mRNA_P-wetherbeei_contig11552.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11552.1.1
Unique NamemRNA_P-wetherbeei_contig11552.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11552.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11552contigP-wetherbeei_contig11552:699..1508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size810
Hectar predicted targeting categorysignal peptide
Exons1
Cds size792
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185916.5053065-UTR-P-wetherbeei_contig11552:698..7161683185916.5053065-UTR-P-wetherbeei_contig11552:698..716Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11552 699..716 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185916.513088-CDS-P-wetherbeei_contig11552:716..15081683185916.513088-CDS-P-wetherbeei_contig11552:716..1508Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11552 717..1508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11552.1.1prot_P-wetherbeei_contig11552.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11552 717..1508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11552.1.1

>prot_P-wetherbeei_contig11552.1.1 ID=prot_P-wetherbeei_contig11552.1.1|Name=mRNA_P-wetherbeei_contig11552.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=264bp
MRGVGMMAQFGLAEGLAGGAAGIAGGVLGNSLPIDNRGAKIAIGAAAGAA
TMAGIHAVAGGPTSVPVTLLLGSLSGLTGAVGGSGRAQVRDSMTGGSLTG
LAVGLATHNPFLSVTAGAAAALGGQAENKVVRVATSAGVGAALGAVEAVL
THNSVGLSTAITASVAAVGSAVGPVVMQASRNLTKSGSDKVSGALTGWVE
KQNDATLIAAGAVPGILSGGLLGSSLGALHPSLLAPGIAAGGLVGGALGA
HKVDKMLHAKEKP*
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mRNA from alignment at P-wetherbeei_contig11552:699..1508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11552.1.1 ID=mRNA_P-wetherbeei_contig11552.1.1|Name=mRNA_P-wetherbeei_contig11552.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=810bp|location=Sequence derived from alignment at P-wetherbeei_contig11552:699..1508+ (Phaeothamnion wetherbeei SAG_119_79)
GGCTGTCTGCGCGGCGGGATGCGCGGTGTGGGGATGATGGCGCAGTTTGG
GCTGGCCGAGGGCCTTGCAGGGGGTGCGGCGGGTATCGCCGGCGGCGTAC
TGGGGAACTCTCTGCCGATTGACAACCGGGGCGCCAAGATCGCTATCGGC
GCTGCAGCAGGTGCCGCCACGATGGCGGGGATTCACGCGGTGGCCGGCGG
CCCGACCAGCGTCCCGGTGACGCTTCTGCTGGGGAGCCTCTCGGGTCTGA
CGGGTGCGGTGGGCGGTTCCGGGCGCGCCCAGGTGCGCGATAGCATGACG
GGCGGCAGTCTCACGGGGCTGGCTGTGGGCCTGGCGACGCATAATCCATT
CCTCTCCGTCACCGCGGGCGCGGCAGCCGCTCTCGGCGGGCAGGCCGAGA
ACAAGGTGGTTCGGGTGGCGACTTCGGCCGGCGTGGGGGCCGCGCTGGGG
GCTGTCGAGGCAGTGTTGACGCACAATTCTGTCGGCCTTTCGACCGCCAT
TACGGCTTCTGTAGCGGCTGTTGGATCTGCAGTGGGCCCGGTGGTTATGC
AAGCTTCGCGCAATCTCACGAAGAGCGGTTCGGACAAGGTTTCTGGCGCC
CTTACCGGCTGGGTCGAGAAGCAGAACGACGCGACTCTCATCGCCGCGGG
CGCGGTACCGGGCATTCTAAGCGGTGGGCTCCTGGGCTCCTCGCTGGGCG
CTCTTCACCCCTCCCTACTCGCACCTGGAATCGCGGCCGGCGGCCTGGTC
GGCGGCGCGCTGGGGGCTCACAAAGTTGACAAGATGCTACATGCCAAGGA
GAAACCATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11552:699..1508+

>mRNA_P-wetherbeei_contig11552.1.1 ID=mRNA_P-wetherbeei_contig11552.1.1|Name=mRNA_P-wetherbeei_contig11552.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=792bp|location=Sequence derived from alignment at P-wetherbeei_contig11552:699..1508+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGGTGTGGGGATGATGGCGCAGTTTGGGCTGGCCGAGGGCCTTGC
AGGGGGTGCGGCGGGTATCGCCGGCGGCGTACTGGGGAACTCTCTGCCGA
TTGACAACCGGGGCGCCAAGATCGCTATCGGCGCTGCAGCAGGTGCCGCC
ACGATGGCGGGGATTCACGCGGTGGCCGGCGGCCCGACCAGCGTCCCGGT
GACGCTTCTGCTGGGGAGCCTCTCGGGTCTGACGGGTGCGGTGGGCGGTT
CCGGGCGCGCCCAGGTGCGCGATAGCATGACGGGCGGCAGTCTCACGGGG
CTGGCTGTGGGCCTGGCGACGCATAATCCATTCCTCTCCGTCACCGCGGG
CGCGGCAGCCGCTCTCGGCGGGCAGGCCGAGAACAAGGTGGTTCGGGTGG
CGACTTCGGCCGGCGTGGGGGCCGCGCTGGGGGCTGTCGAGGCAGTGTTG
ACGCACAATTCTGTCGGCCTTTCGACCGCCATTACGGCTTCTGTAGCGGC
TGTTGGATCTGCAGTGGGCCCGGTGGTTATGCAAGCTTCGCGCAATCTCA
CGAAGAGCGGTTCGGACAAGGTTTCTGGCGCCCTTACCGGCTGGGTCGAG
AAGCAGAACGACGCGACTCTCATCGCCGCGGGCGCGGTACCGGGCATTCT
AAGCGGTGGGCTCCTGGGCTCCTCGCTGGGCGCTCTTCACCCCTCCCTAC
TCGCACCTGGAATCGCGGCCGGCGGCCTGGTCGGCGGCGCGCTGGGGGCT
CACAAAGTTGACAAGATGCTACATGCCAAGGAGAAACCATGA
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