mRNA_P-wetherbeei_contig11570.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11570.2.1
Unique NamemRNA_P-wetherbeei_contig11570.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11570.2.1 vs. uniprot
Match: A0A7X9KK43_9ACTN (OB-fold nucleic acid binding domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9KK43_9ACTN)

HSP 1 Score: 173 bits (438), Expect = 9.350e-54
Identity = 82/116 (70.69%), Postives = 100/116 (86.21%), Query Frame = 1
Query:    1 MGLRDLAKRLKATVEELDDERLQERFAGLGVTAMSAVAPRTPVRVGGEVQRMRIAPRSGVPAFEITVSDGSGDVVAVFTGRRQVAGISHNRALVLEGVARLERNRLVMLNPAYTLI 348
            MGLRDLAKRL+ +V+ELDD RLQ+RF+GLG+T +  +  RTPVRVGGE+ RMR+APRSGV AFE+T+ DG+G  VAVFTGRR +AG+ HNRA+VLEGVAR ER RL+MLNPAYTL+
Sbjct:    1 MGLRDLAKRLRTSVDELDDRRLQDRFSGLGLTCIGEMTARTPVRVGGEITRMRVAPRSGVQAFEVTIDDGTGTAVAVFTGRRHLAGVEHNRAVVLEGVARAERGRLMMLNPAYTLL 116          
BLAST of mRNA_P-wetherbeei_contig11570.2.1 vs. uniprot
Match: A0A6I3EXE4_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3EXE4_9ACTN)

HSP 1 Score: 162 bits (409), Expect = 2.450e-49
Identity = 78/116 (67.24%), Postives = 95/116 (81.90%), Query Frame = 1
Query:    1 MGLRDLAKRLKATVEELDDERLQERFAGLGVTAMSAVAPRTPVRVGGEVQRMRIAPRSGVPAFEITVSDGSGDVVAVFTGRRQVAGISHNRALVLEGVARLERNRLVMLNPAYTLI 348
            MGLRDLAKRL  +VE++DDERLQ+RF  L VT + AV PRT  R+GGE+ R RI PRSGVP+FEI++SDG+G  VAVFTGRR + G+ H+RA+VLEGV R ER R+VMLNPAYTL+
Sbjct:    1 MGLRDLAKRLSVSVEQIDDERLQDRFTNLDVTKIGAVTPRTQSRIGGEITRTRITPRSGVPSFEISISDGTGTAVAVFTGRRHMPGLEHHRAVVLEGVPRSERGRMVMLNPAYTLL 116          
BLAST of mRNA_P-wetherbeei_contig11570.2.1 vs. uniprot
Match: A0A6I3X2C6_9ACTN (DNA-binding protein n=2 Tax=root TaxID=1 RepID=A0A6I3X2C6_9ACTN)

HSP 1 Score: 155 bits (391), Expect = 1.390e-46
Identity = 75/117 (64.10%), Postives = 94/117 (80.34%), Query Frame = 1
Query:    1 MGLRDLAKRLKATVEELDDERLQERFAGLGVTAMSAVAPRTPVRVGGEVQRMRIAPRSGVPAFEITVSDGSGDVVAVFTGRRQVAGISHNRALVLEGVARLERNRLVMLNPAYTLIA 351
            MGLRDLA RLKA  EELD ERL +RF G+ +T +  +  RTP RVGGEV+R+R+APR G+PA E+ ++DG+ DVVAVFTGRR +AGI H RA+++EG+AR ER R VMLNPAYTLI+
Sbjct:    2 MGLRDLANRLKAKPEELDAERLHDRFGGMDLTPIDQLECRTPSRVGGEVKRIRVAPRKGIPALEMVLTDGTADVVAVFTGRRHIAGIEHGRAVIIEGIAREERGRKVMLNPAYTLIS 118          
BLAST of mRNA_P-wetherbeei_contig11570.2.1 vs. uniprot
Match: UPI000E350D42 (OB-fold nucleic acid binding domain-containing protein n=1 Tax=Desertimonas flava TaxID=2064846 RepID=UPI000E350D42)

