mRNA_P-wetherbeei_contig1153.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1153.1.1
Unique NamemRNA_P-wetherbeei_contig1153.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1153.1.1 vs. uniprot
Match: D7FJ52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ52_ECTSI)

HSP 1 Score: 386 bits (992), Expect = 2.440e-116
Identity = 247/583 (42.37%), Postives = 343/583 (58.83%), Query Frame = 2
Query:  152 KLGDVIRDSDAPTQATPA----ERLAASRATFYSLNALTRALDVTQGPGGAEAGIADPMMQVLTTQELREAGEACVESLLALIGCKSLELTKPFVSLITQCFCQLFERCESLNMVNAILDMQAVAEAKKATVGARIAAVTAQGALARTAGIRMVSLLPSTSAALGRQAKSSEPHVRVAALLALRDLVDGASAFGAPINPEVVRVCVRACADRCPEARAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWASGISGTGLSPALEAVLAPIVKGLDDESPGVRLAMAEATGAVLAAAVDGAAAERDRRGVIAARDQDQDDTAEATAARAVAPQSQMDKLSARFREMSQDMKVSVGKLSDKKLPAIAPT-TLDNAILILSELFRRATFPT----LTSRDYMSGIAAAFVVLLRGAR--HRITAATVPAVIRSVLELLDSDRLPQNGNEACAVRTAVEYVLHDGVCARVPEGIQLAAARELIMVLSEVVGSSPPAAGFAPLLNEHQLQVCLVELSHLTHALGQACAALKDSLVGCLCPLLGHASYGVRFEAAVGLTALGNALPFFAAGLLSRCLQDMARHRETLLA 1867
            ++GD  +  +A  QA  A    +R A ++  F++L++L   L +         G +D         ELR   EAC  +L  ++  K LE+T PF   + +C  Q+FE CESLN V A+LD+  + + +KA   +R+A + A G +++ AG+R+VS+LP + AA  +Q K  E  VR  A+ A+R LV+GA   G+ ++ EV++  V+A ADRCPE R  A                              A  ++ +     LE ++A  V+GLDDESP  RLA A ATGA L+A V+G+AAE +R GVIAARDQD                      + + +EM  +MKV + KL+DKK+P +  + T D  +  LSELF RAT         SR+YM+G+A AFV L R      R+ + T P ++ +VL+LLD+DRLPQ   E   VRTAVEY++ +G+ A +PE  Q   ARE++ +LSEV GS+PPA+GF PL NEHQ+QVCLVELSHLT ALGQACAALKD+L   L  LL H SYGVRFEAAV L +LG+ALP+ AAGLL +CL ++ +  + L+A
Sbjct:   30 RIGDASQLVEAALQARVAASQDQRFATTKTLFFALSSLCGVLRLELRMKHLGQGKSD--------SELRADCEACNTTLQGVLSNKKLEVTAPFCRSVAECLSQVFELCESLNAVGAVLDLHKLLDNRKALPESRMAVLEALGEVSKAAGLRVVSVLPESVAAAAKQLKQPEALVRAKAVFAVRALVEGADGVGSSVHGEVLKAAVKATADRCPEVRVEAFKLCLSLAEA--------------------APNLAASSSPVPLETLVALCVRGLDDESPAARLAAAAATGAALSAGVEGSAAENERLGVIAARDQDHXXXXXXXXXXXXXXXXXXKTFANKLKEMGAEMKVGMAKLNDKKMPVLGDSLTPDKVVQFLSELFGRATAAVGQSQSQSREYMAGVAEAFVCLWRRPYMLQRVNSTTAPRLVGAVLDLLDTDRLPQGAGETGVVRTAVEYIIREGISAPLPELSQQLVAREMLQILSEVAGSAPPASGFPPLYNEHQIQVCLVELSHLTRALGQACAALKDTLADALSTLLAHPSYGVRFEAAVALASLGSALPWCAAGLLQQCLDEIQQQYDALMA 584          
BLAST of mRNA_P-wetherbeei_contig1153.1.1 vs. uniprot
Match: A0A835Z1V0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V0_9STRA)

HSP 1 Score: 295 bits (756), Expect = 6.350e-83
Identity = 233/647 (36.01%), Postives = 313/647 (48.38%), Query Frame = 2
