mRNA_P-wetherbeei_contig11555.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11555.3.1
Unique NamemRNA_P-wetherbeei_contig11555.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11555.3.1 vs. uniprot
Match: D8LDG6_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG6_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 2.960e-45
Identity = 109/265 (41.13%), Postives = 145/265 (54.72%), Query Frame = 1
Query:    1 KEFSFSRVFAPGSAQADIYDATTKPLVADLLRGRSGLVFAYGMTNAGKTYTTMGERDAAGEKTGILPRALQDIFEGAAVAEAAGGVRPGVSMSFLEIYNENVYDLLATSKSE--------VRRTDGSAFGGSFESRRHAVDSPQAAIELLTRGNRNRQVASTKLNEDSSRSHSVCSIEIDAVTLPAGSDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAEPSVLWIVDLAGSERSARTGTDHRSDRQKEANNINLSLTTLW 771
            K+F F+RVF+  + Q + Y++T +PLV D+   ++ L+FAYGMTNAGKTYT +GE  + G    ++P+AL D F G      A      V MSFLEIY ENVYDLLA + ++        ++  D      + +  +H + S    ++L+ R   NR+VAST+LNEDSSRSHSVC I++       G DS+                                    LW+VDLAGSERS RTG    S RQKEANNIN SL+TLW
Sbjct:  135 KDFGFTRVFSSEAGQVETYESTMRPLVDDVFSAQNALLFAYGMTNAGKTYTVLGEDGSPG----LIPQALTDTF-GRVAQMGADEAEVRVEMSFLEIYIENVYDLLAATDTDDWAKARTALKLDDRKGVIQARDLSKHVIKSATDGLDLVRRATANRRVASTRLNEDSSRSHSVCMIKL---VREKGKDSS------------------------------------LWVVDLAGSERSGRTGAGASSTRQKEANNINKSLSTLW 355          
BLAST of mRNA_P-wetherbeei_contig11555.3.1 vs. uniprot
Match: A0A6H5JEB3_9PHAE (Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEB3_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 1.860e-44
Identity = 108/265 (40.75%), Postives = 144/265 (54.34%), Query Frame = 1
Query:    1 KEFSFSRVFAPGSAQADIYDATTKPLVADLLRGRSGLVFAYGMTNAGKTYTTMGERDAAGEKTGILPRALQDIFEGAAVAEAAGGVRPGVSMSFLEIYNENVYDLLATSKSE--------VRRTDGSAFGGSFESRRHAVDSPQAAIELLTRGNRNRQVASTKLNEDSSRSHSVCSIEIDAVTLPAGSDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAEPSVLWIVDLAGSERSARTGTDHRSDRQKEANNINLSLTTLW 771
            K+F F+RV +  + Q + Y++T +PLV D+   ++ L+FAYGMTNAGKTYT +GE  + G    ++P+AL D F G      A      V MSFLEIY ENVYDLLA + ++        ++  D      + +  +H + S    ++L+ R   NR+VAST+LNEDSSRSHSVC I++       G DS+                                    LW+VDLAGSERS RTG    S RQKEANNIN SL+TLW
Sbjct:  136 KDFGFTRVLSSEAGQVETYESTMRPLVDDVFSAQNALLFAYGMTNAGKTYTVLGEDGSPG----LIPQALTDTF-GRVAQMGAEEAEVRVEMSFLEIYIENVYDLLAAADTDDWAKARTALKLDDRKGVIQARDLSKHVIKSATDGLDLVRRATANRRVASTRLNEDSSRSHSVCMIKL---VREKGKDSS------------------------------------LWVVDLAGSERSGRTGAGASSTRQKEANNINKSLSTLW 356          
BLAST of mRNA_P-wetherbeei_contig11555.3.1 vs. uniprot
Match: A0A4D9CZ51_9STRA (Kinesin-like protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ51_9STRA)

HSP 1 Score: 145 bits (367), Expect = 4.640e-36
Identity = 118/265 (44.53%), Postives = 149/265 (56.23%), Query Frame = 1
