mRNA_P-wetherbeei_contig1154.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1154.4.1
Unique NamemRNA_P-wetherbeei_contig1154.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1154.4.1 vs. uniprot
Match: A0A835YNN2_9STRA (FeThRed_A domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN2_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.850e-25
Identity = 49/86 (56.98%), Postives = 64/86 (74.42%), Query Frame = 3
Query:  165 SDFQENFEGLVAGDRVKVVAEGVKFFHIMKYKDDGFDPHGLEGEVKDIKLVDKKKGVEITANRPVMVAFTEP-KFMGHFEFQELAK 419
            SDFQ+N +GL  G  V+V+A   +F+HI ++KD+G D  G EG +K+IKL  KK G EITANRPV+V FTEP KF+ HFEF+EL +
Sbjct:   29 SDFQDNPQGLEVGQSVRVLAMEQRFYHIQQFKDEGLDATGFEGVIKEIKLTSKKTGAEITANRPVLVTFTEPYKFIAHFEFEELER 114          
BLAST of mRNA_P-wetherbeei_contig1154.4.1 vs. uniprot
Match: A0A8J5XT97_DIALT (FeThRed_A domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XT97_DIALT)

HSP 1 Score: 65.5 bits (158), Expect = 3.480e-10
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 3
Query:  192 LVAGDRVKVVAEGVKFFHIMKYKDDGFDPHGLEGEVKDIKLVDKKKGVEITANRPVMVAFTEPK-FMGHFEFQELAKL 422
            L  GDRV+V+AEG+ FFH+ K+     DPHGLEG V  +++ D     E++AN PV+VAF  P+ F  HFE  EL +L
Sbjct:   72 LSEGDRVRVIAEGLAFFHVPKHSI--LDPHGLEGVV--VRVFDC---AEVSANLPVVVAFEAPRTFRAHFEPSELERL 142          
BLAST of mRNA_P-wetherbeei_contig1154.4.1 vs. uniprot
Match: A0A4D9D7A8_9STRA (FeThRed_A domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7A8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.620e-10
Identity = 34/82 (41.46%), Postives = 54/82 (65.85%), Query Frame = 3
Query:  180 NFEGLVAGDRVKVVAEGVKFFHIMKYKDDGFDPHGLEGEVKDIKLVDKKKGVEITANRPVMVAFTEP-KFMGHFEFQELAKL 422
            N +G+  G+ V+++A+   F+ I K   +G +P G +G V  +K    + GV  +ANRPV+V FT+P KFMGHFEF+E+ ++
Sbjct:  135 NPDGIKEGELVEIIADST-FYSIPKAPKEGVNPKGFQGTVTMLKFT-ARNGVTCSANRPVVVKFTDPYKFMGHFEFREVKRV 214          
BLAST of mRNA_P-wetherbeei_contig1154.4.1 vs. uniprot
Match: A0A6T8PLM7_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8PLM7_HEMAN)

HSP 1 Score: 63.5 bits (153), Expect = 2.360e-9
Identity = 40/93 (43.01%), Postives = 52/93 (55.91%), Query Frame = 3
Query:  147 MPPPRMSDFQENFEGLVAGDRVKVVAEGVKFFHIM-KYKDDGFD-PHGLEGEVKDIKLVDKKKGVEITANRPVMVAFTEPKFMGHFEFQELAK 419
            M P    DF+E       GD+VKVV + V  FH+  K   DG+  P G EG V  +   D++ G  ++ANRP++V F  PKFM HFE  EL K
Sbjct:   69 MFPDHAGDFKE-------GDKVKVVTDDVVLFHVQPKDHPDGYTVPKGSEGIVNKVATEDRQ-GRAVSANRPLIVKFENPKFMAHFEACELEK 153          
BLAST of mRNA_P-wetherbeei_contig1154.4.1 vs. uniprot
Match: L1J147_GUITC (FeThRed_A domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J147_GUITC)