Query:  194 ATPAERLAASRATFYSLNALTRALD-VTQGPGGAEAGIADPMMQVLTTQELREAGEACVESLLALIGCKSLELTKPFVSLITQCFCQLFERCESLNMVNAILDMQAVAEAKKATVGARIAAVTAQGALARTAGIRMVSLLPSTSAALGRQAKSSEPHVRVAALLALRDLVDGASAFGAPINPEVVRVCVRACADRCPEA------RAA------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWASGISGTGL-SPALEAVLAPIVKGLDDESPGVRLAMAEATGAVLAAAVDGAAAERDRRGVIAARDQDQDDTAEATA----------ARAVAPQSQMDKLSARFREMSQDMKVSVGKLSDKKLPAIAPTTLDNAILILSELFRRATFPTLTSRDYMSGIAAAFVVLLR--GARHRITAATVPAVIRSVLELLDSDRLPQNGNEACAVRTAVEYVLHDGVCARVPEGIQLAAARELIMVLSEVVGSSPPAAGFAPLLNEHQLQV--------------------------------------------------CLVELSHLTHALGQACAALKDSLVGCLCPLLGHASYGVRFEAAVGLTALGNALPFFAAGLLSRCLQDMARHRETLLAP 1870
            A P +  +ASR  FY+L+ +  AL+ +T  P  A AG AD          LR  G   V + LA++    LE+T PF  L+  C C     CE L+    + D+ A A+ K+   G R+AA+   G +A   G+R+VS+LP+  AA G+  +SS+P VRVAA+ +L  ++ G    G  ++    +   RA +DRCPE       RA                                                L A   S +   S  LE+VL P  +GL+D SPGVR AMA A  AVLAA+V+     R R   +AA+D D                   A   A QS +DK SAR +EMS +MK+                +  N    +   + RAT+P+  +R++MSG AAA V  LR      RI + +   ++R++L+L+++D+LPQNGNEAC VR++VE+V+  G+CA   EG QL  AREL+ VL EV G + P  GF PLLNEHQLQV                                                  CLVELSHL  ALGQA AALKD+L GCL PL+ H SYGVRFEAAV L A G+ LP  AA  L  C+Q++  H + L AP
Sbjct:   43 APPEQAFSASRRVFYALHDVLEALERLTVRP--AAAGAADV---------LRAQGPPAVTAALAVLSAPGLEVTPPFRRLVGACACAALGACEGLSAAATVYDLCAAADGKRCAAGTRVAALRVAGDVAALTGVRVVSVLPTAVAACGKHLRSSDPIVRVAAMESLSAIIAGVGDVGGAVHVNAAKYATRATSDRCPEVWSTPPPRACQSSSKAPFTNAWQHSTNGTKKHRSKKQCIDTRSVLRFVQVRSAAATCLAAIAASSSNFRSATLESVLLPCARGLEDASPGVRSAMATAVAAVLAASVE---LLRRRCSRLAAQDGDXXXXXXXXXXXXXXXXXXMASGSAAQSSIDKFSARLKEMSAEMKLR---------------SCSNNSASVHFYYCRATYPSPGTREFMSGAAAAMVAFLRHPDISKRIGSVSAVWLVRALLDLVETDKLPQNGNEACLVRSSVEHVVRAGLCAGANEGRQLLIARELLTVLGEVAGRAQPGQGFQPLLNEHQLQVTSSCHRFNARRLEVKSVLELGLXXXXXXXXXXXXXXXXXXXXXXXXXXXACLVELSHLVTALGQAAAALKDNLCGCLAPLVAHPSYGVRFEAAVALAAAGHGLPHAAAAQLRGCVQEIRAHYKALTAP 660          
BLAST of mRNA_P-wetherbeei_contig1153.1.1 vs. uniprot
Match: A0A6H5K572_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K572_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 8.410e-77
Identity = 200/539 (37.11%), Postives = 271/539 (50.28%), Query Frame = 2
Query:  596 MVSLLPSTSAALGRQAKSSEPHVRVAALLALRDLVDGASAFGAPINPEVVRVCVRACADRCPEARAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWASGISGTGLSPALEAVLAPIVKGLDDESPGVRLAMAEATGAVLAAAVDGAAAERDRRGVIAARDQDQDDTAEATAARAVAPQSQMDKLSARF----------------------------------------------------------------REMSQDMKVSVGKLSDKKLPAIAPT-TLDNAILILSELFRRATFPT----LTSRDYMSGIAAAFVVLLRGAR--HRITAATVPAVIRSVLELLDSDRLPQNGNEACAVRTAVEYVLHDGVCARVPEGIQLAAARELIMVLSEVVGSSPPAAGFAPLLNEHQLQ--------------------------------------------VCLVELSHLTHALGQACAALKDSLVGCLCPLLGHASYGVRFEAAVGLTALGNALPFFAAGLLSRCLQDMARHRETLLA 1867
