mRNA_P-wetherbeei_contig11548.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11548.1.1
Unique NamemRNA_P-wetherbeei_contig11548.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11548.1.1 vs. uniprot
Match: D8LES3_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LES3_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 2.420e-17
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    7 ADEAIAFSLQRTIQEMVDADTAKKAMARAAFQSFVRAYATRSADSKRIFQVRTLHLGHVARSFGLKDPPSAV 222
            ADE +A+ LQ+ +Q +V  D      AR+AFQS VRAYA R+ DS+ +FQVR+LHLGHVARSF LKDPP+AV
Sbjct: 1089 ADEQLAYELQQGLQLLVAGDKPLLDRARSAFQSHVRAYAARAPDSRAVFQVRSLHLGHVARSFALKDPPTAV 1160          
BLAST of mRNA_P-wetherbeei_contig11548.1.1 vs. uniprot
Match: A0A835Z9X5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X5_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 8.370e-17
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   10 DEAIAFSLQRTIQEMVDADTAKKAM---ARAAFQSFVRAYATRSADSKRIFQVRTLHLGHVARSFGLKDPPSAV 222
            DE +A+ LQ+ +Q +V+ + A+  +   ARAAFQS VRAYAT SAD+K+ FQVR LHLGHVARSF LKD P+A+
Sbjct:  900 DEEVAYELQQGLQALVEGEGARGELLKKARAAFQSHVRAYATHSADTKQAFQVRALHLGHVARSFALKDAPAAI 973          
BLAST of mRNA_P-wetherbeei_contig11548.1.1 vs. uniprot
Match: C3Z545_BRAFL (DUF4217 domain-containing protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z545_BRAFL)

HSP 1 Score: 72.4 bits (176), Expect = 7.930e-14
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 GSADEAI---AFSLQRTIQEMVDADTAKKAMARAAFQSFVRAYATRSADSKRIFQVRTLHLGHVARSFGLKDPPSAV 222
            G+A +A+   A SLQ   +  V +D  K AMAR A+QSF+RAYAT  +  K IF VR LHLGHVA+SFGL+D P  +
Sbjct:   64 GAAQQAVQEAATSLQMAFENYVLSDQDKLAMARKAYQSFIRAYATFPSSLKHIFHVRKLHLGHVAKSFGLRDAPGDI 140          
BLAST of mRNA_P-wetherbeei_contig11548.1.1 vs. uniprot
Match: A0A8K0AC96_BRALA (DDX31 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0AC96_BRALA)

HSP 1 Score: 72.0 bits (175), Expect = 5.120e-13
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 GSADEAI---AFSLQRTIQEMVDADTAKKAMARAAFQSFVRAYATRSADSKRIFQVRTLHLGHVARSFGLKDPPSAV 222
            G+A +A+   A SLQ   +  V +D  K AMAR A+QSF+RAYAT  +  K IF VR LHLGHVA+SFGL+D P  +
Sbjct:  556 GAAQQAVQEAATSLQMAFENYVLSDQDKLAMARKAYQSFIRAYATFPSTLKHIFHVRKLHLGHVAKSFGLRDAPGDI 632          
BLAST of mRNA_P-wetherbeei_contig11548.1.1 vs. uniprot
Match: A0A1V9YZI0_9STRA (DEAD/DEAH box RNA helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YZI0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 9.600e-13
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   13 EAIAFSLQRTIQEMVDADTAKKAMARAAFQSFVRAYATRSADSKRIFQVRTLHLGHVARSFGLKDPPSA 219
            E I   LQ   ++ V AD+A   MA  AFQSFVR+YAT ++D+++ F VR+LH GHVA+SFGL++PP++
Sbjct:  613 EVIVHELQYLFEQSVLADSALFDMACQAFQSFVRSYATHASDTRQYFHVRSLHFGHVAKSFGLREPPAS 681          
BLAST of mRNA_P-wetherbeei_contig11548.1.1 vs. uniprot
Match: A0A6P4YFN8_BRABE (RNA helicase n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YFN8_BRABE)