HSP 1 Score: 57.4 bits (137), Expect = 3.410e-7
Identity = 45/116 (38.79%), Postives = 65/116 (56.03%), Query Frame = 3
Query:   87 VESFGRRSCCASPRTARRGRMPP--PRMSDFQENFEGLVAGDRVKVVAEGVKFFHIM--KYKDDGFDPHGLEGEVKDIKLVDKKKGVEITANRPVMVAFTEPK-FMGHFEFQELAK 419
            +++ GRR  CA  R+    RM    P + DF+        GD+VK+V + +  +H++  +Y D      G EGEVK I + +K K  + TANRP+ VAF EPK F+ HFE  E+ K
Sbjct:   33 LDTAGRRGSCAVQRSPMPLRMAENDPLVGDFK-------VGDKVKLVND-LTVYHVLAQQYPDGYVVAKGTEGEVKAI-VTEKYK--QSTANRPIQVAFKEPKPFVIHFEADEITK 137          
BLAST of mRNA_P-wetherbeei_contig1154.4.1 vs. uniprot
Match: A0A5J4YM85_PORPP (Ferredoxin-thioredoxin reductase, variable chain n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YM85_PORPP)

HSP 1 Score: 55.8 bits (133), Expect = 1.320e-6
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 3
Query:  192 LVAGDRVKVVAEGVKFFHIMKYKDDGFDPHGLEGEVKDIKLVDKKKGVEITANRPVMVAFTEP-KFMGHFEFQELAKL 422
            L AG +VKVVA+ V  + +   +    +    EG V  +KL+ +K GVE++ANRPV V FTEP KF+ HFE +EL  L
Sbjct:   66 LEAGAKVKVVAD-VTLYSVPGSQGVAVNVKDKEGVV--VKLLKEKDGVELSANRPVQVQFTEPRKFIAHFEERELETL 140          
BLAST of mRNA_P-wetherbeei_contig1154.4.1 vs. uniprot
Match: A0A835YJJ2_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJJ2_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.420e-6
Identity = 30/37 (81.08%), Postives = 30/37 (81.08%), Query Frame = 3
Query:  306 IKLVDKKKGVEITANRPVMVAFTEP-KFMGHFEFQEL 413
            IKLV KK G EITANRPVMVAFT P KFM HFEF EL
Sbjct:  173 IKLVSKKTGKEITANRPVMVAFTAPHKFMAHFEFDEL 209          
BLAST of mRNA_P-wetherbeei_contig1154.4.1 vs. uniprot
Match: R1BW39_EMIHU (FeThRed_A domain-containing protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BW39_EMIHU)

HSP 1 Score: 53.5 bits (127), Expect = 1.200e-5
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 3
Query:  192 LVAGDRVKVVAEGVKFFHIMKYKDDGFDPHGLEGEVKDIKLVDKKKGVEITANRPVMVAFTEPKFMGHFEFQELAKL*CEPKRT 443
            +  G RV+V ++ V   H+ K+K+ G D  GLEGEV  IK   +    +I+ANRP+ V F  P+F+GHF+  EL+ L  +P+ T
Sbjct:   79 IAVGARVRV-SKRVVLRHVPKHKE-GLDVQGLEGEV--IKSYGRG---DISANRPIKVEFQSPRFVGHFDVNELS-LVDQPEAT 154          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1154.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835YNN2_9STRA1.850e-2556.98FeThRed_A domain-containing protein n=1 Tax=Tribon... [more]
A0A8J5XT97_DIALT3.480e-1048.72FeThRed_A domain-containing protein n=1 Tax=Diacro... [more]
A0A4D9D7A8_9STRA6.620e-1041.46FeThRed_A domain-containing protein n=2 Tax=Monodo... [more]
A0A6T8PLM7_HEMAN2.360e-943.01Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
L1J147_GUITC3.410e-738.79FeThRed_A domain-containing protein n=1 Tax=Guilla... [more]
A0A5J4YM85_PORPP1.320e-646.15Ferredoxin-thioredoxin reductase, variable chain n... [more]
A0A835YJJ2_9STRA1.420e-681.08Phosphodiesterase n=1 Tax=Tribonema minus TaxID=30... [more]
R1BW39_EMIHU1.200e-541.67FeThRed_A domain-containing protein (Fragment) n=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1154contigP-wetherbeei_contig1154:3269..4213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog449447.MAE_01240
Preferred nameftrV
PFAMsFeThRed_A
Model size596
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0008152,GO:0055114
Exons2
Evalue1.12e-08
EggNOG OGs2E4KC@1|root,32ZFB@2|Bacteria,1G8YF@1117|Cyanobacteria
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_003360.1
DescriptionFerredoxin thioredoxin reductase variable alpha chain
Cds size279
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185916.1015728-UTR-P-wetherbeei_contig1154:3268..34141683185916.1015728-UTR-P-wetherbeei_contig1154:3268..3414Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1154 3269..3414 +
1683185916.125048-UTR-P-wetherbeei_contig1154:4042..42131683185916.125048-UTR-P-wetherbeei_contig1154:4042..4213Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1154 4043..4213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185916.1107805-CDS-P-wetherbeei_contig1154:3414..36421683185916.1107805-CDS-P-wetherbeei_contig1154:3414..3642Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1154 3415..3642 +
1683185916.1179714-CDS-P-wetherbeei_contig1154:3991..40421683185916.1179714-CDS-P-wetherbeei_contig1154:3991..4042Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1154 3992..4042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1154.4.1prot_P-wetherbeei_contig1154.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1154 3415..4042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1154.4.1

