mRNA_P-wetherbeei_contig117.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig117.7.1
Unique NamemRNA_P-wetherbeei_contig117.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig117.7.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 9.910e-39
Identity = 78/150 (52.00%), Postives = 102/150 (68.00%), Query Frame = 1
Query:   43 SPSFPVEAFESMLNVTTEPGLTLVGEALG-TASSQQALAKLRAAGDEYLMTPRLEGGAIGISLPRRPDLVLTGVRVLVGAASMDHVPRELRIMGRVRRTAEGQKRWYDLPLTAAEVGRAAAGAPVVLSISSSYEGGNHPLLDAIEVYAQP 489
            +P FP+E FES+ NVT +P L   G A+      QQ  +KL     EYL+TPR EGG+IG+ L   P L +  VRV +G AS+DH+PRELRIMGR  +T +G+ +WYDLPLT  E+ R  A  PVV+S+SS  +  NHPL+DA+EVYA+P
Sbjct: 3418 APRFPIEIFESLENVTADPRLCYCGHAIDPNHGDQQVRSKLSRETPEYLITPRAEGGSIGLWLRGCPGLRIAAVRVQLGHASVDHIPRELRIMGRTIQTQKGKAKWYDLPLTEQEIERGNAVGPVVVSVSSCADASNHPLIDALEVYARP 3567          
BLAST of mRNA_P-wetherbeei_contig117.7.1 vs. uniprot
Match: D8LLX0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX0_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 2.500e-38
Identity = 78/152 (51.32%), Postives = 103/152 (67.76%), Query Frame = 1
Query:   37 EESPSFPVEAFESMLNVTTEPGLTLVGEALG-TASSQQALAKLRAAGDEYLMTPRLEGGAIGISLPRRPDLVLTGVRVLVGAASMDHVPRELRIMGRVRRTAEGQKRWYDLPLTAAEVGRAAAGAPVVLSISSSYEGGNHPLLDAIEVYAQP 489
            E +P FP+E FES+ NVT +P L   G A+      +Q  +KL     EYL+TPR EGG+IG+ L   P L +  VRV +G AS+DH+PRELRIMGR  +T +G+ +WYDLPLT  E+ R  A  PVV+S+SS  +  NHPL+DA+EVYA+P
Sbjct: 3228 EGAPRFPIEIFESLENVTADPRLCYCGHAIDPNHGDRQVRSKLSRETPEYLITPRAEGGSIGLWLRGCPGLRIAAVRVQLGHASVDHIPRELRIMGRTIQTQKGKAKWYDLPLTEQEIERGNAVGPVVVSVSSCADASNHPLIDALEVYARP 3379          
BLAST of mRNA_P-wetherbeei_contig117.7.1 vs. uniprot
Match: D3B758_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B758_POLPP)

HSP 1 Score: 94.7 bits (234), Expect = 1.640e-19
Identity = 56/148 (37.84%), Postives = 89/148 (60.14%), Query Frame = 1
Query:   40 ESPSFPVEAFESMLNVTTEPGLTLVGEALGTASSQQALAKLRAAGDEYLMTPRLEGGAIGISLPRRPDLVLTGVRVLVGAASMDHVPRELRIMGRVRRTAEGQKRWYDLPLTAAEVGRAAAGAPVVLSISSSYEGGNHPLLDAIEVYA 483
            E+P FP++ FE +  +T  P +   G+ L    SQ  + +  A  DEY+    L+  ++ I+    PD+V+ G+RVL+G AS+ H+P ELR+  RV  T E  +RWYD+PLT  E  +++    + L  SS+Y  GN P++D++E+YA
Sbjct: 2425 ENPVFPIDFFEKVECIT--PQVKFGGDPL-MCYSQDLIKQRLANNDEYIACQNLDSLSL-IAYNNDPDVVICGIRVLLGHASLKHIPTELRVFDRVITTTESLRRWYDIPLTKEESLKSSK--KLTLIASSAYNLGNAPIIDSVEIYA 2566          
BLAST of mRNA_P-wetherbeei_contig117.7.1 vs. uniprot
Match: A0A0M0JXM7_9EUKA (E3 ubiquitin-protein ligase ubr4 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JXM7_9EUKA)