            +VS+LP + AA  +Q K  E  VR  A+ A+R LV+GA   G+ ++ EV++V V+A ADRCPE R  A                              A  ++ +     LE ++A  V+GLDDESP  RLA A ATGA L+A V+G+AAE +R GVIAARDQ  +           + + ++ KL +R+                                                                +EM  +MKV + KL++KK+PA+  + T +  +  LSELF RAT         SR+YM+G+A AFV L R      R+ + T P ++ +VL+LLD+DRLPQ   E   VRTAVEY++ +G+ A +PE  Q   ARE++ +LSEV GS+PPA+GF PL NEHQ+Q                                            VCLVELSHLT ALGQACAALKD+L   L  LL H SYGVRFEAAV L +LG+ALP+ AAGLL +CL ++ +  + L+A
Sbjct:  354 VVSVLPESVAAAAKQLKQPEALVRAKAVFAVRALVEGAGGVGSSVHGEVLKVAVKATADRCPEVRVEAFKLCLSLAEA--------------------APNLAASSSPVPLETLVALCVRGLDDESPAARLAAAAATGAALSAGVEGSAAENERLGVIAARDQVCN-----------SGERRLGKLGSRYGNRWCHCCAVXXXXXXXXXXXXXXXXXXXXKXXXXXXXXXXXXXXXXXXXXXGGGGGKTFANKLKEMGAEMKVGMAKLNEKKMPALGDSLTPEKVVQFLSELFGRATAAIGQSQSQSREYMAGVAEAFVCLWRRPNMLQRVNSTTAPRLVGAVLDLLDTDRLPQGAGETGVVRTAVEYIIREGISAPLPELSQQLVAREMLQILSEVAGSAPPASGFPPLYNEHQIQARQEECCQGQGNVTTLSRVLSTAIVSVRLTSFNLVKVMRQPNPQVCLVELSHLTRALGQACAALKDTLADALSTLLAHPSYGVRFEAAVALASLGSALPWCAAGLLQQCLDEIQQQYDALMA 861          
BLAST of mRNA_P-wetherbeei_contig1153.1.1 vs. uniprot
Match: A0A7S1XLB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLB4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 6.040e-16
Identity = 144/546 (26.37%), Postives = 220/546 (40.29%), Query Frame = 2
Query:  407 LTKPFVSLITQCFCQLFERCESLNMVNAILDMQAVAEAKKATVGARIAAVTAQGALARTAGIRMVSLLPSTSAALGRQAKSSEPHVRVAALLALRDLV-----------DGASAFGAPINPE-------VVRVCVRACADRCPEARAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWASGISGTGLSPALEAVLAPIVKGLDDESPGVRLAMAEATGAVLAAAVDGAAAERDRRGVIAARDQDQDDTAEATAARAVAPQSQMDKLSARFREMSQDMKVSVGKLSDKKLPAIAPTTLDNAILILSELFRRATFPTLTSRDYMSGIAAAFVVLLRGARHRITAATVPAVIRSVLELLDSDRLPQ------------------------------------NGNEAC-----AVRTAVEYVLHDGVCARVPEGIQLAAARELIMV--LSEVVGSSPPAAGFAPLLNEHQLQVCLVELSHLTHALGQACAALKDSLVGCLCPLLGHASYGVRFEAAVGLTALGNALPFFAAGLLSRCLQDMARHRETL 1861
            L   F SL +  +C+L +     N+ +A  D+  +   ++A  G R+AA  A G + +    R+ SL+    AA  R ++SSE  +RVA L ALR L+           DG  A G     E       +++   +A  DR    RAAA                            L A+    T ++P    +L    +G  DES GV  A ++A   VL+AA+D      + R V AAR  D  +TA A  +R     + +DK+ +  ++      + +G+     L  +   TL+  +  L ++  R       S+   +GI   +  LL   + RIT   +P ++R  L +L    +                                      N  +AC      +R  V  VL  G  A   E +Q    REL+ +  +   +     AAG A    +HQ+QVCL E+SHL  AL  A A     L+  L  L  H + G+R EAAV + AL  ALP      L   ++ M  H ++L