HSP 1 Score: 139 bits (351), Expect = 1.510e-40
Identity = 67/111 (60.36%), Postives = 86/111 (77.48%), Query Frame = 1
Query:   16 LAKRLKATVEELDDERLQERFAGLGVTAMSAVAPRTPVRVGGEVQRMRIAPRSGVPAFEITVSDGSGDVVAVFTGRRQVAGISHNRALVLEGVARLERNRLVMLNPAYTLI 348
            L +RL+A+VEEL+  RL +RFAGL ++ +S V PR P+RVGGE+ R+ IAPR GVP  E+ +SDGSG + AVFTGRR + GI H RA++LEGVA  ER+R V+ NPAYTLI
Sbjct:    4 LGQRLRASVEELERTRLSQRFAGLDLSPLSGVVPRRPIRVGGEISRVVIAPRHGVPTLEVMISDGSGSITAVFTGRRSIGGIEHGRAVILEGVAVPERDRNVIFNPAYTLI 114          
BLAST of mRNA_P-wetherbeei_contig11570.2.1 vs. uniprot
Match: UPI001AA04D50 (OB-fold nucleic acid binding domain-containing protein n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA04D50)

HSP 1 Score: 130 bits (326), Expect = 1.020e-36
Identity = 62/111 (55.86%), Postives = 83/111 (74.77%), Query Frame = 1
Query:   16 LAKRLKATVEELDDERLQERFAGLGVTAMSAVAPRTPVRVGGEVQRMRIAPRSGVPAFEITVSDGSGDVVAVFTGRRQVAGISHNRALVLEGVARLERNRLVMLNPAYTLI 348
            + +RL A+V++LD  RLQER+ GLG+T +     R PVRVGGE+Q  R+ PR+G PA E+T+SDG+G    VFTGR+ + G++  R +VLEGVAR ER RLV+LNPAYTL+
Sbjct:    7 IRQRLTASVQQLDQARLQERYQGLGLTPIGEAPLREPVRVGGEIQESRLVPRAGSPAVEVTISDGTGRATGVFTGRKVLHGVTLGRGMVLEGVARTERGRLVLLNPAYTLL 117          
BLAST of mRNA_P-wetherbeei_contig11570.2.1 vs. uniprot
Match: A0A7W1CPE9_9ACTN (OB-fold nucleic acid binding domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1CPE9_9ACTN)

HSP 1 Score: 127 bits (319), Expect = 1.180e-35
Identity = 65/116 (56.03%), Postives = 83/116 (71.55%), Query Frame = 1
Query:    1 MGLRDLAKRLKATVEELDDERLQERFAGLGVTAMSAVAPRTPVRVGGEVQRMRIAPRSGVPAFEITVSDGSGDVVAVFTGRRQVAGISHNRALVLEGVARLERNRLVMLNPAYTLI 348
            MG R L +RL ++V ELD  RLQ+R   L VT +  +  R PVRVGGEV+R+  APR+GVP FE+ +SDG+G+V AVF GRR++ GI H RA+VLEGVA   R   V+ NPAYTL+
Sbjct:    1 MGHRTLRQRLGSSVSELDRTRLQDRCRDLAVTPLDRLPHRVPVRVGGEVKRVMHAPRNGVPNFEVMISDGAGEVTAVFAGRRRIPGIEHGRAIVLEGVALEVRGHCVIYNPAYTLV 116          
BLAST of mRNA_P-wetherbeei_contig11570.2.1 vs. uniprot
Match: A0A0R2QX74_9ACTN (Uncharacterized protein n=5 Tax=root TaxID=1 RepID=A0A0R2QX74_9ACTN)

HSP 1 Score: 124 bits (312), Expect = 1.540e-34
Identity = 60/116 (51.72%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    1 MGLRDLAKRLKATVEELDDERLQERFAGLGVTAMSAVAPRTPVRVGGEVQRMRIAPRSGVPAFEITVSDGSGDVVAVFTGRRQVAGISHNRALVLEGVARLERNRLVMLNPAYTLI 348
            MGL+++ K     + ELD ERL +RFA L +T +  VA RT V+V GEV+RM + PRSG+P+ EI ++DG+G V  +F+GRR ++GI H   L +EGVA  ERN  V LNPAYTL+
Sbjct:    1 MGLKNIVKSANKGIRELDAERLVDRFAELNLTPLGEVAVRTKVKVCGEVKRMTMKPRSGIPSMEIVINDGTGQVTVIFSGRRHISGIEHGGCLAVEGVAHRERNSTVFLNPAYTLL 116          
BLAST of mRNA_P-wetherbeei_contig11570.2.1 vs. uniprot
Match: A0A7K1DIJ7_9ACTN (Uncharacterized protein n=8 Tax=root TaxID=1 RepID=A0A7K1DIJ7_9ACTN)