HSP 1 Score: 94.0 bits (232), Expect = 3.000e-19
Identity = 54/146 (36.99%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   49 SFPVEAFESMLNVTTEPGLTLVGEALGTASSQQALAKLRAAGDEYLMTPRLEGGAIGISLPRRPDLVLTGVRVLVGAASMDHVPRELRIMGRVRRTAEGQKRWYDLPLTAAEVGRAAAGAPVVLSISSSYEGGNHPLLDAIEVYAQ 486
            SFPV+ FE    VT    +   G+ L  +S+  A A+L +  ++Y+ +P      + ++     + VL GVRVL+G+A   H+P    + GR   T EGQ+RWYD+PLT AE    A    + L  S+++ G N P++DA++VYAQ
Sbjct:  330 SFPVDFFERGTCVTASSDIAFGGDVLHNSSATNAKARLSSNTEDYVSSPHKTALTLHVN-NSNAEQVLVGVRVLLGSAHPQHIPASFSLFGRTIATHEGQRRWYDVPLTEAEA--IAGHRQLTLVFSATHSGINVPVIDAVDVYAQ 472          
BLAST of mRNA_P-wetherbeei_contig117.7.1 vs. uniprot
Match: A0A0M0JCY2_9EUKA (E3 ubiquitin-protein ligase ubr4 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JCY2_9EUKA)

HSP 1 Score: 90.1 bits (222), Expect = 1.070e-18
Identity = 52/146 (35.62%), Postives = 82/146 (56.16%), Query Frame = 1
Query:   49 SFPVEAFESMLNVTTEPGLTLVGEALGTASSQQALAKLRAAGDEYLMTPRLEGGAIGISLPRRPDLVLTGVRVLVGAASMDHVPRELRIMGRVRRTAEGQKRWYDLPLTAAEVGRAAAGAPVVLSISSSYEGGNHPLLDAIEVYAQ 486
            SFPV+ FE    VT    +   G+ L  +S+  A A+L +  ++Y+ +P +    + +      + VL G+RVL+G+A    +P    + GR   T EGQ+RWYD+PLT AE    A    + L  S+++ G N P++DA++VYAQ
Sbjct:    6 SFPVDFFERGTCVTASSDIAFGGDVLHNSSATNAKARLLSNTEDYVSSPNMTALTLHVH-NSNAEQVLVGIRVLLGSAHPHDIPASFSLFGRTIATHEGQRRWYDVPLTEAEA--IAGHRQLTLVFSATHSGINVPVIDAVDVYAQ 148          
BLAST of mRNA_P-wetherbeei_contig117.7.1 vs. uniprot
Match: UPI0006448367 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006448367)

HSP 1 Score: 90.9 bits (224), Expect = 3.610e-18
Identity = 56/145 (38.62%), Postives = 85/145 (58.62%), Query Frame = 1
Query:   46 PSFPVEAFESMLNVTTEPGLTLVGEALGTASSQQALAKLRAAGDEYLMTPRLEGGAIGISLPRRPDLVLTGVRVLVGAASMDHVPRELRIMGRVRRTAEGQKRWYDLPLTAAEVGRAAAGAPVVLSISSSYEGGNHPLLDAIEVY 480
            P FP++ FE +  +T  P     G+ L   S ++   KL AAG EY+    L+   I + L   PD+V+ GVRVLVG AS  H+P  L++  RV    EG KRWYD+PLT AE  +++    + L+ ++++   N P++D++EVY
Sbjct: 2435 PVFPIDFFERVECIT--PSTKYGGDPLQAYSKEEIKRKLEAAG-EYIAGQNLDSLNI-VLLNEDPDIVICGVRVLVGEASTKHIPTSLKVHNRVISCTEGMKRWYDIPLTQAESLKSSK--KLTLTATATFNMTNPPIIDSLEVY 2573          
BLAST of mRNA_P-wetherbeei_contig117.7.1 vs. uniprot
Match: A0A151Z5M1_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z5M1_9MYCE)

HSP 1 Score: 86.3 bits (212), Expect = 1.470e-16
Identity = 53/148 (35.81%), Postives = 84/148 (56.76%), Query Frame = 1
Query:   46 PSFPVEAFESMLNVTTEPGLTLVGEALGTASSQQALAKLRAAGDEYLMTPRLEGGAIGISLPRRPDLVLTGVRVLVGAASMDHVPRELRIMGRVRRTAEGQKRWYDLPLTAAEVGRAAAGAPVVLSISSSYEGGNHPLLDAIEVYAQP 489
            P FP++ FE    +TT   +   G+ L + + +    KL A+ D+Y++   L+  ++ I      + V+ G+RVL+G AS+ HVP E+R+  RV    EG +RWYD+PLT  E  ++     +V    S+Y  GN P++D +EVYA P
Sbjct: 2445 PQFPIDFFERTECITTN--VKYGGDPLNSYTQEIIKQKL-ASNDDYIVGQNLDSLSL-IIYNNDNEKVMCGIRVLLGNASLKHVPTEIRVFSRVIPVTEGIRRWYDIPLTIEETAKSQKKLSIVAG--STYTMGNGPIIDQVEVYAIP 2586          
BLAST of mRNA_P-wetherbeei_contig117.7.1 vs. uniprot
Match: A0A8J4Q0K9_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q0K9_9MYCE)

