483-UTR-P-wetherbeei_contig11711:396..1268Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11711 397..1268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185923.5415037-CDS-P-wetherbeei_contig11711:1268..16341683185923.5415037-CDS-P-wetherbeei_contig11711:1268..1634Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11711 1269..1634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11711.1.1prot_P-wetherbeei_contig11711.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11711 1269..1634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11711.1.1

>prot_P-wetherbeei_contig11711.1.1 ID=prot_P-wetherbeei_contig11711.1.1|Name=mRNA_P-wetherbeei_contig11711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
SASTLEASEPWLRSTASPAGPNGRCPRPPDSNAAGGAASDGAGAGETLAA
RILFVSNGLCGHVEPLLRLAEEVASRGYDVTFATHDVAAPLVEMTPRVRF
LSAGAMPQTPKALQETVRAIG*
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mRNA from alignment at P-wetherbeei_contig11711:397..1634-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11711.1.1 ID=mRNA_P-wetherbeei_contig11711.1.1|Name=mRNA_P-wetherbeei_contig11711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1238bp|location=Sequence derived from alignment at P-wetherbeei_contig11711:397..1634- (Phaeothamnion wetherbeei SAG_119_79)
TCGGCGAGCACCCTGGAGGCCTCTGAACCCTGGCTCCGCAGCACTGCGTC
TCCCGCCGGGCCCAATGGGCGTTGTCCAAGGCCTCCAGACTCCAATGCTG
CGGGCGGAGCCGCAAGCGATGGCGCTGGGGCCGGAGAAACACTGGCCGCC
CGGATCCTCTTCGTTTCGAACGGCCTGTGCGGGCACGTCGAACCGCTATT
GCGTCTCGCGGAGGAAGTGGCGAGCCGTGGTTATGACGTCACCTTCGCGA
CGCACGATGTGGCGGCGCCGCTCGTGGAGATGACACCCAGAGTCCGATTC
TTGTCCGCAGGCGCCATGCCGCAGACGCCAAAAGCTTTGCAAGAAACGGT
GAGAGCAATAGGATGAAAGCTGCTGCCCCTCGCTTCTTCCCGCCCGCTAC
TTGTTTTAATTCTTTGGTATGGTTTTGGACTTCCAAAAGCTTCGGTGATG
TCTGGTCTCAGCTTGGTCACACTTCTTCATGGTGGCCCCAGCCTCGTGCT
TTCTGTTCTGATGCCTTCTGTACGCGCCGCAAGTCTAGACTGGGGAAACT
TGGGCCATGGGGTGGAAGGAACTGGGCGGAGGCAATTCACAAGTCAATCT
GTGGCTTGTTTTGGAGATGAGGTGAACGTTATAGCGCCGAGTTGAACTTT
AAGGAGTAAGCGTGAGAAATGACCGATCGCGGTCGTGCTTATAAAACCAT
GTGAATCTGATTTCGATTTTCTGACTTACTAGAATAATGATCAATGGCAG
CTGCGTGCCTGAAATGAACCATTGAGAAACTCCTCGAAAACTTTCAGATG
TCGAAGAAGCTGCACAAACCTTGATTTACGTGCTGCTGCTCGCTGTCATG
CTGTTCTACTTTAATACTTCCTTTCTTTTCACCTCCTCTGTATGCGGCCG
CCGCCCCTTCCTTGCCTGGCTCGCCGTTTACCTCGCTTCGCTTCCATAGT
ACCGGCGGCTGAGCCGCGAGTCGTCGGGGCTCGGCGGCATGCTGACGGTC
TTTGGGGAGGTTTACCTTCCCATGGTGCGGCCGCTCTACCATGCCCTTTA
TGACGCCCTCGTCCCCCCCACGGCCGCTGTCGCCCCCACTGCCGCCGCTA
ACAACAACGGAACTGCTGCGGCAACGGCGATGGCCGACGAAACGGCCGTA
GCGGAAGACGCGGCGGTGGTGACGGCGGAGGGAGTATCGGCGACCTCTAC
TGTGCCTGCTTCCGGTTCTGCTTCGGCTTCGGCTTCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11711:397..1634-

>mRNA_P-wetherbeei_contig11711.1.1 ID=mRNA_P-wetherbeei_contig11711.1.1|Name=mRNA_P-wetherbeei_contig11711.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig11711:397..1634- (Phaeothamnion wetherbeei SAG_119_79)
TCGGCGAGCACCCTGGAGGCCTCTGAACCCTGGCTCCGCAGCACTGCGTC
TCCCGCCGGGCCCAATGGGCGTTGTCCAAGGCCTCCAGACTCCAATGCTG
CGGGCGGAGCCGCAAGCGATGGCGCTGGGGCCGGAGAAACACTGGCCGCC
CGGATCCTCTTCGTTTCGAACGGCCTGTGCGGGCACGTCGAACCGCTATT
GCGTCTCGCGGAGGAAGTGGCGAGCCGTGGTTATGACGTCACCTTCGCGA
CGCACGATGTGGCGGCGCCGCTCGTGGAGATGACACCCAGAGTCCGATTC
TTGTCCGCAGGCGCCATGCCGCAGACGCCAAAAGCTTTGCAAGAAACGGT
GAGAGCAATAGGATGA
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