mRNA_P-wetherbeei_contig11550.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11550.1.1
Unique NamemRNA_P-wetherbeei_contig11550.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11550.1.1 vs. uniprot
Match: A0A6H5L901_9PHAE (LsmAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L901_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 3.560e-41
Identity = 106/259 (40.93%), Postives = 142/259 (54.83%), Query Frame = 1
Query:  124 AYQLGCRERLLGAFKSMIGERVSVQLSEGTALDGVLHLLTPF--LIDGAED--FQVVLKAVRSTQTRDDASDGG---LDENGASYHFSLSRVVHIRAEHFPMVQRKQ-PAGFATDADISGSV----QAGVERELQMADQSWVTPAKPMPTPPXXXXXXXXXXXXXXXXXXXXXGGWDQFEANKRLFNVNSTFDENKYTTQLDTSKLTPQEVRKAEQMAREIEGKASSNPHLREERNQIVGGDLDGDEEDRYSGVLGGSG 864
            +Y++ CR+R +   K+M+GER  +  + G   +GV H+LTP      GA+   ++V+++A +  Q   D S+GG   +D  G +   S   +V I  + FPM +  Q P G  TD+DI G      Q GVER LQ  D SWV  +  M  P                      G WDQF AN++LFNV STFDEN YTT LDT  L+  ++  AE+MA EIEGK SSN H+REERN +   D    EE+R+SGVLG  G
Sbjct:   93 SYKMACRDRWMNVTKTMMGERAEITTTSGCVYEGVFHVLTPGDDPRPGAKRGMYRVIMRAAK-VQGATDQSNGGQSKIDSRGGTLMLSGDDIVSIAVKRFPMQRSAQRPKGLGTDSDIGGRAGGGGQLGVERRLQAVDTSWVESSSNMSIP---------------QSGGGGAGKWDQFAANEKLFNVTSTFDENLYTTPLDTGSLSRAQMAHAERMAAEIEGKTSSNIHMREERNMLTEQDKAMGEEERFSGVLGTGG 335          
BLAST of mRNA_P-wetherbeei_contig11550.1.1 vs. uniprot
Match: D7FVW6_ECTSI (LsmAD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW6_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 7.580e-39
Identity = 107/279 (38.35%), Postives = 142/279 (50.90%), Query Frame = 1
Query:  103 ASMPQTRAYQLGCRERLLGAFKSMIGERVSVQLSEGTALDGVLHLLTPFLIDGAED--------FQVVLKAVRSTQTRDDASDGG---LDENGASYHFSLSRVVHIRAEHFPMVQRKQ-PAGFATDADISGSV----QAGVERELQMADQSWVTPAKPMPTPPXXXXXXXXXXXXXXXXXXXXXGGWDQFEANKR---------LFNVNSTFDENKYTTQLDTSKLTPQEVRKAEQMAREIEGKASSNPHLREERNQIVGGDLDGDEEDRYSGVLGGSG 864
            A  P +  Y++ CR+R +   K+M+GER  +  + G   +GV H+LTP    G E         ++V+++A +  Q   D S+GG   +D  G +   S   +V I  + FPM    Q P G  TD+DI G      Q GVER+LQ  D SWV  +  M  P                      G WDQF AN++         LFNV STFDEN YTT LDT  L+  ++  AE+MA EIEGK S N H+REERN +   D    EE+R+SGVLG  G
Sbjct:   79 AVAPGSDGYKMACRDRWMNVTKTMMGERAEITTTSGCVYEGVFHVLTP----GEEPRPGAKRGMYRVIMRAAK-VQGATDQSNGGQSKIDSRGGTLMLSGDDIVSIAVKRFPMQHSAQRPKGLGTDSDIGGRAGGGSQLGVERKLQAVDTSWVESSSNMSIP---------------QSGGGGAGKWDQFAANEKCGEVSAMCGLFNVTSTFDENLYTTPLDTGSLSRAQMAHAERMAAEIEGKTSGNIHMREERNMLTEQDKAMGEEERFSGVLGTGG 337          
BLAST of mRNA_P-wetherbeei_contig11550.1.1 vs. uniprot
Match: A0A7S1TU51_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU51_9STRA)

HSP 1 Score: 135 bits (341), Expect = 8.840e-31
Identity = 93/251 (37.05%), Postives = 129/251 (51.39%), Query Frame = 1