HSP 1 Score: 85.5 bits (210), Expect = 2.730e-16
Identity = 55/147 (37.41%), Postives = 80/147 (54.42%), Query Frame = 1
Query:   46 PSFPVEAFESMLNVTTEPGLTLVGEALGTASSQQALAKLRAAGDEYLMTPRLEGGAIGISLPRRPDLVLTGVRVLVGAASMDHVPRELRIMGRVRRTAEGQKRWYDLPLTAAEVGRAAAGAPVVLSISSSYEGGNHPLLDAIEVYAQ 486
            P FP++ FE++  +T  P +   G+ L    SQ  + +  +  DEY++   LE   + I        V+ G+RVLVG AS+ H+P E RI  RV    EG KRWYD+PLT  E  +++    V L    S+  GN P++D IEVY +
Sbjct: 2500 PVFPIDFFENVECIT--PSVKYGGDPL-QYYSQDVIKQRLSFNDEYVVCQSLESMNLIIYNSNNSSNVICGIRVLVGNASVKHIPTEFRIYNRVIPVKEGMKRWYDIPLTNEEALKSSK--KVTLVAGPSFTLGNSPIIDQIEVYGK 2641          
BLAST of mRNA_P-wetherbeei_contig117.7.1 vs. uniprot
Match: F0Y2R4_AURAN (UBR-type domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2R4_AURAN)

HSP 1 Score: 79.3 bits (194), Expect = 3.820e-14
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1
Query:  157 KLRAAGDEYLMTPRLEGGAIGISLPRRPDLVLTGVRVLVGAASMDHVPRELRIMGRVRRTAEGQKRWYDLPLTAAEVGRAAAGAPVVLSISSSYEGGNHPLLDAIEVY 480
            KLR   DEYL+  R EGG       R  D+ +  VRVL+GAAS +HVPR L + GR    ++  +RWYD+ L+  +    AA   V LS+  S   GN PLLDA+E+Y
Sbjct: 2878 KLRPGNDEYLVASRAEGGTFVARSERPGDVEV--VRVLLGAASPEHVPRTLVVCGRRLDVSKDDRRWYDVALSDGDRRVCAALGGVALSLLGSNTAGNPPLLDALELY 2983          
BLAST of mRNA_P-wetherbeei_contig117.7.1 vs. uniprot
Match: A0A8J5XLD8_DIALT (UBR-type domain-containing protein n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XLD8_DIALT)

HSP 1 Score: 67.4 bits (163), Expect = 5.350e-10
Identity = 45/123 (36.59%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  127 GTASSQQALAKLRAAGDEYLMTPRLEGGAIGISLPRRPDLVLTGVRVLVGAASMDHVPRELRIMGRVRRT--AEGQKRWYDLPLTAAEVGRAAAGAPVVLSISSSYEGGNHPLLDAIEVYAQP 489
            G  +++   A+L +A DE L++ R +G ++ ++    P L + GVRVLVG A    VPR L +    R    A+G  RW++  L A E+  A A   +VL    ++  G  P +DAIEVYA+P
Sbjct: 3482 GALTAESLKARLSSASDEPLVSHRRDGLSVSVT-NANPALAICGVRVLVGQALPQSVPRTLSLFSGRRSLPLADGVNRWHEASLDAEEM--AVAHRTLVLDFGPAHARGKPPAIDAIEVYARP 3601          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig117.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J981_9PHAE9.910e-3952.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLX0_ECTSI2.500e-3851.32Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D3B758_POLPP1.640e-1937.84Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
A0A0M0JXM7_9EUKA3.000e-1936.99E3 ubiquitin-protein ligase ubr4 n=1 Tax=Chrysochr... [more]
A0A0M0JCY2_9EUKA1.070e-1835.62E3 ubiquitin-protein ligase ubr4 n=1 Tax=Chrysochr... [more]
UPI00064483673.610e-1838.62hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A151Z5M1_9MYCE1.470e-1635.81Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
A0A8J4Q0K9_9MYCE2.730e-1637.41Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
F0Y2R4_AURAN3.820e-1444.44UBR-type domain-containing protein n=1 Tax=Aureoco... [more]
A0A8J5XLD8_DIALT5.350e-1036.59UBR-type domain-containing protein n=3 Tax=Diacron... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig117contigP-wetherbeei_contig117:9169..9657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LLX0
PFAMsE3_UbLigase_R4,ZZ
Model size491
Max annot lvl2759|Eukaryota
KEGG koko:K10691
KEGG Pathwayko05165,ko05203,map05165,map05203
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.1e-39
EggNOG OGsKOG1776@1|root,KOG1776@2759|Eukaryota
EC2.3.2.27
Descriptionperineurial glial growth
Cds size489
COG categoryS
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185922.9831016-CDS-P-wetherbeei_contig117:9168..96571683185922.9831016-CDS-P-wetherbeei_contig117:9168..9657Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig117 9169..9657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig117.7.1prot_P-wetherbeei_contig117.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig117 9169..9657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig117.7.1

