mRNA_P-wetherbeei_contig11696.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11696.1.1
Unique NamemRNA_P-wetherbeei_contig11696.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11696.1.1 vs. uniprot
Match: D7FSD5_ECTSI (Mitochondrial import receptor, Tom70 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSD5_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 7.320e-22
Identity = 49/117 (41.88%), Postives = 81/117 (69.23%), Query Frame = 1 
Query:   73 EGLERRLAKLLGRAKRLHKARNFEAAAAQYTRAMDVLERMPPNPSLQTSLYNNRAAMHEKAGRLPSALSDCSVCLSFDPGHRLARVRKSRIFAALARYEDALAELCALMLGEREKVR 423
            E L  R  +   +AK+L   + +  AA QY  A+++ + +P + + +T+L+NNR A +EK G+   AL+DCS+CLS + GH+ ARVRKSR+  A+ ++E+AL+E+CA +L ER++V+
Sbjct:  166 EALIVRFNRANSKAKKLFTGQRYALAAEQYGIALELCDELPNHDNKRTALHNNRGAAYEKDGQYALALADCSMCLSREVGHKFARVRKSRVLEAMGKHEEALSEVCAHLLLERDRVQ 282
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BLAST of mRNA_P-wetherbeei_contig11696.1.1 vs. uniprot
Match: A0A7S2WS90_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WS90_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 4.490e-14
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 1 
Query:  127 KARNFEAAAAQYTRAMDVLERMPPNPSLQTSLYNNRAAMHEKAGRLPSALSDCSVCLSFDPGHRLARVRKSRIFAALARYEDALAELCALMLGEREKVRFIMLQL---PPQ 450
            K + ++ A   ++RA+++ E++        +LYNNR+A+ EK GR   +L+DC   L+ +PGH   R R++RI+ A    +DAL ELCA++L ERE  R  + Q    PPQ
Sbjct:  160 KGQKYKQAHELFSRAIEIGEQLNLEQGKLETLYNNRSAVLEKLGRPMESLADCITVLAMNPGHSKVRKRRARIYMAQENPKDALVELCAVLLAERETARKQLEQYKDSPPQ 270
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BLAST of mRNA_P-wetherbeei_contig11696.1.1 vs. uniprot
Match: A0A7S3K1R0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1R0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 9.630e-11
Identity = 36/92 (39.13%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:  139 FEAAAAQYTRAMDVLERMPPNPSLQTSLYNNRAAMHEKAGRLPSALSDCSVCLSFDPGHRLARVRKSRIFAALARYEDALAELCALMLGERE 414
            +E AA  +++A+ + E        + +LYNNR+A  E+ G L  +L DC+V L+ +  H   R R++RIF  L R+ DAL E+CA +L +RE
Sbjct:   14 YEEAADWFSKAITIAEAHESLVPQRIALYNNRSACRERFGALELSLEDCAVVLAANKTHAKVRRRRARIFEKLGRHADALVEICADLLIQRE 105
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BLAST of mRNA_P-wetherbeei_contig11696.1.1 vs. uniprot
Match: A0A8J2SF76_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SF76_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.340e-10
Identity = 36/92 (39.13%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:  139 FEAAAAQYTRAMDVLERMPPNPSLQTSLYNNRAAMHEKAGRLPSALSDCSVCLSFDPGHRLARVRKSRIFAALARYEDALAELCALMLGERE 414
            +  AA  +++A+D+          + +LYNNR+A  E+   L ++L DC+V L+ DP H   R R++RIF  L R E+AL E+CA +L +RE
Sbjct:   82 YAEAAEWFSKAIDLSIAHETLAPQRKALYNNRSACRERCDDLEASLEDCAVVLASDPQHAKVRRRRARIFDKLGRNEEALVEICADLLIQRE 173
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BLAST of mRNA_P-wetherbeei_contig11696.1.1 vs. uniprot
Match: A0A2P6NFV9_9EUKA (DnaJ subfamily C protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NFV9_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 6.180e-8