Query:    1 KEFSFSRVFAPGSAQADIYDATTKPLVADLLRGRSGLVFAYGMTNAGKTYTTMGERDAAGEKTGILPRALQDIF-----EGAAVAEAAG---GVRPGVSMSFLEIYNENVYDLLATSKSEVRRTDGSAFGGSFESRRHAVDSPQAAIELLTRGNRNRQVASTKLNEDSSRSHSVCSIEIDAVTLPAGSDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAEPSVLWIVDLAGSERSARTGTDHRSDRQKEANNINLSLTTLW 771
            +EF+F RV  P   Q ++Y  T +PLV  L  G+SGL+FAYG+TNAGKTYT MG+   AG    +LPRALQD+F     E A   EA G   G+   V  S+LEIYNE +YDLL+         +G   GG   SR          + L+ +G++NR++A+T+LN DSSRSHSV ++E+    L  G    XXXXXXXXXXXXX                       LW+VDLAGSER +RTG       Q+E N IN SL  LW
Sbjct:  128 REFTFHRVLGPECRQEEVYRQTAQPLVDALWMGQSGLLFAYGVTNAGKTYTIMGKEGDAG----VLPRALQDLFARVEREEAGRREAVGEGGGIVRRVVCSYLEIYNEQIYDLLSG--------EGGGEGGRGWSR----------LALVKQGSQNRRMAATRLNLDSSRSHSVFTVEV----LREGGKXXXXXXXXXXXXXXX----------------------TLWVVDLAGSERGSRTGHGLDKKLQRETNGINTSLMKLW 344          
BLAST of mRNA_P-wetherbeei_contig11555.3.1 vs. uniprot
Match: A0A7S1YTC8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YTC8_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.270e-33
Identity = 103/297 (34.68%), Postives = 142/297 (47.81%), Query Frame = 1
Query:    1 KEFSFSRVFAPGSAQADIYDATTKPLVADLLR------GRSGLVFAYGMTNAGKTYTTMG----------ERDAA-GEKTGILPRALQDIFEGAAVAEAAGGVRPGVSMSFLEIYNENVYDLLATSKSE-----------------------VRRT-DGSAFGGSFESRRHAVDSPQAAIELLTRGNRNRQVASTKLNEDSSRSHSVCSIEIDAVTLPAGSDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAEPSVLWIVDLAGSERSARTGTDHRSDRQKEANNINLSLTTL 768
            KEF F++VF P ++QAD+Y++   PLV  L        G+S L+FAYG+TNAGKT+T MG          E D+A    +GI+PRAL  I +     EA+   +  + MS+ EIYNE+++DLL    S+                       +R + DG+ F       +H V S    +EL     +NR  +S  +N DSSRSH +C +E+  +      D                                  E S +WIVDLAGSERS RTG  + S RQKEA++IN SL  L
Sbjct:  241 KEFHFNQVFCPDASQADVYESVAAPLVEGLFHNDQQKLGQSALLFAYGITNAGKTHTIMGSGNKSYKSGSETDSAINLNSGIMPRALHHIIQRIEETEASQQ-KVQLCMSYFEIYNEHIFDLLPNENSKRSXXXXXXXXXXXRGFNASVPLKLRESRDGNIFVRGLA--KHRVKSVAHGLELALTAKKNRHTSSNNINSDSSRSHCICQLELVQINPHEADDDESRAGSESGYSTEQEEATISR---------NKRESSSMWIVDLAGSERSKRTGVMNMSSRQKEASSINASLMKL 525          
BLAST of mRNA_P-wetherbeei_contig11555.3.1 vs. uniprot
Match: K3WWC5_GLOUD (Kinesin-like protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWC5_GLOUD)

HSP 1 Score: 133 bits (335), Expect = 4.200e-33
Identity = 104/262 (39.69%), Postives = 132/262 (50.38%), Query Frame = 1
Query:    7 FSFSRVFAPGSAQADIYDATTKPLVADLLRGRSGLVFAYGMTNAGKTYTTMGERDAAGEKTGILPRALQ-DIFEGAAVAEAAGGVRPGVSMSFLEIYNENVYDLLATSKSEVRRT------DGSA-FGGSFESRRHAVDSPQAAIELLTRGNRNRQVASTKLNEDSSRSHSVCSIEIDAVTLPAGSDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAEPSVLWIVDLAGSERSARTGTDHRSDRQKEANNINLSLTTL 768
            F FSR+F P +AQ D+++ATTKP++     G+SGLVFAYG+TN+GKTYT  G  D    K G+LPRAL+  I E     E        V+ S+LEIYNENVYDLLA      RR       DG     G  E     ++S +   ++L  G +N+QVA T  N DSSRSH V ++     T  +G                                   A  S + IVDLAGSERSA+TG      R +EA+ IN SL  L