Query:  103 ASMPQTRAYQLGCRERLLGAFKSMIGERVSVQLSEGTALDGVLHLLTPFLIDGAEDFQVVLKAVRSTQTRDDASDGGLDENGASYHFSLSRVVHIRAEHFPMVQRKQPAG-FATDADISGSVQAGVERELQMADQSWVTPAKPMPTPPXXXXXXXXXXXXXXXXXXXXXGGWDQFEANKRLFNVNSTFDENKYTTQLDTSKLTPQEVRKAEQMAREIEGKASSNPHLREERNQIVGGDLDGDEEDRYSGVL 852
            A+ P  R   L  R+R +     ++G+ V+ ++S+GT  +GV H   P     A+D +V ++A R       A DG +   G++       VVHI      + +    AG F+TD DISG   A  ER LQ  D SWVT                              G WDQFEAN+RL+ V +TFDEN YTT+LD  K T  ++R+AE++AREIEGK SSN H+ EER   +   +   EE+R+SGV+
Sbjct:   38 AAAPSQRTAIL-LRDRFIHTLTKLVGKSVTARMSDGTQYEGVFHSAAPSAT--ADDHKVAIRAARLVAGT--AKDGFVP--GSTALLQWRNVVHIACLSVDLRRDAPSAGSFSTDTDISGGANATGERRLQAVDASWVT-------------------GEVDGNMAGRAGKWDQFEANERLYGVKNTFDENLYTTRLDKGKFTETQMREAERLAREIEGKKSSNVHMAEERGHKIDDTVT--EEERFSGVI 260          
BLAST of mRNA_P-wetherbeei_contig11550.1.1 vs. uniprot
Match: A0A1Z5KM69_FISSO (LsmAD domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KM69_FISSO)

HSP 1 Score: 134 bits (338), Expect = 2.010e-30
Identity = 92/251 (36.65%), Postives = 129/251 (51.39%), Query Frame = 1
Query:  142 RERLLGAFKSMIGERVSVQLSEGTALDGVLHLLTPF-LIDGAEDFQVVLKAVRSTQTRDDASDGGLDENGASYHFSLSRVVHIRAEHFPM--------VQRKQPAG-FATDADISGSVQAGVERELQMADQSWVTPAKPMPTP----PXXXXXXXXXXXXXXXXXXXXXGGWDQFEANKRLFNVNSTFDENKYTTQLDTSKLTPQEVRKAEQMAREIEGKASSNPHLREERNQIVGGDLDGDEEDRYSGVL 852
            RER L    +M+G++V + L +G    G+ H  TPF  +   +  + VLKAV   Q   +   G   + G +    +S+VVH+  +   M        V    P G F TD +ISG   +G  + L  A  +W TP    P+                           GGWDQF+AN++LFNV +++DEN YTT+LD S +  +++  AE++AREIEG ASSNPH+ EER   + GD D  EED YSGVL
Sbjct:   60 RERFLHLLLNMVGQKVQMTLVDGAVYGGIFHTATPFPSLPADQRHKFVLKAVSILQAPKEQHAGV--KAGQTLVVDMSQVVHLHLKSIRMDALTNNNNVTSSNPNGSFQTDTEISGK-NSGGNKGLVAAGSAWTTPIASPPSSGNGNSRADALLGNAPRPVQAGLQGSIGGWDQFKANEQLFNVKASYDENLYTTELDKSTMDQEKIEHAEKLAREIEGAASSNPHIAEERGHKIQGDYD--EEDLYSGVL 305          
BLAST of mRNA_P-wetherbeei_contig11550.1.1 vs. uniprot
Match: B7FW14_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FW14_PHATC)

HSP 1 Score: 132 bits (332), Expect = 1.290e-29
Identity = 101/280 (36.07%), Postives = 139/280 (49.64%), Query Frame = 1
Query:   43 KVIPSRRNMAGGS-PPHPGGKASMPQTRAYQLGCRERLLGAFKSMIGERVSVQLSEGTALDGVLHLLTPFL-IDGAEDFQVVLKA---VRSTQTRDDASDGGLDENGASYHFSLSRVVHIRAEHFPMVQRKQPAGFA----TDADISGSVQAGVERELQMADQSWVTP-AKPMPTPPXXXXXXXXXXXXXXXXXXXXXGGWDQFEANKRLFNVNSTFDENKYTTQLDTSKLTPQEVRKAEQMAREIEGKASSNPHLREERNQIVGGDLDGDEEDRYSGVL 852
            K +PS     GG  P  P  KA      A  +  RER LG   +++G +V V L +G  L+G+ H  T F  ID     Q VLK    V++T     A+     +  A+    +S+VV +  +   + Q + P+       TD +IS       +  L  A  +W TP AK                           GGWDQF ANK LFNV ++FDEN+YTT LD + +  Q++R+AE++A EIE   S+N H+ EERNQ+V GD D  EEDRYSGV+
Sbjct:   43 KAVPSAPPGLGGPRPTAPSTKAPSEAETATFVALRERYLGLCLNLVGHKVVVHLRDGRQLEGIFHTATSFASIDAKLRNQYVLKGTQTVKATTADSKANTVTPIQPNATVVLDMSKVVSLHCKSIRL-QHQVPSSSVDNSFTDTEISKGAARTNDAGLVAAGAAWTTPTAKAGGGIDTPVSTAGTVTPRSTTGLKASIGGWDQFRANKELFNVTASFDENQYTTVLDKNTVDAQKLREAEKLAAEIEKSVSTNWHVAEERNQVVQGDFD--EEDRYSGVI 319          
