mRNA_P-wetherbeei_contig11570.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11570.3.1
Unique NamemRNA_P-wetherbeei_contig11570.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11570.3.1 vs. uniprot
Match: A0A7X9KI59_9ACTN (Uncharacterized protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KI59_9ACTN)

HSP 1 Score: 118 bits (296), Expect = 1.560e-31
Identity = 71/143 (49.65%), Postives = 86/143 (60.14%), Query Frame = 1
Query:    1 MKTRTLLLLAIGCGLAILLAGGVFLLRLSSDPGGTKALGIGDVGRAGDATVTLLAFQSDATTLVVDVRLGGVDDPEGVGGFTLVA------PGKVVTATDDSTCTAIAVAPTECTLVFDTTGLDGSSRQLLFRRADTQLRWSL 411
            M+TRTLLLLA+ CGLAILLAGG+ L RL++    T +L +G  G AGDA VT+          VV V L GVDDP+G+ GFTLV       P  VV   +  +CT   VAP ECTL F  TG     R LL +RAD ++RW L
Sbjct:    1 MRTRTLLLLAVSCGLAILLAGGIQLWRLANQEPPTPSLEVGGTGMAGDAIVTVTKATDAGDAFVVTVTLAGVDDPDGLEGFTLVGVDLAVKPSSVV---NPGSCTGFTVAPVECTLTFPNTGFPTDDRLLLLQRADDRVRWKL 140          
BLAST of mRNA_P-wetherbeei_contig11570.3.1 vs. uniprot
Match: A0A539E7Z3_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E7Z3_9ACTN)

HSP 1 Score: 117 bits (293), Expect = 4.700e-31
Identity = 71/143 (49.65%), Postives = 84/143 (58.74%), Query Frame = 1
Query:    1 MKTRTLLLLAIGCGLAILLAGGVFLLRLSSDPGGTKALGIGDVGRAGDATVTLLAFQSDATTLVVDVRLGGVDDPEGVGGFTLVAPGKVVTA-----TDDSTCTAIAVAPTECTLVFDTTGLDGSSRQLLFRRADTQLRWSLA 414
            M+TRTLLLLA+ CGLAIL+AG V LLRL  D  G   LG+GD   AGD TVT+ +       + V+V LGGVDD  GV GF LV PG+ +            C A+  A   CTLVF T    GS+R LL RR + Q RW LA
Sbjct:    1 MRTRTLLLLAVLCGLAILVAGSVQLLRLGGDGPGAGDLGVGDTASAGDMTVTVESAAETDGFMKVEVLLGGVDDESGVDGFRLVVPGRALVPLAAAQAGTDACAAVTTAEQRCTLVFGTAATTGSARVLLLRRGEDQRRWVLA 143          
BLAST of mRNA_P-wetherbeei_contig11570.3.1 vs. uniprot
Match: A0A6I3EWU9_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3EWU9_9ACTN)

HSP 1 Score: 114 bits (286), Expect = 5.090e-30
Identity = 71/141 (50.35%), Postives = 87/141 (61.70%), Query Frame = 1
Query:    1 MKTRTLLLLAIGCGLAILLAGGVFLLRLSSDPGGTKALGIGDVGRAGDATVTLLAFQSDATTLVVDVRLGGVDDPEGVGGFTLVAPGKVVTATDDS----TCTAIAVAPTECTLVFDTTGLDGSSRQLLFRRADTQLRWSL 411
            M+TRTLLLLA+ CGLAILLAGG+ LLR+++    ++ALG GD G AGDA + +  F      L V V L GVDDP+G+  FTLV   K V A   S    +CT   V  T CT+ F T G     RQLLF RA+ Q+RW L
Sbjct:    1 MRTRTLLLLAVTCGLAILLAGGIQLLRIANQDH-SQALGKGDKGVAGDAVIVVEDFTEANGVLTVTVTLSGVDDPKGIADFTLVGVPKPVDAVQASEAADSCTGFTVQATTCTITFPTDGFTTKDRQLLFIRAEEQVRWRL 140          
BLAST of mRNA_P-wetherbeei_contig11570.3.1 vs. uniprot
Match: A0A2E0RYB9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RYB9_9ACTN)