Sbjct:   92 LQAAFASLFSCYYCELGQG----NVFSAASDLLELCALRQAPYGLRVAAAAAVGNVMQRMSGRLSSLVGDVIAACLRLSRSSEACLRVAGLQALRKLLLGAGGGLFDSGDGGGADGKXXXXEADRGAAEIIKALGKALQDRHAGVRAAAVAVIGA----------------------LPAADDGMTAVAPL--TLLELCFRGFQDESMGVIAAASQAAADVLSAALDANVRGAESRAVDAARAGDLQETAVAEESRK--SMTTLDKMRSGLKD------IKLGRRRGNALEGLM--TLEAGVNFLMQMIPRLPHGP-GSQAAQTGIFDCWAALLERQKRRITENDLPVLVRQALGVLSPSAVEAAVRNAKSVAAAEISQTVSSXXXXXXXXXXXAQLNAANVRKACNREVALLRAGVASVLRRGFAATQGERVQQLLLRELVQLCFVQPALEDGGGAAG-ARYDGDHQIQVCLGEISHLVSALQDAAAPYARELLVALMKLCCHDTLGLRLEAAVAMAALFEALPAEFPAALEDIMRMMESHLKSL 597          
BLAST of mRNA_P-wetherbeei_contig1153.1.1 vs. uniprot
Match: A0A7S4QY98_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QY98_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 5.290e-10
Identity = 54/173 (31.21%), Postives = 82/173 (47.40%), Query Frame = 2
Query: 1358 GARHRITAATVPAVIRSVLELLDSDRLPQNGNEACAVRTAVEYVLHDGVCARVPEGIQLAAARELIMVLSEVVG-----SSPPAAGFAPLLNEHQLQVCLVELSHLTHALGQACAALKDSLVGCLCPLLGHASYGVRFEAAVGLTALGNALPFFAAGLLSRCLQDMARHRETL 1861
            G +     A++ A  R  L +L S        +A   R A   V+  G+     E +QLA  R++ ++L    G     ++PP    +  +N HQLQV LVE+SHL  A+G+A A+  + +   L   L H  +GVR EAAV  +A+  A P     +L   + DM  H   +
Sbjct:  115 GGKAASAMASMGASFRGGLTMLRSSA------DAGLARLATGRVVRRGLAEASSEPVQLALLRDMALMLLGSTGGGDGVAAPPTGSKSAPMNRHQLQVVLVEVSHLIVAVGEAAASSLNDICPALEACLRHPDHGVRHEAAVACSAVATAFPCEGRRILKSRIDDMQSHMNEI 281          
BLAST of mRNA_P-wetherbeei_contig1153.1.1 vs. uniprot
Match: A0A7S1Z2Z2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z2Z2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.020e-8
Identity = 42/119 (35.29%), Postives = 63/119 (52.94%), Query Frame = 2
Query: 1520 EGIQLAAARELIMVLSEVVG-----SSPPAAGFAPLLNEHQLQVCLVELSHLTHALGQACAALKDSLVGCLCPLLGHASYGVRFEAAVGLTALGNALPFFAAGLLSRCLQDMARHRETL 1861
            E +QLA  R++ ++L    G     ++PP    +  +N HQLQV LVE+SHL  A+G+A A+  + +   L   L H  +GVR EAAV  +A+  A P     +L   + DM  H   +
Sbjct:   11 EPVQLALLRDMALMLLGSTGGGDGVAAPPTDSKSAPMNRHQLQVVLVEVSHLIVAVGEAAASSLNDICPALEACLRHPDHGVRHEAAVACSAVATAFPCEGRRILKSRIDDMQSHMNEI 129          
BLAST of mRNA_P-wetherbeei_contig1153.1.1 vs. uniprot
Match: B7FRH8_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FRH8_PHATC)

HSP 1 Score: 65.5 bits (158), Expect = 3.150e-7
Identity = 49/140 (35.00%), Postives = 69/140 (49.29%), Query Frame = 2
Query: 1451 NEACAVRTAVEYVLHDGVCARVPEGIQLAAARELIMVLSEVVGSSPPAAGFAPLL--NEHQLQVCLVELSHLTHALGQACAALKDSLVGCLCPLLGHASYGVRFEAAVGLTALGNALPFFAAGLLSRCLQDMARHRETLL 1864
