mRNA_P-wetherbeei_contig11539.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11539.1.1
Unique NamemRNA_P-wetherbeei_contig11539.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11539.1.1 vs. uniprot
Match: A0A7S2P167_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P167_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.720e-12
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  146 MLTGVPPFDLPHVRDNRFRMMAVERRLGELLQMWGMQLSPSAVDLLQRILVAEPRRRPTVGQLCSHPWVL 355
            ML G+PP+D     D RF+M+A++ +LGE+L+ WG  +SP A DLLQ IL A PR R T GQ+  H WV+
Sbjct:  309 MLVGLPPWDWATKEDLRFKMIAIDGQLGEMLRQWGRSVSPLATDLLQGILRAHPRDRLTFGQIMDHEWVI 378          
BLAST of mRNA_P-wetherbeei_contig11539.1.1 vs. uniprot
Match: D7G0N3_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N3_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.140e-9
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  149 LTGVPPFDLP-HVRDNRFRMMAVERRLGELLQMWGMQLSPSAVDLLQRILVAEPRRRPTVGQLCSHPWVL 355
            L G+PPF +P   RD+R  ++AVERRL E+++ WG+ +S  AV L+Q  L+ +P  R TV  L +HPW++
Sbjct:  273 LAGIPPFHIPIPARDHRCHVIAVERRLLEVVRRWGLTMSDEAVSLIQACLLFDPSERSTVRDLQNHPWLM 342          
BLAST of mRNA_P-wetherbeei_contig11539.1.1 vs. uniprot
Match: A0A7S2WT96_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WT96_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.580e-8
Identity = 30/73 (41.10%), Postives = 52/73 (71.23%), Query Frame = 2
Query:  146 MLTGVPPFDL---PHVRDNRFRMMAVERRLGELLQMWGMQLSPSAVDLLQRILVAEPRRRPTVGQLCSHPWVL 355
            ++TGVPP+D+   P   D RF+++ +  +L +LL+ W + +SPSA DL+QR+L+  P +RPT+ ++ +HPW +
Sbjct:  511 LITGVPPWDVKTGPFPTDRRFQLV-ITGQLDQLLRAWNIVISPSAQDLVQRLLLENPAQRPTIEEIRAHPWFV 582          
BLAST of mRNA_P-wetherbeei_contig11539.1.1 vs. uniprot
Match: A0A7S1E3Y9_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E3Y9_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.180e-8
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  146 MLTGVPPFDLPHVRDNRFRMMAVERRLGELLQMWGMQLSPSAVDLLQRILVAEPRRRPTVGQLCSHPWVLQE 361
            ML G+PP++     D R++M+A +  L  +L+ W  ++S  A DLLQR+L+  PR R ++ ++  HPWVL E
Sbjct:   55 MLVGLPPWEFARAEDPRYKMVA-KGGLARMLRSWNREVSAQAADLLQRMLMENPRERLSLCEVKDHPWVLDE 125          
BLAST of mRNA_P-wetherbeei_contig11539.1.1 vs. uniprot
Match: A0A7S3L2F1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L2F1_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.920e-8
Identity = 30/69 (43.48%), Postives = 47/69 (68.12%), Query Frame = 2
Query:  146 MLTGVPPFDLPHVRDNRFRMMAVERRLGELLQMWGMQLSPSAVDLLQRILVAEPRRRPTVGQLCSHPWV 352
            ML G+PP++     D RF+M+ V   LG +L+ W  ++SP AVDLLQ++L  +PR+R ++ ++  HPWV
Sbjct:  300 MLVGLPPWEFAREEDPRFKMV-VRGGLGRMLRSWDREISPEAVDLLQKMLREDPRQRLSLVEVQDHPWV 367          
BLAST of mRNA_P-wetherbeei_contig11539.1.1 vs. uniprot
Match: A0A7S1CYY2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CYY2_CYCTE)

HSP 1 Score: 63.9 bits (154), Expect = 4.950e-8
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  146 MLTGVPPFDLPHVRDNRFRMMAVERRLGELLQMWGMQLSPSAVDLLQRILVAEPRRRPTVGQLCSHPWVLQE 361
            ML G+PP++     D R+RM+ V+  L  +LQ W   +SP+A DLLQ++L+  PR R ++ ++  HPWVL E
Sbjct:  194 MLVGLPPWEFAREEDPRYRMV-VKGGLQRMLQSWNRPVSPAASDLLQKMLMENPRERLSLCEVKDHPWVLDE 264          
BLAST of mRNA_P-wetherbeei_contig11539.1.1 vs. uniprot
Match: A0A7S2UP25_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UP25_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 7.980e-7