HSP 1 Score: 71.2 bits (173), Expect = 9.630e-13
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    1 GSADEAI---AFSLQRTIQEMVDADTAKKAMARAAFQSFVRAYATRSADSKRIFQVRTLHLGHVARSFGLKDPPSAV 222
            G+A +A+   A SLQ + +  V +D  K AMAR A+QSF+RAYAT  +  K IF V+ LHLGHVA+SFGL+D P  +
Sbjct:  682 GAAQQAVQEAATSLQMSFENYVLSDQDKLAMARKAYQSFIRAYATFPSTLKHIFHVKKLHLGHVAKSFGLRDAPGDI 758          
BLAST of mRNA_P-wetherbeei_contig11548.1.1 vs. uniprot
Match: A0A250X9K3_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X9K3_9CHLO)

HSP 1 Score: 71.2 bits (173), Expect = 9.650e-13
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    4 SADEAIAFSLQRTIQEMVDADTAKKAMARAAFQSFVRAYATRSADSKRIFQVRTLHLGHVARSFGLKDPPSAV 222
            S+  A+A +LQ+ +   V  D+  + +A  AF+SFVRAYAT   D K IF VR LHLGHVA SFGLKD P+ +
Sbjct:  791 SSGMAVACALQQALMRAVSNDSESQTLASNAFRSFVRAYATHPKDVKHIFNVRQLHLGHVAFSFGLKDAPAMI 863          
BLAST of mRNA_P-wetherbeei_contig11548.1.1 vs. uniprot
Match: A0A4U6VEY8_SETVI (Uncharacterized protein n=4 Tax=Panicoideae TaxID=147369 RepID=A0A4U6VEY8_SETVI)

HSP 1 Score: 70.5 bits (171), Expect = 1.770e-12
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   25 FSLQRTIQEMVDADTAKKAMARAAFQSFVRAYATRSADSKRIFQVRTLHLGHVARSFGLKDPPSAV 222
             SLQR+++  V A+ A K +AR AF S+VRAY     + K+IF V+ LHLGHVARSFGLK+ PS V
Sbjct:  458 MSLQRSLEGFVTAEDATKKLARDAFCSWVRAYTAHRGELKKIFMVKKLHLGHVARSFGLKEQPSLV 523          
BLAST of mRNA_P-wetherbeei_contig11548.1.1 vs. uniprot
Match: C5YY81_SORBI (Uncharacterized protein n=8 Tax=Panicoideae TaxID=147369 RepID=C5YY81_SORBI)

HSP 1 Score: 70.5 bits (171), Expect = 1.780e-12
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   25 FSLQRTIQEMVDADTAKKAMARAAFQSFVRAYATRSADSKRIFQVRTLHLGHVARSFGLKDPPSAV 222
             SLQR+++  V A+ A K +AR AF S+VRAY     + K+IF V+ LHLGHVARSFGLK+ PS V
Sbjct:  505 MSLQRSLEAFVAAEDATKKLARDAFCSWVRAYTAHRGELKKIFMVKKLHLGHVARSFGLKEQPSLV 570          
BLAST of mRNA_P-wetherbeei_contig11548.1.1 vs. uniprot
Match: K3Z4Q8_SETIT (Uncharacterized protein n=10 Tax=PACMAD clade TaxID=147370 RepID=K3Z4Q8_SETIT)