            N+A   R A+  VL +G+    PE  Q+    ELI+ L    G     +  AP +  N +QLQ+ LVE+SHL  ALG+A A+  D  V  L   L H   GVR EAA+   +L  + P     L+   + +M  H   L+
Sbjct:  565 NDAGLARLALSRVLREGLSEVTPEPTQINFLHELILCLP---GKGDAESNEAPAVQWNANQLQIVLVEISHLLAALGEAAASRIDDAVIRLEICLEHMDQGVRHEAAIACASLTASFPTEGRKLVRSSIDEMQLHHAQLV 701          
BLAST of mRNA_P-wetherbeei_contig1153.1.1 vs. uniprot
Match: A0A7S2M4Z2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M4Z2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.030e-6
Identity = 41/120 (34.17%), Postives = 56/120 (46.67%), Query Frame = 2
Query: 1469 RTAVEYVLHDGVCARVPEGIQLAAARELIMVLSEVVGSSPPAAGF----------APLLNEHQLQVCLVELSHLTHALGQACAALKDSLVGCLCPLLGHASYGVRFEAAVGLTALGNALP 1798
            R     V+  G+   V E IQL   R+L  +    VG + P  G              +N HQLQV L+E+SH+  A+G+A A+  + L   L   L H  +GVR EAA    A+  A P
Sbjct:  212 RLLASNVVRKGITENVSESIQLTILRDLATMCRSSVGHTSPDGGIDARRSLGGEKGKSMNRHQLQVALIEISHIVVAVGEAGASSLEDLHPILQDCLSHPDHGVRHEAAAVYAAIAQAFP 331          
BLAST of mRNA_P-wetherbeei_contig1153.1.1 vs. uniprot
Match: A0A7S3L636_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L636_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.940e-6
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 2
Query: 1466 VRTAVEYVLHDGVCARVPEGIQLAAARELIMVL-SEVVGSSPPAAGFAPL---------LNEHQLQVCLVELSHLTHALGQACAALKDSLVGCLCPLLGHASYGVRFEAAVGLTALGNALPFFAAGLLSRCLQDMARHRETLL 1864
            VRT V  +   G+   V E +Q+    + +  L +    +S P +  A           LN +QLQV LVE+SHL  +LG+A ++  + ++  +  LL H   GVRFEAAV  TAL N  P   + +    + ++  H   L+
Sbjct:    3 VRTLVSRIFRQGLTEGVAEPVQIGLLDDWVSSLDAHHQSASSPGSEEAKTKGAFDSGKQLNANQLQVALVEISHLIASLGEAVSSKVEDILKAVRQLLEHTDTGVRFEAAVACTALVNNFPPVGSTIFPDLILEIQIHHSELM 145          
BLAST of mRNA_P-wetherbeei_contig1153.1.1 vs. uniprot
Match: A0A448ZH86_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZH86_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 7.380e-6
Identity = 40/140 (28.57%), Postives = 67/140 (47.86%), Query Frame = 2
Query: 1454 EACAVRTAVEYVLHDGVCARVPEGIQLAAARELIMVLSEVVGSSPPAAGFAPLLNEHQLQVCLVELSHLTHALGQACAALKDSLVGCLCPLLGHASYGVRFEAAVGLTALGNALPFFAAGLLSRCLQDMARHRETLLAPA 1873
            + C  R     VL DG+  ++ E  QL    EL+ + S    +          L  +QLQV LVE+SHL   LG+A A+  + ++  L   L H+++GVR EAAV   ++ +  P     ++  C+  +      +++ A