Identity = 44/125 (35.20%), Postives = 61/125 (48.80%), Query Frame = 1 
Query:   25 PPSSIGGEDDDADQTPEGLERRLAKLLGRAKRLHKARNFEAAAA-----QYTRAMDVLERMPPNPSLQTSLYNNRAAMHEKAGRLPSALSDCSVCLSFDPGHRLARVRKSRIFAALARYEDALAE 384
            PPS+I    +     P+ +E R A     A    K    +A +A      YT   + LE  P N +L ++LYNNRAA   K  R   A+ DC   + FD  +  A VR++  F AL R+EDA+ E
Sbjct:  205 PPSAIKHFKNILQLDPDNVEARSALKRANAYEARKKDGNDAFSAGKYEEAYTIYTECLEIDPKNKTLNSTLYNNRAAALMKLKRFEEAVKDCDKAIDFDENNVKALVRRAGCFTALERHEDAVRE 329
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11696.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FSD5_ECTSI7.320e-2241.88Mitochondrial import receptor, Tom70 homolog n=2 T... [more]
A0A7S2WS90_9STRA4.490e-1438.74Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3K1R0_9STRA9.630e-1139.13Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J2SF76_9STRA1.340e-1039.13Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2P6NFV9_9EUKA6.180e-835.20DnaJ subfamily C protein n=1 Tax=Planoprotostelium... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11696contigP-wetherbeei_contig11696:524..1280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FSD5
Preferred nameTOMM70A
PFAMsTPR_1,TPR_16,TPR_17,TPR_2,TPR_8
Model size459
Max annot lvl2759|Eukaryota
KEGG koko:K00738,ko:K17768
KEGG TC3.A.8.1
KEGG ReactionR05987
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00075
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0001558,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005742,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010611,GO:0010614,GO:0010721,GO:0014070,GO:0014741,GO:0014743,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016202,GO:0017038,GO:0019867,GO:0022804,GO:0022857,GO:0022884,GO:0030150,GO:0030308,GO:0030943,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0040008,GO:0042221,GO:0042277,GO:0042493,GO:0042886,GO:0042887,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043502,GO:0044057,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0045595,GO:0045596,GO:0045843,GO:0045926,GO:0046620,GO:0046621,GO:0046907,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048634,GO:0048635,GO:0048638,GO:0048640,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051093,GO:0051128,GO:0051147,GO:0051148,GO:0051153,GO:0051154,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051241,GO:0051641,GO:0051649,GO:0055021,GO:0055022,GO:0055024,GO:0055026,GO:0055085,GO:0060284,GO:0060420,GO:0061024,GO:0061050,GO:0061052,GO:0061117,GO:0065002,GO:0065007,GO:0070201,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0090087,GO:0090150,GO:0090151,GO:0090257,GO:0097066,GO:0097068,GO:0098573,GO:0098588,GO:0098796,GO:0098798,GO:0098799,GO:0098805,GO:1901698,GO:1901700,GO:1901861,GO:1901862,GO:1904386,GO:1904589,GO:1904591,GO:1904680,GO:1904951,GO:1905207,GO:1905208,GO:1990542,GO:2000026,GO:2000725,GO:2000726
Exons2
Evalue1.2e-22
EggNOG OGsKOG0547@1|root,KOG0547@2759|Eukaryota
Ec32 ortholog descriptionSimilar to mitochondrial import receptor Tom70
Ec32 orthologEc-25_001030.1
EC2.4.1.145