HSP 1 Score: 120 bits (301), Expect = 6.430e-33
Identity = 55/117 (47.01%), Postives = 81/117 (69.23%), Query Frame = 1
Query:    1 MGLRDLAKRLKATVEELDDERLQERFAGLGVTAMSAVAPRTPVRVGGEVQRMRIAPRSGVPAFEITVSDGSGDVVAVFTGRRQVAGISHNRALVLEGVARLERNRLVMLNPAYTLIA 351
            MG+R   KRL A  +E+D +RL +RF   G T++  +  RT  ++ GEV+RMR  PRSG+PA E+ +SDG+GD V +F+GRR + GI   R ++++GV   + +R V+LNPAYTL+A
Sbjct:    1 MGIRSFGKRLNADTQEIDTQRLCQRFKDTGFTSLEDLQLRTRTKIAGEVKRMRTKPRSGIPAVEVVISDGTGDAVIIFSGRRNIPGIDLGRCIMIDGVPHRDADRTVVLNPAYTLLA 117          
BLAST of mRNA_P-wetherbeei_contig11570.2.1 vs. uniprot
Match: A0A8F4FRT2_9ACTN (Uncharacterized protein n=1 Tax=Aquihabitans sp. G128 TaxID=2849779 RepID=A0A8F4FRT2_9ACTN)

HSP 1 Score: 120 bits (300), Expect = 8.850e-33
Identity = 53/114 (46.49%), Postives = 87/114 (76.32%), Query Frame = 1
Query:    7 LRDLAKRLKATVEELDDERLQERFAGLGVTAMSAVAPRTPVRVGGEVQRMRIAPRSGVPAFEITVSDGSGDVVAVFTGRRQVAGISHNRALVLEGVARLERNRLVMLNPAYTLI 348
            L++L K+L  +++++++ERLQ R A LGVT ++    RT + +GGEVQ +++ PR+G P+ E+T+ DGSG  VAVFTGRR++AG+   R +++EGV R ER R++++NP+YT++
Sbjct:    2 LKNLRKKLSQSIDDIEEERLQGRSADLGVTRIADAPTRTSIIIGGEVQGLQVVPRAGSPSLEVTIGDGSGRAVAVFTGRRRLAGVDCGRRVLIEGVGREERGRILVVNPSYTIV 115          
BLAST of mRNA_P-wetherbeei_contig11570.2.1 vs. uniprot
Match: A0A6L6D7E3_9ACTN (DNA-binding protein n=5 Tax=root TaxID=1 RepID=A0A6L6D7E3_9ACTN)