Sbjct:  517 DGCIARLLTNQVLRDGLAQQMTEISQLKVLHELVDLCSNKQSA----------LQGNQLQVILVEISHLFATLGEATASSLEQILPGLLKCLSHSNHGVRHEAAVTFGSIASVFPSEGRKIVRECINKIQFEHAEMMSTA 646          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1153.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FJ52_ECTSI2.440e-11642.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z1V0_9STRA6.350e-8336.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5K572_9PHAE8.410e-7737.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1XLB4_9STRA6.040e-1626.37Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S4QY98_9STRA5.290e-1031.21Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A7S1Z2Z2_9STRA1.020e-835.29Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
B7FRH8_PHATC3.150e-735.00Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2M4Z2_9STRA2.030e-634.17Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S3L636_9STRA4.940e-631.47Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A448ZH86_9STRA7.380e-628.57Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1153contigP-wetherbeei_contig1153:1913..5385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FJ52
Model size1876
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005982,GO:0005984,GO:0005991,GO:0006073,GO:0006521,GO:0008150,GO:0008152,GO:0009311,GO:0009889,GO:0009987,GO:0010364,GO:0010565,GO:0010817,GO:0019222,GO:0031323,GO:0031326,GO:0031335,GO:0032350,GO:0033238,GO:0042762,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046885,GO:0048831,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051239,GO:0062012,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:1900055,GO:1900908,GO:1900911,GO:2000024,GO:2000026
Exons7
Evalue1.85e-117
EggNOG OGsKOG1822@1|root,KOG1822@2759|Eukaryota
Descriptionretrograde transport, endosome to Golgi
Cds size1800
COG categoryQ
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1153.1.1prot_P-wetherbeei_contig1153.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1153 1913..5206 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185915.5388489-CDS-P-wetherbeei_contig1153:1912..21551683185915.5388489-CDS-P-wetherbeei_contig1153:1912..2155Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1153 1913..2155 -
1683185915.5471244-CDS-P-wetherbeei_contig1153:2399..26721683185915.5471244-CDS-P-wetherbeei_contig1153:2399..2672Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1153 2400..2672 -
1683185915.554385-CDS-P-wetherbeei_contig1153:2886..30571683185915.554385-CDS-P-wetherbeei_contig1153:2886..3057Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1153 2887..3057 -
1683185915.5615392-CDS-P-wetherbeei_contig1153:3421..40121683185915.5615392-CDS-P-wetherbeei_contig1153:3421..4012Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1153 3422..4012 -
1683185915.568767-CDS-P-wetherbeei_contig1153:4230..43771683185915.568767-CDS-P-wetherbeei_contig1153:4230..4377Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1153 4231..4377 -