Descriptionprotein transmembrane transport
Cds size459
COG categoryS
CAZyGT54
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko02000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185922.727811-CDS-P-wetherbeei_contig11696:523..7781683185922.727811-CDS-P-wetherbeei_contig11696:523..778Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11696 524..778 -
1683185922.7392821-CDS-P-wetherbeei_contig11696:1076..12801683185922.7392821-CDS-P-wetherbeei_contig11696:1076..1280Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11696 1077..1280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11696.1.1prot_P-wetherbeei_contig11696.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11696 524..1280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11696.1.1

>prot_P-wetherbeei_contig11696.1.1 ID=prot_P-wetherbeei_contig11696.1.1|Name=mRNA_P-wetherbeei_contig11696.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
SDDETASVPPSSIGGEDDDADQTPEGLERRLAKLLGRAKRLHKARNFEAA
AAQYTRAMDVLERMPPNPSLQTSLYNNRAAMHEKAGRLPSALSDCSVCLS
FDPGHRLARVRKSRIFAALARYEDALAELCALMLGEREKVRFIMLQLPPQ
AV*
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mRNA from alignment at P-wetherbeei_contig11696:524..1280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11696.1.1 ID=mRNA_P-wetherbeei_contig11696.1.1|Name=mRNA_P-wetherbeei_contig11696.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=757bp|location=Sequence derived from alignment at P-wetherbeei_contig11696:524..1280- (Phaeothamnion wetherbeei SAG_119_79)
AGCGACGACGAGACGGCGTCGGTGCCGCCGAGCAGCATCGGCGGTGAGGA
CGACGACGCCGACCAGACGCCGGAAGGGCTGGAGCGACGGCTGGCCAAGC
TGCTCGGGCGGGCGAAACGCCTCCACAAGGCACGCAACTTCGAGGCGGCG
GCGGCGCAGTACACGCGGGCCATGGACGTGCTCGAGCGGATGCCGCCCAA
TCCCGTGAGTTGTTGATCAGATAGATCTGGAGAAGTGCTTTTCAGTCATT
CTACTCTCCCTCTTTCCGGTTGAGGCCGCTGGATGGTCAAAGATCGCCTC
CTCTCCATGTGTCGTCTGCATTTCGTGCGCCCTGTCACGCCTGAGATTTT
AGCTGTTGCTGCAGCTGCTTTTTGCTTTTTTTGCAGTCCTTCCATGCCTC
AAACCCCGCTTGCATCGTTCGTTTCTGGTTGCCATCTTTCTCGCCGCGGA
CGAACCGAAACGGACGGACGTAACGGACGGAAACGGACCGAGCGCCCGGT
AGTCTCTGCAAACGTCCCTCTACAACAACCGCGCGGCGATGCACGAGAAG
GCTGGCCGGCTACCATCGGCGCTGTCGGACTGCTCTGTCTGCCTATCGTT
CGACCCGGGCCACCGCCTCGCCCGCGTCCGCAAGTCGCGCATTTTCGCGG
CGCTGGCGCGCTACGAAGACGCGCTGGCGGAGCTCTGCGCCCTCATGCTC
GGGGAGCGTGAGAAGGTGCGGTTCATTATGTTACAGCTTCCCCCCCAGGC
GGTTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11696:524..1280-

>mRNA_P-wetherbeei_contig11696.1.1 ID=mRNA_P-wetherbeei_contig11696.1.1|Name=mRNA_P-wetherbeei_contig11696.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig11696:524..1280- (Phaeothamnion wetherbeei SAG_119_79)
AGCGACGACGAGACGGCGTCGGTGCCGCCGAGCAGCATCGGCGGTGAGGA
CGACGACGCCGACCAGACGCCGGAAGGGCTGGAGCGACGGCTGGCCAAGC
TGCTCGGGCGGGCGAAACGCCTCCACAAGGCACGCAACTTCGAGGCGGCG
GCGGCGCAGTACACGCGGGCCATGGACGTGCTCGAGCGGATGCCGCCCAA
TCCCTCTCTGCAAACGTCCCTCTACAACAACCGCGCGGCGATGCACGAGA
AGGCTGGCCGGCTACCATCGGCGCTGTCGGACTGCTCTGTCTGCCTATCG
TTCGACCCGGGCCACCGCCTCGCCCGCGTCCGCAAGTCGCGCATTTTCGC
GGCGCTGGCGCGCTACGAAGACGCGCTGGCGGAGCTCTGCGCCCTCATGC
TCGGGGAGCGTGAGAAGGTGCGGTTCATTATGTTACAGCTTCCCCCCCAG
GCGGTTTGA
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