Sbjct:  134 FQFSRIFPPETAQRDLFEATTKPVIHAAFEGKSGLVFAYGVTNSGKTYTISGTDD----KPGVLPRALKYAIQEMTRRKENEAQPVTHVTASYLEIYNENVYDLLAAPAKRKRRALRLQDCDGKIQVKGMLEK---PINSIKDGEDILATGTKNKQVAETNCNTDSSRSHCVFTLHFYHKTSQSGM----------------------------------ALRSKVSIVDLAGSERSAKTGATGL--RMQEASKINGSLMNL 352          
BLAST of mRNA_P-wetherbeei_contig11555.3.1 vs. uniprot
Match: L1IVX0_GUITC (Kinesin-like protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IVX0_GUITC)

HSP 1 Score: 128 bits (322), Expect = 6.430e-32
Identity = 100/270 (37.04%), Postives = 143/270 (52.96%), Query Frame = 1
Query:    4 EFSFSRVFAPGSAQADIYDATTKPLVADLLRGRSGLVFAYGMTNAGKTYTTMGERDAAGEKTGILPRALQDIFEGAAVAEAAGGVRPGVSMSFLEIYNENVYDLLAT----SKSEVRRT------DGSAFGGSFESRRHAVDSPQAAIELLTRGNRNRQVASTKLNEDSSRSHSVCSIEIDAVTLP-AGSDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAEPSVLW----IVDLAGSERSARTGTDHRSDRQKEANNINLSLTTL 768
            ++ F+RVF PG+ Q  +Y+ T  P+V  L  G++GL+FAYG TN+GKT+T  G++   GEK GILPR+L  +F       A       V ++F+EIYNENVYDLL      +K+E R+       +G         R   V + + A ++L  G R+RQVA T +N+ SSRSHSV +I++    +P  GS++                                 EPS ++    IVDLAGSER+ +T      +R KEA+NIN+SL  L
Sbjct:   12 KYRFTRVFGPGTPQESLYEETALPMVKGLFDGQNGLIFAYGPTNSGKTFTIQGDK---GEKAGILPRSLSTVFNEVDERNANSQEDWTVWVTFMEIYNENVYDLLDVPPDKTKNEPRKVCKLKEHNGQVHIKGL--RELQVRNLEEAKQVLRYGARHRQVAETMMNDVSSRSHSVFNIKL----VPNRGSET------------------------------DPTEPSQVYSKLAIVDLAGSERALKTKAT--GERLKEASNINVSLMNL 240          
BLAST of mRNA_P-wetherbeei_contig11555.3.1 vs. uniprot
Match: A0A183P7K6_9TREM (Kinesin-like protein n=3 Tax=Schistosoma TaxID=6181 RepID=A0A183P7K6_9TREM)

HSP 1 Score: 128 bits (322), Expect = 1.100e-31
Identity = 96/260 (36.92%), Postives = 131/260 (50.38%), Query Frame = 1
Query:    1 KEFSFSRVFAPGSAQADIYDATTKPLVADLLRGRSGLVFAYGMTNAGKTYTTMGERDAAGEKTGILPRALQDIFEGAAVAEAAGGVRPGVSMSFLEIYNENVYDLLAT---SKSEVR-RTDGSAFGGSFESRRHAVDSPQAAIELLTRGNRNRQVASTKLNEDSSRSHSVCSIEIDAVTLPAGSDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAEPSVLWIVDLAGSERSARTGTDHRSDRQKEANNINLSLTTL 768
            K+F+F  VF  GS Q DIY+   +P+V  +L G +G +FAYG T  GKT+T  G R    E  GI+P +   IF   A+A+A    R  V +S+LEIYNE V DLL     ++ +V+ R D   +  +  S    V SP    +L++ GN+NR   +T +NE SSRSH++ +I I+                                        T      L +VDLAGSER A+TG   +  R +EAN INLSLTTL
Sbjct:   18 KQFTFDLVFGCGSKQTDIYNMVARPIVDKVLEGYNGTIFAYGQTGTGKTFTMEGIRSEP-ELRGIIPNSFAHIF--GAIAKADANTRFLVRVSYLEIYNEEVRDLLGKDQFARLDVKERPDIGVYVKNLSS--FVVHSPNEMDKLMSFGNKNRVTGATNMNEHSSRSHAIYTITIEC-------------------------------SEHSEKNKTLLRQGKLHLVDLAGSERQAKTGATGK--RLQEANKINLSLTTL 239          
BLAST of mRNA_P-wetherbeei_contig11555.3.1 vs. uniprot
Match: UPI001F03A8B5 (kinesin-like protein KIF3A n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03A8B5)