1683185915.5759587-CDS-P-wetherbeei_contig1153:4831..52061683185915.5759587-CDS-P-wetherbeei_contig1153:4831..5206Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1153 4832..5206 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185915.5833952-UTR-P-wetherbeei_contig1153:5206..52321683185915.5833952-UTR-P-wetherbeei_contig1153:5206..5232Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1153 5207..5232 -
1683185915.5907001-UTR-P-wetherbeei_contig1153:5335..53851683185915.5907001-UTR-P-wetherbeei_contig1153:5335..5385Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1153 5336..5385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1153.1.1

>prot_P-wetherbeei_contig1153.1.1 ID=prot_P-wetherbeei_contig1153.1.1|Name=mRNA_P-wetherbeei_contig1153.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=600bp
MQLSPGRAQRANSGGGRVGLAQTAKKLGDVIRDSDAPTQATPAERLAASR
ATFYSLNALTRALDVTQGPGGAEAGIADPMMQVLTTQELREAGEACVESL
LALIGCKSLELTKPFVSLITQCFCQLFERCESLNMVNAILDMQAVAEAKK
ATVGARIAAVTAQGALARTAGIRMVSLLPSTSAALGRQAKSSEPHVRVAA
LLALRDLVDGASAFGAPINPEVVRVCVRACADRCPEARAAAAAALAAVGS
SGSGGLGGGGSGGRGGGGGLWASGISGTGLSPALEAVLAPIVKGLDDESP
GVRLAMAEATGAVLAAAVDGAAAERDRRGVIAARDQDQDDTAEATAARAV
APQSQMDKLSARFREMSQDMKVSVGKLSDKKLPAIAPTTLDNAILILSEL
FRRATFPTLTSRDYMSGIAAAFVVLLRGARHRITAATVPAVIRSVLELLD
SDRLPQNGNEACAVRTAVEYVLHDGVCARVPEGIQLAAARELIMVLSEVV
GSSPPAAGFAPLLNEHQLQVCLVELSHLTHALGQACAALKDSLVGCLCPL
LGHASYGVRFEAAVGLTALGNALPFFAAGLLSRCLQDMARHRETLLAPAP
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mRNA from alignment at P-wetherbeei_contig1153:1913..5385-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1153.1.1 ID=mRNA_P-wetherbeei_contig1153.1.1|Name=mRNA_P-wetherbeei_contig1153.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3473bp|location=Sequence derived from alignment at P-wetherbeei_contig1153:1913..5385- (Phaeothamnion wetherbeei SAG_119_79)
ATTTACTTAACGGAAAAGGATTTTCGTCAATATATCGACATCGAGCACAG GTACAGACGCTTTGCGTGTTCCGCCGTTCTCCGTGGCACGAGTTACCTTC TGAGCAAGATCCTCTGCCGTTCTTTTTGCCCTCACACACTTTCTCACATA CAGGATGAGAAAAGCTTGCTTGTAGGAACATGCAGCTCTCGCCAGGGCGC GCGCAGCGCGCCAATTCTGGCGGCGGTCGCGTCGGATTGGCGCAAACCGC AAAGAAGCTAGGCGACGTGATCCGCGACTCGGATGCCCCGACGCAAGCAA CCCCAGCCGAACGCCTCGCAGCGAGCAGAGCGACCTTCTATTCGCTCAAT GCGTTGACTCGCGCACTGGACGTGACGCAAGGGCCCGGCGGGGCCGAAGC CGGCATCGCAGATCCGATGATGCAAGTGCTGACGACGCAGGAGCTACGTG AGGCCGGAGAGGCCTGCGTGGAGTCGCTGCTGGCGCTGATTGGATGCAAA TCGCTGGAGCTCACCAAGCCCTTCGTGTCGCTTATTACGCAGTGTTTCTG CCAGGTGAGAGATCCCTGCTTGGGAGGGAGAGGACGAATTCCAGGCCTTT CCGATGTCTGTTGCAGATGCATGGTGCGCCGCTTTTGCGTCTGAAGCACG GGATTCGTGCTGTGTATTTGACGGGATTCGGGTTTGTCATGTTGTCTTTG