HSP 1 Score: 70.5 bits (171), Expect = 1.780e-12
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   25 FSLQRTIQEMVDADTAKKAMARAAFQSFVRAYATRSADSKRIFQVRTLHLGHVARSFGLKDPPSAV 222
             SLQR+++  V A+ A K +AR AF S+VRAY     + K+IF V+ LHLGHVARSFGLK+ PS V
Sbjct:  509 MSLQRSLEGFVTAEDATKKLARDAFCSWVRAYTAHRGELKKIFMVKKLHLGHVARSFGLKEQPSLV 574          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11548.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LES3_ECTSI2.420e-1761.11DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A835Z9X5_9STRA8.370e-1759.46P-loop containing nucleoside triphosphate hydrolas... [more]
C3Z545_BRAFL7.930e-1453.25DUF4217 domain-containing protein n=1 Tax=Branchio... [more]
A0A8K0AC96_BRALA5.120e-1353.25DDX31 protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]
A0A1V9YZI0_9STRA9.600e-1352.17DEAD/DEAH box RNA helicase n=1 Tax=Achlya hypogyna... [more]
A0A6P4YFN8_BRABE9.630e-1351.95RNA helicase n=1 Tax=Branchiostoma belcheri TaxID=... [more]
A0A250X9K3_9CHLO9.650e-1352.05Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A4U6VEY8_SETVI1.770e-1256.06Uncharacterized protein n=4 Tax=Panicoideae TaxID=... [more]
C5YY81_SORBI1.780e-1256.06Uncharacterized protein n=8 Tax=Panicoideae TaxID=... [more]
K3Z4Q8_SETIT1.780e-1256.06Uncharacterized protein n=10 Tax=PACMAD clade TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11548contigP-wetherbeei_contig11548:1..356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LES3
PFAMsDEAD,DUF4217,Helicase_C
Model size222
Max annot lvl2759|Eukaryota
KEGG koko:K14778,ko:K14806
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003743,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006412,GO:0006413,GO:0006518,GO:0006725,GO:0006807,GO:0008026,GO:0008135,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010501,GO:0016070,GO:0016281,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019538,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0042623,GO:0042802,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons2
Evalue3.96e-18
EggNOG OGsCOG0513@1|root,KOG0348@2759|Eukaryota
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-21_005370.1
EC3.6.4.13
Descriptionhelicase activity
Cds size222
COG categoryJKL
BRITEko00000,ko01000,ko01009,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185916.3288434-CDS-P-wetherbeei_contig11548:0..1561683185916.3288434-CDS-P-wetherbeei_contig11548:0..156Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11548 1..156 +
1683185916.3484008-CDS-P-wetherbeei_contig11548:290..3561683185916.3484008-CDS-P-wetherbeei_contig11548:290..356Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11548 291..356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11548.1.1prot_P-wetherbeei_contig11548.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11548 1..356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11548.1.1

>prot_P-wetherbeei_contig11548.1.1 ID=prot_P-wetherbeei_contig11548.1.1|Name=mRNA_P-wetherbeei_contig11548.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=74bp
GSADEAIAFSLQRTIQEMVDADTAKKAMARAAFQSFVRAYATRSADSKRI
FQVRTLHLGHVARSFGLKDPPSAV
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mRNA from alignment at P-wetherbeei_contig11548:1..356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11548.1.1 ID=mRNA_P-wetherbeei_contig11548.1.1|Name=mRNA_P-wetherbeei_contig11548.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=356bp|location=Sequence derived from alignment at P-wetherbeei_contig11548:1..356+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAGCGCGGACGAGGCTATTGCGTTCTCGCTGCAGCGGACGATCCAGGA GATGGTGGACGCGGATACGGCCAAGAAGGCCATGGCACGGGCGGCGTTCC AGAGCTTCGTGCGGGCGTACGCCACGCGCTCGGCTGACAGCAAACGCATC TTCCAGGTACGGCTTGTCGGTTGCAGGCAGGGCTTGGGGCCTGTTTCGCT TGCTATTAAGACTCCTTTCCATCGAGGCTGAACTCTTCGTTCCCGCTTCC GCACCGACACCTTTACTTTTGCCGGCTGTGGTTCATCCAGGTGCGGACGC TCCACCTGGGCCACGTAGCCCGCAGCTTCGGCCTCAAGGACCCGCCGAGC GCCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11548:1..356+

>mRNA_P-wetherbeei_contig11548.1.1 ID=mRNA_P-wetherbeei_contig11548.1.1|Name=mRNA_P-wetherbeei_contig11548.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=222bp|location=Sequence derived from alignment at P-wetherbeei_contig11548:1..356+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAGCGCGGACGAGGCTATTGCGTTCTCGCTGCAGCGGACGATCCAGGA
GATGGTGGACGCGGATACGGCCAAGAAGGCCATGGCACGGGCGGCGTTCC
AGAGCTTCGTGCGGGCGTACGCCACGCGCTCGGCTGACAGCAAACGCATC
TTCCAGGTGCGGACGCTCCACCTGGGCCACGTAGCCCGCAGCTTCGGCCT
CAAGGACCCGCCGAGCGCCGTC
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