BLAST of mRNA_P-wetherbeei_contig11550.1.1 vs. uniprot
Match: A0A1W0ACN4_9STRA (LsmAD domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ACN4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.910e-25
Identity = 91/247 (36.84%), Postives = 126/247 (51.01%), Query Frame = 1
Query:  142 RERLLGAFKSMIGERVSVQLSEGTALDGVLHLLTPFLIDGAEDFQVVLKAVRSTQTRDDASDGGLDENGASYHFSLSRVVHIRAEHFPMVQRKQPAG---------FATDADISGSVQAGV-ERELQMADQSWVTPAKPMPTPPXXXXXXXXXXXXXXXXXXXXXGGWDQFEANKRLFNVNSTFDENKYTTQLDTSKLTPQEVRKAEQMAREIEGKASSNPHLREERNQIVGGDLDGDEEDRYSGVL 852
            R R L  F+  +G  V V L + +   GVLH + P      +DF VV+K   +TQ   +      + NG+++      + HI +E      ++  A          F TD DIS +++A +  RELQ A  SW+ P+                            G W+QFE N++LF V STFDEN YTT+L+ SK+TP+++R AEQMAREIE + SSN HL EERN     D + DEE RYS V+
Sbjct:   41 RHRALYIFRFYVGRTVQVTLRDKSKYTGVLHCIDP------DDFTVVVK---NTQRLTEDPTKPFN-NGSTFVIQHFLLAHISSEGLSDYHQETGATQRLPYNSGTFQTDTDISNNLKAHLFGRELQTAS-SWLDPS----------------LDTGELERGNNKGNWNQFEVNEKLFGVTSTFDENLYTTKLEKSKITPEQIRAAEQMAREIESQTSSNFHLMEERNLSAERD-EIDEETRYSSVV 259          
BLAST of mRNA_P-wetherbeei_contig11550.1.1 vs. uniprot
Match: A0A662XG07_9STRA (LsmAD domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XG07_9STRA)

HSP 1 Score: 118 bits (295), Expect = 7.600e-25
Identity = 99/264 (37.50%), Postives = 135/264 (51.14%), Query Frame = 1
Query:  103 ASMPQTRAYQLGCRERLLGAFKSMIGERVSVQL-SEGTALDGVLHLLTPFLIDGAEDFQVVLKAVRSTQTRDDASDGGLDENGASYHFSLSRVVHIRAEHFPMVQ--------RKQPAGFATDADISGSVQAGVE-RELQMADQSWVTPAKPMPTPPXXXXXXXXXXXXXXXXXXXXXGGWDQFEANKRLFNVNSTFDENKYTTQLDTSKLTPQEVRKAEQMAREIEGKASS-NPHLREERNQIVGG----DLDGDEEDRYSGV 849
            AS P T A+Q   R R L AF+ ++G+ V +QL S G    GVL  + P      +DF +VLK+ +      +A  G   E+G++  F  S+V H+ A+                   GF TD +ISG     +  RELQ A  SW+ PA                             GW+QFEAN++LF V STFDEN YTT+LD SK++ ++ R AE++A+EIE +AS+ N HL+EER Q   G    + D DEE RYS V
Sbjct:   83 ASPPPTHAHQRLLRHRALFAFRFLVGKAVELQLASSGARYAGVLDCVDP------DDFSMVLKSAKQLSAGAEA--GEPFESGSTVIFQRSQVAHLVADGSVNYTDGVVGAGGASVAGGFRTDTEISGRQGDHLYGRELQTAT-SWLDPAL------DSGELEDASSNGRRHSKNQGKAGWNQFEANEKLFGVVSTFDENIYTTKLDKSKISTEQSRAAERLAQEIERQASAGNFHLQEERGQTARGGKHVNNDLDEEARYSSV 331          
BLAST of mRNA_P-wetherbeei_contig11550.1.1 vs. uniprot
Match: A0A7R9UGP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGP2_9STRA)

HSP 1 Score: 112 bits (281), Expect = 7.780e-25
Identity = 90/291 (30.93%), Postives = 141/291 (48.45%), Query Frame = 1
Query:   10 LCCRTARGARAKVIPSRRNMAGGSPPH-------PGGKASMP-QTRAYQLGCRERLLGAFKSMIGERVSVQLSEGTALDGVLHLLTPFLIDGAEDFQVVLKAVRSTQTRDDASDGGLDENGASYHFSLSRVVHIRAEHFPMVQRKQPAG--FATDADISGSV-QAGVERELQMADQSWVTPAKPMPTPPXXXXXXXXXXXXXXXXXXXXXGGWDQFEANKRLFNVNSTFDENKYTTQLDTSKLTPQEVRKAEQMAREIEGKASSNPHLREERNQIVGGDLDGDEEDRYSGV 849