HSP 1 Score: 120 bits (300), Expect = 1.030e-32
Identity = 58/116 (50.00%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    1 MGLRDLAKRLKATVEELDDERLQERFAGLGVTAMSAVAPRTPVRVGGEVQRMRIAPRSGVPAFEITVSDGSGDVVAVFTGRRQVAGISHNRALVLEGVARLERNRLVMLNPAYTLI 348
            MGL+++ K     V E+D ERL +RF  LG+  +S + PR   +V GEV+RM I PR+G+P+ EI ++DGSG+   VF+GRR VAGI H   LV++GV   +  RLV LNPAYTL+
Sbjct:    1 MGLKNVLKSASMGVREMDAERLTDRFIALGLQPLSELEPRFKAKVCGEVKRMSIKPRAGIPSMEIVINDGSGEATVVFSGRRHVAGIEHGHCLVVDGVPHQDGKRLVFLNPAYTLL 116          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11570.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9KK43_9ACTN9.350e-5470.69OB-fold nucleic acid binding domain-containing pro... [more]
A0A6I3EXE4_9ACTN2.450e-4967.24Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6I3X2C6_9ACTN1.390e-4664.10DNA-binding protein n=2 Tax=root TaxID=1 RepID=A0A... [more]
UPI000E350D421.510e-4060.36OB-fold nucleic acid binding domain-containing pro... [more]
UPI001AA04D501.020e-3655.86OB-fold nucleic acid binding domain-containing pro... [more]
A0A7W1CPE9_9ACTN1.180e-3556.03OB-fold nucleic acid binding domain-containing pro... [more]
A0A0R2QX74_9ACTN1.540e-3451.72Uncharacterized protein n=5 Tax=root TaxID=1 RepID... [more]
A0A7K1DIJ7_9ACTN6.430e-3347.01Uncharacterized protein n=8 Tax=root TaxID=1 RepID... [more]
A0A8F4FRT2_9ACTN8.850e-3346.49Uncharacterized protein n=1 Tax=Aquihabitans sp. G... [more]
A0A6L6D7E3_9ACTN1.030e-3250.00DNA-binding protein n=5 Tax=root TaxID=1 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11570contigP-wetherbeei_contig11570:770..1132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog469371.Tbis_2288
Model size363
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.71e-21
EggNOG OGsCOG1200@1|root,COG1200@2|Bacteria,2IHRX@201174|Actinobacteria,4E4G1@85010|Pseudonocardiales
DescriptionNucleic acid binding, OB-fold, tRNA
Cds size363
COG categoryKL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185916.9862456-CDS-P-wetherbeei_contig11570:769..11321683185916.9862456-CDS-P-wetherbeei_contig11570:769..1132Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11570 770..1132 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11570.2.1prot_P-wetherbeei_contig11570.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11570 770..1132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11570.2.1

>prot_P-wetherbeei_contig11570.2.1 ID=prot_P-wetherbeei_contig11570.2.1|Name=mRNA_P-wetherbeei_contig11570.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MGLRDLAKRLKATVEELDDERLQERFAGLGVTAMSAVAPRTPVRVGGEVQ
RMRIAPRSGVPAFEITVSDGSGDVVAVFTGRRQVAGISHNRALVLEGVAR
LERNRLVMLNPAYTLIAQDH*
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mRNA from alignment at P-wetherbeei_contig11570:770..1132-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11570.2.1 ID=mRNA_P-wetherbeei_contig11570.2.1|Name=mRNA_P-wetherbeei_contig11570.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig11570:770..1132- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCTGCGAGATCTCGCCAAACGGTTGAAGGCGACGGTCGAGGAGCT CGACGACGAACGTCTGCAGGAGCGGTTCGCGGGCCTCGGCGTCACCGCGA TGTCCGCCGTCGCGCCGCGTACACCGGTACGCGTCGGGGGCGAGGTGCAG CGGATGCGCATCGCCCCTCGCTCGGGCGTCCCGGCCTTCGAGATCACGGT CAGCGACGGGTCCGGCGACGTGGTCGCCGTGTTCACCGGACGACGTCAGG TCGCCGGCATCAGCCACAACCGCGCGCTCGTCCTCGAAGGCGTCGCCCGC CTCGAGCGCAACCGCCTGGTGATGCTCAACCCCGCCTACACGTTGATCGC CCAAGACCACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11570:770..1132-

>mRNA_P-wetherbeei_contig11570.2.1 ID=mRNA_P-wetherbeei_contig11570.2.1|Name=mRNA_P-wetherbeei_contig11570.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig11570:770..1132- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCTGCGAGATCTCGCCAAACGGTTGAAGGCGACGGTCGAGGAGCT
CGACGACGAACGTCTGCAGGAGCGGTTCGCGGGCCTCGGCGTCACCGCGA
TGTCCGCCGTCGCGCCGCGTACACCGGTACGCGTCGGGGGCGAGGTGCAG
CGGATGCGCATCGCCCCTCGCTCGGGCGTCCCGGCCTTCGAGATCACGGT
CAGCGACGGGTCCGGCGACGTGGTCGCCGTGTTCACCGGACGACGTCAGG
TCGCCGGCATCAGCCACAACCGCGCGCTCGTCCTCGAAGGCGTCGCCCGC
CTCGAGCGCAACCGCCTGGTGATGCTCAACCCCGCCTACACGTTGATCGC
CCAAGACCACTGA
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