Identity = 30/69 (43.48%), Postives = 41/69 (59.42%), Query Frame = 2
Query:  146 MLTGVPPFDLPHVRDNRFRMMAVERRLGELLQMWGMQLSPSAVDLLQRILVAEPRRRPTVGQLCSHPWV 352
            MLTG   + +PH  D +F  M     L  LL  WG+ LSP   DLL+RIL  +PR R T+ ++ +HPW+
Sbjct:  381 MLTGNTSYQIPHPTDAQFYWMT--EGLPNLLDQWGVVLSPEGQDLLKRILTVDPRERSTLEEIQNHPWM 447          
BLAST of mRNA_P-wetherbeei_contig11539.1.1 vs. uniprot
Match: A0A1E7EV49_9STRA (Kinase-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EV49_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.470e-6
Identity = 26/72 (36.11%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  146 MLTGVPPFDLPHVRDNRFRMMAVERRLGELLQMWGMQLSPSAVDLLQRILVAEPRRRPTVGQLCSHPWVLQE 361
            ML G+PP++     D R++M+ ++ +L  +L  W   +S  A DLLQ++L+ +PR+R ++ ++  HPWV+ E
Sbjct:  161 MLVGLPPWEFARPEDPRYKMV-IKGKLARMLDSWKRPISAQAADLLQKMLMEDPRQRLSLTEVKDHPWVVGE 231          
BLAST of mRNA_P-wetherbeei_contig11539.1.1 vs. uniprot
Match: A0A7S2DXP3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DXP3_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 6.460e-6
Identity = 25/69 (36.23%), Postives = 41/69 (59.42%), Query Frame = 2
Query:  146 MLTGVPPFDLPHVRDNRFRMMAVERRLGELLQMWGMQLSPSAVDLLQRILVAEPRRRPTVGQLCSHPWV 352
            M TG  P+ +P   D+RF        L + ++ WG+QLS    DLLQ +++  P+ RP++ Q+ +HPW+
Sbjct:   28 MCTGYDPWTIPQDSDSRF-FYFTRGHLKKFMEEWGVQLSDDLFDLLQWMMMRNPKERPSLRQVRAHPWM 95          
BLAST of mRNA_P-wetherbeei_contig11539.1.1 vs. uniprot
Match: A0A7S2LTV4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LTV4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 9.750e-6
Identity = 25/69 (36.23%), Postives = 44/69 (63.77%), Query Frame = 2
Query:  146 MLTGVPPFDLPHVRDNRFRMMAVERRLGELLQMWGMQLSPSAVDLLQRILVAEPRRRPTVGQLCSHPWV 352
            +L G  PF +P   D  FR +++++ L   LQ   + L  S V+LLQ++L+A+P++R T+ ++  HPW+
Sbjct:  452 ILVGKKPFAMPDPNDTNFRRISIDKDLDGFLQAKNIHLDASIVNLLQKMLLADPQQRLTLSEIVDHPWM 520          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11539.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A7S2P167_9STRA2.720e-1251.43Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
D7G0N3_ECTSI2.140e-945.71Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S2WT96_9STRA1.580e-841.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1E3Y9_9STRA2.180e-840.28Hypothetical protein n=2 Tax=Thalassionema nitzsch... [more]
A0A7S3L2F1_9STRA4.920e-843.48Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1CYY2_CYCTE4.950e-843.06Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2UP25_9STRA7.980e-743.48Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A1E7EV49_9STRA1.470e-636.11Kinase-like protein n=1 Tax=Fragilariopsis cylindr... [more]
A0A7S2DXP3_9STRA6.460e-636.23Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S2LTV4_9STRA9.750e-636.23Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11539contigP-wetherbeei_contig11539:928..2137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008870970.1
PFAMsPkinase
Model size952
Max annot lvl2759|Eukaryota
KEGG rclassRC01978
KEGG koko:K03644
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,map00785,map01100
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.28e-13
EggNOG OGsKOG0583@1|root,KOG0583@2759|Eukaryota
EC2.8.1.8
Descriptionprotein serine/threonine kinase activity
Cds size243
COG categoryG
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185916.0058281-UTR-P-wetherbeei_contig11539:927..14911683185916.0058281-UTR-P-wetherbeei_contig11539:927..1491Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11539 928..1491 -