            +  + A+GA AK  P       G PP        P G    P   +   L  R+R L      +G+ V  ++++GT  +GV H+ T      A++ Q+ ++A R T    +  +G +  + A   +     V+  +     ++R  PA   F+TD+DISG   +   +R L   D SW+                               G WDQFE N+RL+ V +T+DEN YTT L+ + LTP+++ +A+++AR+IEGK SSNPH+ EER   +  +L   EE+R+SGV
Sbjct:    1 MAAKMAKGAWAKGPPK----LNGEPPKAVAVDAPPAGATEAPAMPKQNGLLARDRFLHTLVKFVGKPVIAKMADGTVYEGVWHVATAS--SPADEHQLAIRAARITAG--EVPEGFVPGSTALVQWRDVLCVNCLSVD---LRRDAPAAGAFSTDSDISGGAGRVAGDRALHSVDPSWI-------------------GANVEGGLSGKAGDWDQFEVNERLYGVQNTYDENLYTTALNKADLTPEQLTEADRIARQIEGKTSSNPHIAEERGHELRSNLT--EEERFSGV 259          
BLAST of mRNA_P-wetherbeei_contig11550.1.1 vs. uniprot
Match: K3WV04_GLOUD (LsmAD domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV04_GLOUD)

HSP 1 Score: 112 bits (281), Expect = 9.480e-24
Identity = 89/254 (35.04%), Postives = 132/254 (51.97%), Query Frame = 1
Query:  127 YQLGCRERLLGAFKSMIGERVSVQLSEGTALDGVLHLLTPFLIDGAEDFQVVLKAVRSTQTRDDASDGGLDENGASYHFSLSRVVHIRAEHFPMVQRKQPA-----------GFATDADISGSVQAGV-ERELQMADQSWVTPAKPMPTPPXXXXXXXXXXXXXXXXXXXXXGGWDQFEANKRLFNVNSTFDENKYTTQLDTSKLTPQEVRKAEQMAREIEGKASSNPHLREER-NQIVGGDLDGDEEDRYSGV 849
            +Q   R R L AF+  +G+ V VQL + +   GVL  + P      +DF +VLK      TR  + +G   ++G++  F   ++VH+  +   +V   + A           GF TD +ISG     +  RELQ A+ SW+ P   +                          GW+QFEAN++LF V S++DEN YTT+LD SK++ Q+ R+AE++A EIE + S+N HL+EER +Q    D + DEE RYS V
Sbjct:   82 HQRVLRHRALFAFRFFVGKAVEVQLDDASVYTGVLDCVDP------DDFSIVLK-----NTRRKSENGEAFQSGSTVIFKRQQIVHLSVDG--VVNYNEGALGAAAVSAAAGGFRTDTEISGRHHDHLFGRELQSAN-SWLDPKLDI-------------GELEDPRRRSSKSGWNQFEANEKLFGVVSSYDENIYTTKLDKSKISTQQSREAERIALEIERQTSTNFHLQEERGHQSAHHDDNLDEEARYSSV 308          
BLAST of mRNA_P-wetherbeei_contig11550.1.1 vs. uniprot
Match: A0A6S8VWH1_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8VWH1_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.810e-23
Identity = 90/269 (33.46%), Postives = 128/269 (47.58%), Query Frame = 1
Query:  142 RERLLGAFKSMIGERVSVQLSEGTALDGVLHLLTPFLIDGAE---DFQVVLKAVRSTQTRDDASDGGLDENG--ASYHFSLSRVVHIRAEHFPMVQRKQPAG-------------FATDADISGSVQAGVERELQMADQSWVTPA--------------KPMPTPPXXXXXXXXXXXXXXXXXXXXXGGWDQFEANKRLFNVNSTFDENKYTTQLDTSKLTPQEVRKAEQMAREIEGKASSNPHLREERNQIVGGDLDGDEEDRYSGVL 852
            RER L    +++G+ VS+ L++G+ ++GV H  TPF + G       + V+KA R T+  +D    G +E G   S       V  +  +   + Q  + A              F TD DIS S  A V  +L MA  SWVT                K   +                       G WDQF+AN+  F V ++FDE+ YTT LD + +  ++  +A +MAREIEG+A++N HL EER Q + GD D  EED+YSGVL