>prot_P-wetherbeei_contig117.7.1 ID=prot_P-wetherbeei_contig117.7.1|Name=mRNA_P-wetherbeei_contig117.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
AADAAAVVADGREESPSFPVEAFESMLNVTTEPGLTLVGEALGTASSQQA
LAKLRAAGDEYLMTPRLEGGAIGISLPRRPDLVLTGVRVLVGAASMDHVP
RELRIMGRVRRTAEGQKRWYDLPLTAAEVGRAAAGAPVVLSISSSYEGGN
HPLLDAIEVYAQP
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mRNA from alignment at P-wetherbeei_contig117:9169..9657+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig117.7.1 ID=mRNA_P-wetherbeei_contig117.7.1|Name=mRNA_P-wetherbeei_contig117.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig117:9169..9657+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGATGCGGCGGCGGTGGTGGCGGATGGGAGAGAGGAGTCGCCGTC ATTCCCCGTCGAGGCGTTCGAGTCTATGCTGAACGTGACAACGGAGCCCG GGTTGACGCTTGTCGGTGAGGCGCTGGGCACGGCGTCGTCGCAGCAGGCG CTGGCCAAGCTGCGGGCGGCGGGAGACGAGTACCTCATGACGCCGCGGCT GGAGGGCGGCGCCATTGGCATCTCTCTCCCTCGGCGGCCTGATCTGGTCC TGACCGGCGTGCGCGTGCTGGTCGGTGCCGCGTCCATGGACCACGTCCCG CGGGAGCTGCGCATCATGGGGCGCGTGCGGCGCACCGCCGAGGGGCAAAA GCGCTGGTATGACCTGCCGCTGACGGCCGCAGAAGTGGGGCGGGCCGCCG CTGGCGCGCCCGTTGTACTGAGCATCTCGAGCAGCTACGAGGGCGGTAAT CATCCGTTGCTCGACGCCATCGAGGTGTACGCGCAGCCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig117:9169..9657+

>mRNA_P-wetherbeei_contig117.7.1 ID=mRNA_P-wetherbeei_contig117.7.1|Name=mRNA_P-wetherbeei_contig117.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig117:9169..9657+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGATGCGGCGGCGGTGGTGGCGGATGGGAGAGAGGAGTCGCCGTC
ATTCCCCGTCGAGGCGTTCGAGTCTATGCTGAACGTGACAACGGAGCCCG
GGTTGACGCTTGTCGGTGAGGCGCTGGGCACGGCGTCGTCGCAGCAGGCG
CTGGCCAAGCTGCGGGCGGCGGGAGACGAGTACCTCATGACGCCGCGGCT
GGAGGGCGGCGCCATTGGCATCTCTCTCCCTCGGCGGCCTGATCTGGTCC
TGACCGGCGTGCGCGTGCTGGTCGGTGCCGCGTCCATGGACCACGTCCCG
CGGGAGCTGCGCATCATGGGGCGCGTGCGGCGCACCGCCGAGGGGCAAAA
GCGCTGGTATGACCTGCCGCTGACGGCCGCAGAAGTGGGGCGGGCCGCCG
CTGGCGCGCCCGTTGTACTGAGCATCTCGAGCAGCTACGAGGGCGGTAAT
CATCCGTTGCTCGACGCCATCGAGGTGTACGCGCAGCCT
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