1683185916.0295491-UTR-P-wetherbeei_contig11539:1992..21371683185916.0295491-UTR-P-wetherbeei_contig11539:1992..2137Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11539 1993..2137 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185916.0146918-CDS-P-wetherbeei_contig11539:1491..15931683185916.0146918-CDS-P-wetherbeei_contig11539:1491..1593Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11539 1492..1593 -
1683185916.022106-CDS-P-wetherbeei_contig11539:1851..19921683185916.022106-CDS-P-wetherbeei_contig11539:1851..1992Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11539 1852..1992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11539.1.1prot_P-wetherbeei_contig11539.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11539 1492..1992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11539.1.1

>prot_P-wetherbeei_contig11539.1.1 ID=prot_P-wetherbeei_contig11539.1.1|Name=mRNA_P-wetherbeei_contig11539.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
MLTGVPPFDLPHVRDNRFRMMAVERRLGELLQMWGMQLSPSAVDLLQRIL
VAEPRRRPTVGQLCSHPWVLQELQQQPSHN*
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mRNA from alignment at P-wetherbeei_contig11539:928..2137-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11539.1.1 ID=mRNA_P-wetherbeei_contig11539.1.1|Name=mRNA_P-wetherbeei_contig11539.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1210bp|location=Sequence derived from alignment at P-wetherbeei_contig11539:928..2137- (Phaeothamnion wetherbeei SAG_119_79)
CAATAAGGACTCGCCGCAGGCGAGGAAGGATGGGCAAACGAGTTTTGGTT TTTGCCGGGATGCAAATGGTTGCACGTTCTATGGCTTTTTCTGACGTCTA CATGTTTATCCACCGCTCACTTCGCGCGCTCGTTCACCAATCAGAATGTT GACGGGGGTCCCGCCCTTCGACCTGCCGCATGTGCGGGACAACCGCTTCC GCATGATGGCCGTGGAGAGGCGGCTCGGCGAGCTACTGCAGATGTGGGGG ATGCAATTGTCGCCCAGCGCCGTCGACCTCCTGCAGGTGAGGAAATGAGA GAGAGAGACAGAGAGAGAGAGACAGAGAGAGAGCTGCTTACCTTTGAAAT CACTTTTGAGTATTAAAAGATCCTTCTCTTTGTTGCAATTTTGGTTTAGA TATTTCCCCGCTTGCATTTTTGAGGGGATTTGGATTGAACGCCCTTCGTT TGCCGGCGGTTTTGGCGCAAGTGACGTTGTGGCGCTTATGGACGTTTCCC CAATTGTCCGGTATCGGATGCCAATGCCCTTCCCTACATTGCAGAGGATA CTCGTGGCGGAACCGAGAAGAAGGCCTACAGTCGGGCAGCTCTGCAGTCA CCCTTGGGTCCTGCAAGAGCTGCAACAGCAGCCTTCCCACAATTAAGCAC TTTTGTTCTGGAACAGAAGGCGGCGGAGTGGCGAAAGTGCACGTCTGATG GCTGGTTGGCGGCTATGCCGAGCCGACCTGACCTGCTATGACCCGGGTGC AGCGAGCACGGTGGCATGTCGCTAGTGGCGATGGCGGCAGCAGCTAATCC GCCGCCATACTCCCGCTGCAGGCTCTGCAGTGGAAACGAGTGAGAAGGCG AAGGGAAACAACGGCGGCAGTCAGCCGACGCTACAGCGCCTTGGACTCTA CGGTCTTCGCCTGGCCGCGGTTCCCATGATGACGGCTGTGAGGGGCCATT GCCGGCGGCTAGCGCCATGGCTACCCGCACGTAGTACATGATTGACGAAC AATACACTCCACAGGTCGAACCGGGAACACAGCGGTTCCCGGTGACCGCA GTTACTGACCTTCTTTTCTCTCGCTGTGGTTATTACAACGGACAACAAAA ATTGGCATCTAAGAAAGTGACTCTTGCGTTGGGGGTTACGGCAATGCCAA AAATAAGTAAATTGAAGGGATCCGAAGTCCAGATAATCATTTGTGCCATG CATTTGAGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11539:928..2137-

>mRNA_P-wetherbeei_contig11539.1.1 ID=mRNA_P-wetherbeei_contig11539.1.1|Name=mRNA_P-wetherbeei_contig11539.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig11539:928..2137- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGACGGGGGTCCCGCCCTTCGACCTGCCGCATGTGCGGGACAACCG
CTTCCGCATGATGGCCGTGGAGAGGCGGCTCGGCGAGCTACTGCAGATGT
GGGGGATGCAATTGTCGCCCAGCGCCGTCGACCTCCTGCAGAGGATACTC
GTGGCGGAACCGAGAAGAAGGCCTACAGTCGGGCAGCTCTGCAGTCACCC
TTGGGTCCTGCAAGAGCTGCAACAGCAGCCTTCCCACAATTAA
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