HSP 1 Score: 107 bits (267), Expect = 3.800e-27
Identity = 62/141 (43.97%), Postives = 82/141 (58.16%), Query Frame = 1
Query:    1 MKTRTLLLLAIGCGLAILLAGGVFLLRLSSDPGGTKALGIGDVGRAGDATVTLLAFQSDATTLVVDVRLGGVDDPEGVGGFTLVAPGKVVTATDDST---CTAIAVAPTECTLVFDTTGLDGSSRQLLFRRADTQLRWSLA 414
            MKTRTLLLLA+ CGLAI+LAG VFL +L+       A+ IG+    GD TV + A       L V +R+ GVDDP+G  GF L+A G+ +   +D     C A  V  T C + FD +  DG+SR L + R + Q RW L+
Sbjct:    1 MKTRTLLLLALACGLAIMLAGAVFLFQLAGQDDVADAIPIGEPVEIGDLTVEVEAADESDGVLSVGIRVAGVDDPDGASGFRLIASGRPLAPVEDDAADACAATTVEETVCVVRFDVSTADGTSRVLFYERGEEQARWVLS 141          
BLAST of mRNA_P-wetherbeei_contig11570.3.1 vs. uniprot
Match: A0A4R7I1G0_9ACTN (Uncharacterized protein n=2 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7I1G0_9ACTN)

HSP 1 Score: 107 bits (267), Expect = 5.600e-27
Identity = 61/140 (43.57%), Postives = 83/140 (59.29%), Query Frame = 1
Query:    4 KTRTLLLLAIGCGLAILLAGGVFLLRLSSDPGGTKALGIGDVGRAGDATVTLLAFQSDATTLVVDVRLGGVDDPEGVGGFTLVAPGKVVTATDDST---CTAIAVAPTECTLVFDTTGLDGSSRQLLFRRADTQLRWSLA 414
            KTRTLLLLA+ CGLAI+LAG VFL +L+     ++A+ IG+    GD T+ + A       L V +R+ GVDDP+G  GF L+A G+ +   D      C A  VA + C + FD +  DGSSR L + R + Q RW L+
Sbjct:   16 KTRTLLLLALACGLAIMLAGAVFLFQLAGQDDVSEAVPIGEPVDVGDLTIEVEAADEADGVLSVGIRIAGVDDPDGAAGFRLIASGRPIAPVDTDAPDACAATTVAESVCVVRFDVSSADGSSRVLFYERGEEQARWVLS 155          
BLAST of mRNA_P-wetherbeei_contig11570.3.1 vs. uniprot
Match: A0A7W1HIT0_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1HIT0_9ACTN)

HSP 1 Score: 105 bits (263), Expect = 1.530e-26
Identity = 64/138 (46.38%), Postives = 80/138 (57.97%), Query Frame = 1
Query:    1 MKTRTLLLLAIGCGLAILLAGGVFLLRLSSDPGGTKALGIGDVGRAGDATVTLLAFQSDATTLVVDVRLGGVDDPEGVGGFTLVAPGKVVTATDDS-TCTAIAVAPTECTLVFDTTGLDGSSRQLLFRRADTQLRWSL 411
            M+T+TLLLLA+ CGL IL AG V LLR+++     +A  +GDV   GD TVT+L F       VV V +GGVDDP+G   F LV PG  +  T  +  C    V    C LVF      G+SR LL+RR D Q+RW L
Sbjct:    1 MRTKTLLLLAVACGLVILAAGVVQLLRVAAQDDPARAGAVGDVVAVGDLTVTVLDFAERDGRGVVSVEVGGVDDPDGTDEFRLVVPGAALPPTTGAEACAGTTVTAQRCDLVFGLPQAPGTSRVLLYRRGDEQVRWEL 138          
BLAST of mRNA_P-wetherbeei_contig11570.3.1 vs. uniprot
Match: A0A7W0KXZ1_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0KXZ1_9ACTN)