Sbjct:   58 RERFLHLTLNLLGQTVSLTLTDGSEIEGVFHTFTPFQMSGKNKDRSNKYVIKAARITKQGED----GKNEVGPAGSLIVPAEEVSQLLVKSIRLEQANRSAAAAGNAPSNSNGDAFVTDTDIS-SGGAAVSDDLVMASSSWVTSEGGNGGGLDSGGLSNKADSSMGGRKGMFGTKTAGKDDSMRGNIGEWDQFKANEAQFGVKASFDESLYTTSLDKNSVDRKQKLEAARMAREIEGQATTNMHLAEERGQAIEGDYD--EEDKYSGVL 319          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11550.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L901_9PHAE3.560e-4140.93LsmAD domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FVW6_ECTSI7.580e-3938.35LsmAD domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S1TU51_9STRA8.840e-3137.05Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1Z5KM69_FISSO2.010e-3036.65LsmAD domain-containing protein n=2 Tax=Fistulifer... [more]
B7FW14_PHATC1.290e-2936.07Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1W0ACN4_9STRA2.910e-2536.84LsmAD domain-containing protein n=1 Tax=Thraustoth... [more]
A0A662XG07_9STRA7.600e-2537.50LsmAD domain-containing protein n=1 Tax=Nothophyto... [more]
A0A7R9UGP2_9STRA7.780e-2530.93Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
K3WV04_GLOUD9.480e-2435.04LsmAD domain-containing protein n=1 Tax=Globispora... [more]
A0A6S8VWH1_9STRA2.810e-2333.46Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11550contigP-wetherbeei_contig11550:2..1485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FVW6
Preferred nameATXN2
PFAMsLsmAD,PAM2,SM-ATX
Model size1310
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC02888,RC02997
KEGG koko:K15397
KEGG ReactionR09419,R10825
KEGG Pathwayko00062,ko01110,map00062,map01110
KEGG ModuleM00415
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000902,GO:0000910,GO:0001654,GO:0001709,GO:0001745,GO:0001751,GO:0001754,GO:0002090,GO:0002091,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005102,GO:0005154,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005794,GO:0005802,GO:0005829,GO:0005844,GO:0006139,GO:0006259,GO:0006403,GO:0006417,GO:0006725,GO:0006807,GO:0006810,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007059,GO:0007088,GO:0007143,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007548,GO:0007610,GO:0007611,GO:0007612,GO:0007613,GO:0007616,GO:0007622,GO:0007623,GO:0007626,GO:0008022,GO:0008064,GO:0008104,GO:0008150,GO:0008152,GO:0008284,GO:0008406,GO:0008585,GO:0009266,GO:0009581,GO:0009582,GO:0009605,GO:0009628,GO:0009653,GO:0009794,GO:0009887,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009994,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010564,GO:0010603,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010720,GO:0010824,GO:0010826,GO:0010941,GO:0010942,GO:0010948,GO:0010968,GO:0012505,GO:0015931,GO:0016020,GO:0016043,GO:0016048,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0019953,GO:0021533,GO:0021549,GO:0021575,GO:0021587,GO:0021680,GO:0021692,GO:0021694,GO:0021695,GO:0021696,GO:0021697,GO:0021702,GO:0021953,GO:0022008,GO:0022037,GO:0022402,GO:0022412,GO:0022414,GO:0022416,GO:0022607,GO:0022613,GO:0022618,GO:0030030,GO:0030100,GO:0030154,GO:0030182,