HSP 1 Score: 132 bits (332), Expect = 1.810e-31
Identity = 98/260 (37.69%), Postives = 133/260 (51.15%), Query Frame = 1
Query:    1 KEFSFSRVFAPGSAQADIYDATTKPLVADLLRGRSGLVFAYGMTNAGKTYTTMGERDAAGEKTGILPRALQDIFEGAAVAEAAGGVRPGVSMSFLEIYNENVYDLLA---TSKSEVR-RTDGSAFGGSFESRRHAVDSPQAAIELLTRGNRNRQVASTKLNEDSSRSHSVCSIEIDAVTLPAGSDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAEPSVLWIVDLAGSERSARTGTDHRSDRQKEANNINLSLTTL 768
            K+FSF RVFAPG  Q D+Y+   +P+V  +L G +G +FAYG T  GKT+T  G R    E  GI P +   IF    +A+ AG VR  V +S+LEIYNE+V DLL    T++ EV+ R D   +     +  + V++     + +T GN+NR V +T +NE SSRSH++ +I I+      G D                                      L +VDLAGSER ++TG      R KEA  INLSL TL
Sbjct:   57 KDFSFDRVFAPGCKQVDVYNDAARPIVESVLEGYNGTIFAYGQTGTGKTFTMEGVRSTP-ELRGITPNSFAHIF--GHIAKMAGDVRFLVRVSYLEIYNESVRDLLGKDQTTQLEVKERPDIGVYVKDLSA--YVVNNADDMEKTMTLGNKNRSVGATNMNEHSSRSHAIYTITIERSE--KGVDGQQH-----------------------------VRMGKLHMVDLAGSERQSKTGAT--GQRLKEATKINLSLATL 278          
BLAST of mRNA_P-wetherbeei_contig11555.3.1 vs. uniprot
Match: A0A4S2L6T5_OPIFE (Kinesin-like protein n=1 Tax=Opisthorchis felineus TaxID=147828 RepID=A0A4S2L6T5_OPIFE)

HSP 1 Score: 132 bits (331), Expect = 2.290e-31
Identity = 98/260 (37.69%), Postives = 133/260 (51.15%), Query Frame = 1
Query:    1 KEFSFSRVFAPGSAQADIYDATTKPLVADLLRGRSGLVFAYGMTNAGKTYTTMGERDAAGEKTGILPRALQDIFEGAAVAEAAGGVRPGVSMSFLEIYNENVYDLLA---TSKSEVR-RTDGSAFGGSFESRRHAVDSPQAAIELLTRGNRNRQVASTKLNEDSSRSHSVCSIEIDAVTLPAGSDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAEPSVLWIVDLAGSERSARTGTDHRSDRQKEANNINLSLTTL 768
            K+F+F  VF   S QAD+Y+   +P+V  +L G +G +FAYG T  GKT+T  G R    E  GI+P +   IF   A+A+A    R  V +S+LEIYNE V DLL    T+  +V+ R D   F     S    V SP    +L++ GNRNR  A+T +NE SSRSH++ ++ ++   L  G                                 T      L +VDLAGSER ++TG   +  R +EAN INLSLTTL
Sbjct:   54 KQFTFDFVFDIQSKQADLYNKVARPIVEKVLEGYNGTIFAYGQTGTGKTFTMEGIRSVP-ELRGIIPNSFAHIF--GAIAKADHNTRFLVRVSYLEIYNEEVRDLLGRDQTANLDVKERPDIGVFVKDLSS--FVVHSPNEMDKLMSFGNRNRVTAATNMNEHSSRSHAIYTVTLECSQLMEGGK-------------------------------TLLRQGKLHLVDLAGSERQSKTGATGK--RLQEANKINLSLTTL 275          
BLAST of mRNA_P-wetherbeei_contig11555.3.1 vs. uniprot
Match: A0A5A8D729_CAFRO (Kinesin motor domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D729_CAFRO)

HSP 1 Score: 132 bits (332), Expect = 2.470e-31
Identity = 99/263 (37.64%), Postives = 132/263 (50.19%), Query Frame = 1
Query:    1 KEFSFSRVFAPGSAQADIYDATTKPLVADLLRGRSGLVFAYGMTNAGKTYTTMGERDAAGEKTGILPRALQDIFEGAAVAEA---AGGVRPGVSMSFLEIYNENVYDLL--ATSKSEVRRTDGSAFGGSFES-RRHAVDSPQAAIELLTRGNRNRQVASTKLNEDSSRSHSVCSIEIDA-VTLPAGSDSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAEPSVLWIVDLAGSERSARTGTDHRSDRQKEANNINLSLTTL 768