HSP 1 Score: 101 bits (252), Expect = 7.390e-25
Identity = 63/143 (44.06%), Postives = 81/143 (56.64%), Query Frame = 1
Query:    1 MKTRTLLLLAIGCGLAILLAGGVFLLRLSSDPGGTKALGIGDVGRAGDATVTLLAFQSDATTLVVDVRLGGVDDPEGVGGFTLVAPGKVVTATDDST---CTAIAVAPTECTLVFDTTGLDGSSRQLLFRRADTQLRWSLAAA 420
            M+TRTLLLLA+ CG+AIL AG V L+RL+       ++ +G   R GD  VT+ +  +    LVV V +GGVDDP+G+  F LV PG  V  T  S    C  +      CT+ F      GSSR LL+RR D + RW LA A
Sbjct:    1 MRTRTLLLLAVACGVAILAAGVVQLIRLAGHEAPPASVAVGTAVRLGDVVVTVESVAAVDDELVVRVEIGGVDDPDGIDEFRLVVPGASVAPTAPSAADRCAVVTERWQRCTIAFRVPPDAGSSRVLLYRRGDERARWDLAGA 143          
BLAST of mRNA_P-wetherbeei_contig11570.3.1 vs. uniprot
Match: A0A7K1BDP7_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K1BDP7_9ACTN)

HSP 1 Score: 98.2 bits (243), Expect = 1.820e-23
Identity = 63/143 (44.06%), Postives = 82/143 (57.34%), Query Frame = 1
Query:    1 MKTRTLLLLAIGCGLAILLAGGVFLLRLSSDPGG-TKALGIGDVGRAGDATVTLLAFQSDATTLVVDVRLGGVDDPEGVGGFTLVAPGKVVTA-----TDDSTCTAIAVAPTECTLVFDTTGLDGSSRQLLFRRADTQLRWSL 411
            M+TRTLLLLA+ CGL IL+AG + LLR+  D       L +GD  RAGD  VT+L        L V++RL GVDDP G+ GF L+  G+++         +  CT++ VA   C LVF T    G  R LL RR + Q RW+L
Sbjct:    1 MRTRTLLLLAVVCGLVILVAGSLQLLRVIGDTDTPVDDLAVGDSARAGDLDVTVLDTDETDGLLRVNLRLEGVDDPAGLDGFRLIVSGELLAPLTAEQAGEGACTSLTVAAQTCDLVFGTAEATGDVRVLLVRRGEDQHRWNL 143          
BLAST of mRNA_P-wetherbeei_contig11570.3.1 vs. uniprot
Match: A0A7W1LQ33_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1LQ33_9ACTN)

HSP 1 Score: 96.3 bits (238), Expect = 9.780e-23
Identity = 59/143 (41.26%), Postives = 80/143 (55.94%), Query Frame = 1
Query:    1 MKTRTLLLLAIGCGLAILLAGGVFLLRLSSDPGGTKALGIGDVGRAGDATVTLLAFQSDATTLVVDVRLGGVDDPEGVGGFTLVAPG-----KVVTATDDSTCTAIAVAPTECTLVFDTTGLDGSSRQLLFRRADTQLRWSLA 414
            MKTRTLLLL+I  GLAIL+AGG+ L+R+S    G     +G+V    D  VT+    ++   L V + LGGV+D +   GF LVAP       V + +D + C    V PT C L FD  G  G +R L ++R D + RW L+
Sbjct:    1 MKTRTLLLLSIVTGLAILVAGGIQLIRVSGQESGIPNRAVGEVVSVADMDVTVEGASANGDELTVTITLGGVEDDDATEGFELVAPDVGVLEPVRSDSDVAPCATTTVTPTRCELRFDLAGAGGDTRTLRYQRGDERARWLLS 143          
BLAST of mRNA_P-wetherbeei_contig11570.3.1 vs. uniprot
Match: UPI000E350EC5 (hypothetical protein n=1 Tax=Desertimonas flava TaxID=2064846 RepID=UPI000E350EC5)