GO:0030716,GO:0030832,GO:0030833,GO:0030902,GO:0030953,GO:0031110,GO:0031111,GO:0031113,GO:0031115,GO:0031122,GO:0031175,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031333,GO:0031440,GO:0031441,GO:0031644,GO:0031974,GO:0031981,GO:0031984,GO:0032092,GO:0032268,GO:0032270,GO:0032271,GO:0032272,GO:0032465,GO:0032467,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032879,GO:0032880,GO:0032886,GO:0032887,GO:0032888,GO:0032954,GO:0032956,GO:0032970,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033206,GO:0033365,GO:0033962,GO:0034063,GO:0034248,GO:0034250,GO:0034613,GO:0034622,GO:0034641,GO:0035770,GO:0036464,GO:0040001,GO:0040008,GO:0040014,GO:0040015,GO:0040019,GO:0040020,GO:0040038,GO:0042051,GO:0042127,GO:0042461,GO:0042462,GO:0042592,GO:0043007,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043393,GO:0043570,GO:0043900,GO:0043902,GO:0043933,GO:0044057,GO:0044085,GO:0044087,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044380,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045137,GO:0045165,GO:0045475,GO:0045595,GO:0045597,GO:0045727,GO:0045786,GO:0045787,GO:0045806,GO:0045836,GO:0045840,GO:0045926,GO:0045931,GO:0045934,GO:0045977,GO:0045995,GO:0046483,GO:0046530,GO:0046545,GO:0046605,GO:0046606,GO:0046660,GO:0046958,GO:0046959,GO:0048232,GO:0048259,GO:0048261,GO:0048285,GO:0048468,GO:0048471,GO:0048477,GO:0048511,GO:0048512,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048592,GO:0048599,GO:0048608,GO:0048609,GO:0048638,GO:0048640,GO:0048646,GO:0048666,GO:0048699,GO:0048731,GO:0048749,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048872,GO:0050657,GO:0050658,GO:0050684,GO:0050686,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050803,GO:0050807,GO:0050877,GO:0050890,GO:0050896,GO:0050905,GO:0051049,GO:0051051,GO:0051093,GO:0051094,GO:0051098,GO:0051099,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051235,GO:0051236,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051276,GO:0051293,GO:0051301,GO:0051302,GO:0051321,GO:0051445,GO:0051446,GO:0051493,GO:0051494,GO:0051495,GO:0051606,GO:0051640,GO:0051641,GO:0051642,GO:0051649,GO:0051651,GO:0051653,GO:0051656,GO:0051657,GO:0051661,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051823,GO:0051983,GO:0051984,GO:0060147,GO:0060149,GO:0060236,GO:0060255,GO:0060281,GO:0060282,GO:0060284,GO:0060322,GO:0060341,GO:0060627,GO:0060631,GO:0060903,GO:0060964,GO:0060965,GO:0060966,GO:0060967,GO:0060968,GO:0060969,GO:0061458,GO:0061640,GO:0061842,GO:0062033,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070507,GO:0070727,GO:0070851,GO:0070925,GO:0071539,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072698,GO:0080090,GO:0080154,GO:0090066,GO:0090068,GO:0090169,GO:0090224,GO:0090304,GO:0090328,GO:0090596,GO:0097159,GO:0097167,GO:0097435,GO:0098791,GO:0110028,