            ++F F  V     +QA+++D   KP+   +L G +G VFAYG T +GKT+T MG   AAGE  G+LPRAL  IF   A AE    AG +     +S+LEIYNE ++DLL  A S++ +R       G   E   R  V+    A+EL+ RG  NR VA+T +N +SSRSH+V ++ ++A  T P G                                 T        ++DLAGSER  RT       R KEAN IN SLT L
Sbjct:   68 RDFHFDGVIRADQSQAEVFDVVGKPIANAVLEGFNGTVFAYGQTGSGKTHTVMG---AAGELRGLLPRALDHIFSATAEAERSAEAGTLVHAAHVSYLEIYNEKIFDLLDAARSQTSLRIRQDLKTGTLVEGLTREPVEGAAEALELVARGTANRSVAATAMNHESSRSHAVFTLTLEARQTTPDG--------------------------------ITHHRRGNFHLIDLAGSERQTRTHA--AGQRLKEANAINQSLTVL 293          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11555.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDG6_ECTSI2.960e-4541.13Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JEB3_9PHAE1.860e-4440.75Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1... [more]
A0A4D9CZ51_9STRA4.640e-3644.53Kinesin-like protein n=1 Tax=Nannochloropsis salin... [more]
A0A7S1YTC8_9STRA2.270e-3334.68Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
K3WWC5_GLOUD4.200e-3339.69Kinesin-like protein n=1 Tax=Globisporangium ultim... [more]
L1IVX0_GUITC6.430e-3237.04Kinesin-like protein (Fragment) n=1 Tax=Guillardia... [more]
A0A183P7K6_9TREM1.100e-3136.92Kinesin-like protein n=3 Tax=Schistosoma TaxID=618... [more]
UPI001F03A8B51.810e-3137.69kinesin-like protein KIF3A n=1 Tax=Xenia sp. Carne... [more]
A0A4S2L6T5_OPIFE2.290e-3137.69Kinesin-like protein n=1 Tax=Opisthorchis felineus... [more]
A0A5A8D729_CAFRO2.470e-3137.64Kinesin motor domain-containing protein n=4 Tax=Ca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11555contigP-wetherbeei_contig11555:522..1597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LDG6
PFAMsKinesin
Model size771
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.85e-46
EggNOG OGsCOG5059@1|root,KOG4280@2759|Eukaryota
Descriptionmicrotubule motor activity
Cds size771
COG categoryZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185916.5577955-CDS-P-wetherbeei_contig11555:521..9041683185916.5577955-CDS-P-wetherbeei_contig11555:521..904Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11555 522..904 +
1683185916.5661588-CDS-P-wetherbeei_contig11555:1209..15971683185916.5661588-CDS-P-wetherbeei_contig11555:1209..1597Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11555 1210..1597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11555.3.1prot_P-wetherbeei_contig11555.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11555 522..1597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11555.3.1

>prot_P-wetherbeei_contig11555.3.1 ID=prot_P-wetherbeei_contig11555.3.1|Name=mRNA_P-wetherbeei_contig11555.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=257bp
KEFSFSRVFAPGSAQADIYDATTKPLVADLLRGRSGLVFAYGMTNAGKTY
TTMGERDAAGEKTGILPRALQDIFEGAAVAEAAGGVRPGVSMSFLEIYNE