HSP 1 Score: 95.9 bits (237), Expect = 1.310e-22
Identity = 62/140 (44.29%), Postives = 77/140 (55.00%), Query Frame = 1
Query:    1 MKTRTLLLLAIGCGLAILLAGGVFLLRLSSDPGGTKALGIGDVGRAGDATVTLLAFQSDATTLVVDVRLGGVDDPEGVGGFTLVAPGKVVTATD--DSTCTAIAVAPTECTLVFDTTG-LDGSSRQLLFRRADTQLRWSL 411
            M+TRTLLLLA+GCGLAIL+AG VFLL+L++D        +G+    GD  V +  +     T  V V LGGVDD +G+  F LV     ++     D  CT   VA   CTL FD      G SR LL+RR D   RW L
Sbjct:    1 MRTRTLLLLAVGCGLAILVAGTVFLLQLANDDQQADFHAVGESVEVGDLHVVVDDYDETDDTATVSVTLGGVDDADGIDEFRLVLADASLSPVSGADGACTDTTVADQSCTLTFDLADDAPGGSRILLYRRGDDVARWEL 140          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11570.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A7X9KI59_9ACTN1.560e-3149.65Uncharacterized protein n=2 Tax=Actinobacteria Tax... [more]
A0A539E7Z3_9ACTN4.700e-3149.65Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6I3EWU9_9ACTN5.090e-3050.35Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A2E0RYB9_9ACTN3.800e-2743.97Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A4R7I1G0_9ACTN5.600e-2743.57Uncharacterized protein n=2 Tax=Ilumatobacter flum... [more]
A0A7W1HIT0_9ACTN1.530e-2646.38Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A7W0KXZ1_9ACTN7.390e-2544.06Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A7K1BDP7_9ACTN1.820e-2344.06Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A7W1LQ33_9ACTN9.780e-2341.26Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
UPI000E350EC51.310e-2244.29hypothetical protein n=1 Tax=Desertimonas flava Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11570contigP-wetherbeei_contig11570:1183..1605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size423
Hectar predicted targeting categorysignal peptide
Exons1
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185917.0133731-CDS-P-wetherbeei_contig11570:1182..16051683185917.0133731-CDS-P-wetherbeei_contig11570:1182..1605Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11570 1183..1605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11570.3.1prot_P-wetherbeei_contig11570.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11570 1183..1605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11570.3.1

>prot_P-wetherbeei_contig11570.3.1 ID=prot_P-wetherbeei_contig11570.3.1|Name=mRNA_P-wetherbeei_contig11570.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=141bp
MKTRTLLLLAIGCGLAILLAGGVFLLRLSSDPGGTKALGIGDVGRAGDAT
VTLLAFQSDATTLVVDVRLGGVDDPEGVGGFTLVAPGKVVTATDDSTCTA
IAVAPTECTLVFDTTGLDGSSRQLLFRRADTQLRWSLAAA*
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mRNA from alignment at P-wetherbeei_contig11570:1183..1605+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11570.3.1 ID=mRNA_P-wetherbeei_contig11570.3.1|Name=mRNA_P-wetherbeei_contig11570.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig11570:1183..1605+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGACCCGCACGCTGCTGCTGCTGGCGATCGGCTGCGGCCTGGCCAT CCTGCTGGCCGGCGGCGTCTTCCTGCTCAGGCTGTCGAGCGACCCTGGCG GAACCAAGGCGCTGGGGATCGGTGACGTCGGCCGAGCGGGCGATGCCACC GTCACCCTGCTCGCGTTCCAGTCGGACGCGACGACGCTCGTCGTCGACGT GCGCCTCGGTGGCGTCGACGATCCCGAAGGAGTCGGCGGCTTCACCTTGG TCGCTCCGGGCAAGGTGGTGACGGCGACGGACGACAGCACGTGCACCGCC ATCGCCGTCGCGCCGACCGAGTGCACGCTGGTGTTCGACACCACCGGGCT CGACGGAAGCAGCCGGCAGCTGCTCTTCCGGCGTGCCGACACGCAGCTGC GCTGGTCGCTCGCCGCTGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11570:1183..1605+

>mRNA_P-wetherbeei_contig11570.3.1 ID=mRNA_P-wetherbeei_contig11570.3.1|Name=mRNA_P-wetherbeei_contig11570.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=423bp|location=Sequence derived from alignment at P-wetherbeei_contig11570:1183..1605+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGACCCGCACGCTGCTGCTGCTGGCGATCGGCTGCGGCCTGGCCAT
CCTGCTGGCCGGCGGCGTCTTCCTGCTCAGGCTGTCGAGCGACCCTGGCG
GAACCAAGGCGCTGGGGATCGGTGACGTCGGCCGAGCGGGCGATGCCACC
GTCACCCTGCTCGCGTTCCAGTCGGACGCGACGACGCTCGTCGTCGACGT
GCGCCTCGGTGGCGTCGACGATCCCGAAGGAGTCGGCGGCTTCACCTTGG
TCGCTCCGGGCAAGGTGGTGACGGCGACGGACGACAGCACGTGCACCGCC
ATCGCCGTCGCGCCGACCGAGTGCACGCTGGTGTTCGACACCACCGGGCT
CGACGGAAGCAGCCGGCAGCTGCTCTTCCGGCGTGCCGACACGCAGCTGC
GCTGGTCGCTCGCCGCTGCCTGA
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