>prot_P-wetherbeei_contig1154.4.1 ID=prot_P-wetherbeei_contig1154.4.1|Name=mRNA_P-wetherbeei_contig1154.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
MPPPRMSDFQENFEGLVAGDRVKVVAEGVKFFHIMKYKDDGFDPHGLEGE
VKDIKLVDKKKGVEITANRPVMVAFTEPKFMGHFEFQELAKL*
back to top

mRNA from alignment at P-wetherbeei_contig1154:3269..4213+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1154.4.1 ID=mRNA_P-wetherbeei_contig1154.4.1|Name=mRNA_P-wetherbeei_contig1154.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=945bp|location=Sequence derived from alignment at P-wetherbeei_contig1154:3269..4213+ (Phaeothamnion wetherbeei SAG_119_79)
GATTCGTCGCGGCGCTTTTGCCAACGCTCGGAGCGGCTTTCTTCGCGCCG GCTGCGGCGCAACTCCCGGCTTGCCGAAGCGATGCGGTGGAGTCCTTCGG GCGGCGGAGCTGCTGCGCGTCTCCCCGGACGGCGCGGCGAGGGCGGATGC CGCCACCGCGGATGTCGGATTTCCAGGAAAACTTTGAGGGCTTGGTGGCT GGAGACCGAGTAAAGGTGGTGGCGGAAGGCGTCAAGTTCTTCCATATCAT GAAATACAAGGACGATGGTTTCGACCCGCACGGCCTTGAGGGAGAGGTGA AGGACATCAAGCTCGTCGACAAGAAAAAAGGCGTCGAGATCACCGCGAAC AGACCCGTTATGGTGGCCTTTACGGTGGGTTTTGCACGTGGCAGGTTGTG CGAGTTTTAGGAGAAGAAACTGGCTGATCAGCTTTCGCTTCTCGTTGTCC TCGCATGTACGTTTGCGTTTGACGCCGCCTTGTTTAATTTTTCACAGGGT GTTTGTGTGCCTTGAATGCTCGATCGAGTGGTCTTGGTGGCCCCTCTCCG CTGCCTCCGTTTCCGCTTCGTGTCGCCGCTTACCAAGCGCATCGGCCAGT CAATTGTCCAATGTTCCACCCGCTAAATTTATTTGTCAATAATCGTGATG CATCCATTCAAAGTTTGCATCACTCTCTGACTGTTTCTCAACAACCCTCC CCTCATCACTTCCCGTGCCGCAGGAGCCAAAGTTTATGGGACACTTTGAG TTCCAAGAGTTAGCAAAGCTATAGTGCGAGCCAAAACGGACGAGGATGGA TAGATTTGGAAGATGGGGGGAGGGGGGCGCACTTGGGCAAGCCATGCTGC GCGCCGCGAGGGCGAAGACATTCTAGTTGGGAAAGAGCACGGCATAGAGC CCCAAGTGACTTGAAAAAACAAGATAGCAGACAAAAAAGGCAGCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1154:3269..4213+

>mRNA_P-wetherbeei_contig1154.4.1 ID=mRNA_P-wetherbeei_contig1154.4.1|Name=mRNA_P-wetherbeei_contig1154.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig1154:3269..4213+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCACCGCGGATGTCGGATTTCCAGGAAAACTTTGAGGGCTTGGT
GGCTGGAGACCGAGTAAAGGTGGTGGCGGAAGGCGTCAAGTTCTTCCATA
TCATGAAATACAAGGACGATGGTTTCGACCCGCACGGCCTTGAGGGAGAG
GTGAAGGACATCAAGCTCGTCGACAAGAAAAAAGGCGTCGAGATCACCGC
GAACAGACCCGTTATGGTGGCCTTTACGGAGCCAAAGTTTATGGGACACT
TTGAGTTCCAAGAGTTAGCAAAGCTATAG
back to top