NVYDLLATSKSEVRRTDGSAFGGSFESRRHAVDSPQAAIELLTRGNRNRQ
VASTKLNEDSSRSHSVCSIEIDAVTLPAGSDSADSGGAGGSAGAAGAAGV
AASGAASGAGGATAAEPSVLWIVDLAGSERSARTGTDHRSDRQKEANNIN
LSLTTLW
back to top

mRNA from alignment at P-wetherbeei_contig11555:522..1597+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11555.3.1 ID=mRNA_P-wetherbeei_contig11555.3.1|Name=mRNA_P-wetherbeei_contig11555.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1076bp|location=Sequence derived from alignment at P-wetherbeei_contig11555:522..1597+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGAGTTTTCCTTCTCGCGCGTTTTCGCGCCGGGCAGCGCCCAGGCCGA CATATATGACGCCACGACCAAGCCGTTGGTGGCGGACCTGTTACGGGGTC GTTCCGGACTGGTCTTCGCGTATGGCATGACCAACGCAGGAAAGACGTAC ACGACAATGGGCGAGCGGGACGCCGCTGGTGAAAAGACGGGAATCCTACC GCGGGCGTTGCAGGACATCTTCGAGGGCGCGGCAGTGGCGGAGGCGGCGG GCGGGGTGCGGCCGGGCGTCAGCATGAGCTTCCTGGAAATATACAACGAG AACGTTTACGACCTGCTTGCGACGTCCAAGAGCGAAGTGAGAAGGACGGA CGGGAGCGCCTTCGGTGGAAGTTTTGAGAGCCGGTTTTAATTTGGTCGGT TTCCTCAAAGTTGTCGTGGCGGGAAGGCCAGCTTGGGTTCTGTAGACGCG AAGTTGAAGGCATGCCCCTCGGTCTGCGCTGGCCCGCTCGCCCTTTCCTG CCGGGGTCTTCGTCCTTGGTTCCGCCTTTCTTGAGACAACCAATGGAGGA CATCTCATTTTATTTTCCTCCTTTCCCCTGTTTCCTTCCCGCCAATTCGC GCTGAGCTTCGCAGGACGAATGGCTGCAGACCCGCGAGGCGCTCAAACTG CAGGATCGGCTGGGCAAGATCGAGCCGCGAAATCTGAGCCGCCACGCCGT CGACTCGCCCCAGGCGGCGATCGAGCTGCTGACGCGCGGCAACCGCAACC GGCAGGTCGCCTCAACCAAACTCAACGAGGATTCCAGCCGCTCCCACAGC GTCTGCAGCATCGAGATTGACGCCGTCACGCTGCCCGCCGGCAGCGACAG CGCCGACAGCGGCGGCGCTGGCGGCAGCGCGGGTGCGGCAGGTGCGGCGG GTGTGGCGGCATCGGGTGCGGCGTCGGGCGCGGGGGGTGCGACGGCGGCG GAGCCGTCGGTGCTGTGGATCGTGGACCTAGCAGGGAGCGAGCGGAGCGC GCGCACGGGCACGGACCACCGCAGCGACCGCCAGAAGGAGGCCAACAACA TCAACCTGTCGCTGACCACTCTCTGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11555:522..1597+

>mRNA_P-wetherbeei_contig11555.3.1 ID=mRNA_P-wetherbeei_contig11555.3.1|Name=mRNA_P-wetherbeei_contig11555.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=771bp|location=Sequence derived from alignment at P-wetherbeei_contig11555:522..1597+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGAGTTTTCCTTCTCGCGCGTTTTCGCGCCGGGCAGCGCCCAGGCCGA
CATATATGACGCCACGACCAAGCCGTTGGTGGCGGACCTGTTACGGGGTC
GTTCCGGACTGGTCTTCGCGTATGGCATGACCAACGCAGGAAAGACGTAC
ACGACAATGGGCGAGCGGGACGCCGCTGGTGAAAAGACGGGAATCCTACC
GCGGGCGTTGCAGGACATCTTCGAGGGCGCGGCAGTGGCGGAGGCGGCGG
GCGGGGTGCGGCCGGGCGTCAGCATGAGCTTCCTGGAAATATACAACGAG
AACGTTTACGACCTGCTTGCGACGTCCAAGAGCGAAGTGAGAAGGACGGA
CGGGAGCGCCTTCGGTGGAAGTTTTGAGAGCCGCCGCCACGCCGTCGACT
CGCCCCAGGCGGCGATCGAGCTGCTGACGCGCGGCAACCGCAACCGGCAG
GTCGCCTCAACCAAACTCAACGAGGATTCCAGCCGCTCCCACAGCGTCTG
CAGCATCGAGATTGACGCCGTCACGCTGCCCGCCGGCAGCGACAGCGCCG
ACAGCGGCGGCGCTGGCGGCAGCGCGGGTGCGGCAGGTGCGGCGGGTGTG
GCGGCATCGGGTGCGGCGTCGGGCGCGGGGGGTGCGACGGCGGCGGAGCC
GTCGGTGCTGTGGATCGTGGACCTAGCAGGGAGCGAGCGGAGCGCGCGCA
CGGGCACGGACCACCGCAGCGACCGCCAGAAGGAGGCCAACAACATCAAC
CTGTCGCTGACCACTCTCTGG
back to top