GO:0110053,GO:0120036,GO:0120039,GO:0140013,GO:1900363,GO:1900364,GO:1901214,GO:1901216,GO:1901360,GO:1901363,GO:1902115,GO:1902412,GO:1902846,GO:1902850,GO:1902903,GO:1902904,GO:1903046,GO:1903047,GO:1903311,GO:1903312,GO:1903436,GO:1903438,GO:1903490,GO:1903827,GO:1903828,GO:1904779,GO:1904780,GO:1905508,GO:1905516,GO:1905833,GO:1905879,GO:1905881,GO:1905936,GO:1905938,GO:1905939,GO:1905941,GO:1990904,GO:2000026,GO:2000112,GO:2000194,GO:2000196,GO:2000241,GO:2000243,GO:2001252
Exons2
Evalue1.24e-39
EggNOG OGsCOG5180@1|root,KOG2375@2759|Eukaryota
Ec32 ortholog descriptionLsmAD domain
Ec32 orthologEc-01_002400.1
EC2.3.1.199
Descriptionregulation of cytoplasmic mRNA processing body assembly
Cds size1308
COG categoryA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185916.467097-CDS-P-wetherbeei_contig11550:3..12351683185916.467097-CDS-P-wetherbeei_contig11550:3..1235Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11550 4..1235 -
1683185916.4788942-CDS-P-wetherbeei_contig11550:1409..14851683185916.4788942-CDS-P-wetherbeei_contig11550:1409..1485Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11550 1410..1485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11550.1.1prot_P-wetherbeei_contig11550.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11550 4..1485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11550.1.1

>prot_P-wetherbeei_contig11550.1.1 ID=prot_P-wetherbeei_contig11550.1.1|Name=mRNA_P-wetherbeei_contig11550.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=436bp
GAPLCCRTARGARAKVIPSRRNMAGGSPPHPGGKASMPQTRAYQLGCRER
LLGAFKSMIGERVSVQLSEGTALDGVLHLLTPFLIDGAEDFQVVLKAVRS
TQTRDDASDGGLDENGASYHFSLSRVVHIRAEHFPMVQRKQPAGFATDAD
ISGSVQAGVERELQMADQSWVTPAKPMPTPPSSSSRRGGGRGGGGGGGGG
AAGGWDQFEANKRLFNVNSTFDENKYTTQLDTSKLTPQEVRKAEQMAREI
EGKASSNPHLREERNQIVGGDLDGDEEDRYSGVLGGSGATFADMPPPQSG
SGIGGGGGGNSRSGPRQDRRPAALTGGSGGADLGQRTGSPAGSARASPRG
PQTVYKPPALRSREAAEQQLQGVLGLAGGGGGSSGTAVGNGGVTFAAVAA
GLASTGGGERQPPQGTPGPAKGAGVPPAGAPERAAA
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mRNA from alignment at P-wetherbeei_contig11550:2..1485-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11550.1.1 ID=mRNA_P-wetherbeei_contig11550.1.1|Name=mRNA_P-wetherbeei_contig11550.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1484bp|location=Sequence derived from alignment at P-wetherbeei_contig11550:2..1485- (Phaeothamnion wetherbeei SAG_119_79)
GGTGCTCCTTTGTGCTGCCGGACGGCACGGGGAGCGAGGGCAAAGGTCAT TCCGAGCCGGCGAAATATGGCGGGAGGTATGTTTTTCTTCCTTTTGCTCT TATAAACTCCTCCTTTTCAAAGCCTCGGCGGCATTGAATTGCGGCTTTGC TGTCTGTGCGCAGTACCCTTTCCTGCAACAGTTCTCACCCTCCATTTTCG TTTTCCTTCTTCTCTCTTGCCGACGAAACGCGGATCCTGGTGCCCCTCAG GCTCTCCTCCCCACCCCGGTGGCAAAGCGTCGATGCCGCAGACCCGGGCG TACCAGTTAGGATGTCGGGAGCGTCTCTTGGGAGCTTTCAAAAGCATGAT TGGCGAGCGCGTTAGCGTACAGCTGTCAGAGGGCACGGCACTCGACGGCG TTTTGCACCTGCTGACGCCATTTCTCATAGACGGCGCCGAGGACTTCCAG GTGGTGCTTAAGGCGGTTCGGTCCACGCAAACGCGCGATGACGCCAGCGA CGGCGGTTTGGATGAGAACGGGGCCTCGTACCACTTCTCCCTCAGCCGCG TTGTGCACATTCGCGCCGAGCACTTCCCCATGGTGCAGCGGAAGCAGCCG GCGGGCTTCGCCACCGACGCAGACATCAGCGGCTCTGTGCAGGCCGGCGT TGAGCGCGAGCTGCAGATGGCAGACCAGTCCTGGGTAACTCCTGCCAAGC CCATGCCGACACCGCCGAGCAGCAGCAGCCGCCGCGGCGGCGGGCGCGGC GGCGGCGGTGGCGGCGGCGGCGGCGCCGCCGGCGGCTGGGACCAGTTCGA GGCCAACAAGCGTCTGTTCAACGTGAATTCGACGTTCGACGAGAACAAGT ACACGACACAGCTGGACACGTCCAAGCTGACGCCGCAGGAGGTGCGCAAG GCCGAACAGATGGCCCGCGAGATCGAGGGAAAGGCGTCCAGCAACCCGCA CCTCCGGGAGGAACGCAATCAGATCGTCGGTGGCGACCTCGACGGCGATG AGGAGGACCGTTACAGTGGCGTCCTCGGCGGCAGCGGCGCCACCTTTGCC GACATGCCGCCGCCGCAGAGCGGCAGCGGCATCGGCGGCGGCGGCGGCGG CAATTCCCGGTCGGGCCCGCGGCAGGATCGGCGGCCGGCGGCGCTGACGG GCGGCAGCGGGGGGGCCGACCTGGGGCAGCGGACGGGGTCGCCGGCAGGG TCTGCGCGGGCGAGCCCGCGCGGCCCGCAAACGGTGTACAAGCCTCCAGC GCTGCGGTCGCGGGAAGCAGCGGAGCAGCAGTTGCAGGGCGTCTTGGGGC TCGCCGGTGGAGGTGGTGGCAGCAGTGGGACCGCTGTGGGAAACGGCGGG GTTACATTTGCGGCCGTGGCCGCCGGGCTGGCCAGCACGGGCGGTGGCGA GCGGCAGCCGCCTCAAGGCACGCCAGGACCAGCAAAAGGTGCAGGGGTCC CTCCAGCTGGGGCTCCCGAGAGAGCCGCGGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11550:2..1485-

>mRNA_P-wetherbeei_contig11550.1.1 ID=mRNA_P-wetherbeei_contig11550.1.1|Name=mRNA_P-wetherbeei_contig11550.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1308bp|location=Sequence derived from alignment at P-wetherbeei_contig11550:2..1485- (Phaeothamnion wetherbeei SAG_119_79)
GGTGCTCCTTTGTGCTGCCGGACGGCACGGGGAGCGAGGGCAAAGGTCAT
TCCGAGCCGGCGAAATATGGCGGGAGGCTCTCCTCCCCACCCCGGTGGCA
AAGCGTCGATGCCGCAGACCCGGGCGTACCAGTTAGGATGTCGGGAGCGT
CTCTTGGGAGCTTTCAAAAGCATGATTGGCGAGCGCGTTAGCGTACAGCT
GTCAGAGGGCACGGCACTCGACGGCGTTTTGCACCTGCTGACGCCATTTC
TCATAGACGGCGCCGAGGACTTCCAGGTGGTGCTTAAGGCGGTTCGGTCC
ACGCAAACGCGCGATGACGCCAGCGACGGCGGTTTGGATGAGAACGGGGC
CTCGTACCACTTCTCCCTCAGCCGCGTTGTGCACATTCGCGCCGAGCACT
TCCCCATGGTGCAGCGGAAGCAGCCGGCGGGCTTCGCCACCGACGCAGAC
ATCAGCGGCTCTGTGCAGGCCGGCGTTGAGCGCGAGCTGCAGATGGCAGA
CCAGTCCTGGGTAACTCCTGCCAAGCCCATGCCGACACCGCCGAGCAGCA
GCAGCCGCCGCGGCGGCGGGCGCGGCGGCGGCGGTGGCGGCGGCGGCGGC
GCCGCCGGCGGCTGGGACCAGTTCGAGGCCAACAAGCGTCTGTTCAACGT
GAATTCGACGTTCGACGAGAACAAGTACACGACACAGCTGGACACGTCCA
AGCTGACGCCGCAGGAGGTGCGCAAGGCCGAACAGATGGCCCGCGAGATC
GAGGGAAAGGCGTCCAGCAACCCGCACCTCCGGGAGGAACGCAATCAGAT
CGTCGGTGGCGACCTCGACGGCGATGAGGAGGACCGTTACAGTGGCGTCC
TCGGCGGCAGCGGCGCCACCTTTGCCGACATGCCGCCGCCGCAGAGCGGC
AGCGGCATCGGCGGCGGCGGCGGCGGCAATTCCCGGTCGGGCCCGCGGCA
GGATCGGCGGCCGGCGGCGCTGACGGGCGGCAGCGGGGGGGCCGACCTGG
GGCAGCGGACGGGGTCGCCGGCAGGGTCTGCGCGGGCGAGCCCGCGCGGC
CCGCAAACGGTGTACAAGCCTCCAGCGCTGCGGTCGCGGGAAGCAGCGGA
GCAGCAGTTGCAGGGCGTCTTGGGGCTCGCCGGTGGAGGTGGTGGCAGCA
GTGGGACCGCTGTGGGAAACGGCGGGGTTACATTTGCGGCCGTGGCCGCC
GGGCTGGCCAGCACGGGCGGTGGCGAGCGGCAGCCGCCTCAAGGCACGCC
AGGACCAGCAAAAGGTGCAGGGGTCCCTCCAGCTGGGGCTCCCGAGAGAG
CCGCGGCG
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