CCTCGTCGAGGGACTGAATGGCATAGCTGCTCTCCGTTGCGGCTAACAAT CTTTCAGAAGATTGCACACAGTAACACTCTACAGCCTCTTATTCTGAAAG AATAGCCTATTCAATGATTATCCGGGGCCCATCTCACGCGTTTTCTTGTT GCGAGAACCGTCGCACAGTATGGCGCACTGACTTCTTGAACACCGCGTTT TGGGCAATCACGGATGGCTGCCCTCTCATAGCTTTCGCCCGTCCGTTGTC CTCTGTCGTTTTACTTAAGAAACATATACCCCGTTCAATGTACCGCTTCC CATTCCAGTTGTTTGAGCGGTGCGAAAGCCTCAACATGGTGAACGCCATC CTGGACATGCAGGCTGTCGCCGAGGCCAAGAAGGCCACCGTCGGGGCCCG CATCGCCGCTGTCACGGCCCAGGGCGCCCTCGCCCGTACCGCCGGCATTC GCATGGTGCGTCGATAGTCGGTGGAGCTTTATGTTTGGGGCGTCGGAGGG TGTGGGGCCCTCGTGACAGCGATGGAATGTACGTACATCATACATCGTTT CATTCTGAGCCCGTTCGTAGCTGTGCCCTTGCCAAACTGGCCACGTTGTT TTCCTTTATCAGAAACCCGGAGAATGATCCTTCTTCTCCTTTCTCTCTCT CTCTCTTTTTGTGTGCCGTGCAGGTCTCGCTCCTGCCGTCGACGTCGGCG GCGCTGGGCCGGCAGGCCAAGTCCTCCGAGCCACACGTCCGCGTGGCGGC GCTATTGGCGCTGCGCGACCTCGTCGATGGCGCGTCGGCGTTCGGTGCCC CCATCAACCCCGAAGTCGTCCGTGTCTGCGTCCGCGCCTGTGCTGACCGC TGCCCAGAGGCGCGCGCTGCGGCGGCGGCAGCGCTGGCCGCAGTCGGGAG CAGTGGCAGCGGCGGCCTCGGTGGCGGCGGCAGCGGCGGCCGGGGCGGCG GCGGCGGCCTGTGGGCTTCCGGCATCAGTGGCACGGGGCTGTCGCCGGCG TTGGAAGCAGTCCTGGCGCCTATCGTCAAGGGGCTGGACGACGAGAGCCC CGGGGTGCGGTTGGCCATGGCGGAGGCGACGGGAGCGGTGCTGGCGGCGG CCGTGGACGGGGCGGCGGCGGAGCGGGACCGCCGTGGCGTCATTGCAGCG CGGGACCAGGACCAGGACGACACCGCCGAGGCGACGGCGGCGCGAGCGGT GGCGCCGCAGAGTCAGATGGACAAGCTGAGCGCCCGCTTCCGCGAGATGA GCCAGGACATGAAGGTGTGCCTTATTTCATGTGTTTTGAAGGAGCAAGAG GTTTATTTAGACTATGTATGTGGTGTTGGGGAGCAAAAAGCAGGTTTGAT ATGGTGGGTGCAGGCAGTGTCTTGCATATTGGCTGCATGCACGTTTTCGC TAGCGGTTCGCTTTTGATTTCCTCGTTTTCTACCGATACCCCTCGTTTTC ATATAGTTTAGCCAGTTCTGGTAACGGTTTTTTTGGAGGTCAGCTGCCGG TGATCAGTTTGGTTGCGCTTACGTTGACGGAACAAGCAGTGTAGACCTTA TACCCCGCATGGACACGCCTGAAATGCCTGCCTGCCTGCCTGGTCGCCTG CCCGCCCGCCCCGCTTACCGCTGTGCAGGTGAGCGTGGGCAAGCTGAGCG ACAAGAAGCTGCCGGCGATCGCGCCGACGACGCTGGACAACGCCATCCTC ATCCTATCGGAGCTGTTCCGCCGCGCCACCTTCCCAACCCTCACCAGCCG CGACTACATGTCGGGCATCGCTGCCGCCTTCGTCGTCCTTCTGCGCGGGG TGAGTCGCAGAGTGTTTAAGTCGCAAATCATCTGGTTGGGTGTCCTACTT CATTGAGCTATGCAATTGCCGCCCTCTCTGTTGTTCCCTACAACGATTAC TACAAAGCACGAAATGCCCTTGCTTCACCTGTCCCGCCCTATCTGCCCAA TCATACCCGCCGCTGATCCGGCCTTTGGCCCCGCGATTGTTGGTGCAAAT CTCGCATCACCAGGCGCGGCACCGCATCACGGCGGCGACAGTGCCGGCCG TCATTCGGTCGGTGCTGGAGCTGCTGGACTCGGACCGACTGCCGCAGAAT GGCAACGAAGCCTGCGCCGTCCGCACAGCTGTCGAGTACGTGCTGCACGA CGGCGTCTGCGCCCGTGTGCCAGAGGGCATCCAGCTGGCGGCGGCGCGCG AGCTCATTATGGTGCTGAGCGAGGTTGTGGGGTCGTCTCCGCCGGCAGCG GGCTTCGCGCCGCTGCTCAACGAACACCAGCTGCAGGTATGTGGGGGATT TGGTTCGTTTTGGGCGTTTGTGGGGTGTTTCTTTTGTTCAGGGAAAAATG CCTTCAATAGAAGACGGCGCGAGGAATGGGTGACCTGCGTTTTGCTGTTG CCTCGTGAGAAAGCGGCCACTGCCTGCGATTTCGAGCTGTTTCCTAGAGA GAGAAAGTTTCTCTTCAACCAACGATGCCCCTTGCTATCCATCCCGCCTC AACAAATGCTCCGCCCATGCCCCCTGGCAGGTGTGCCTTGTGGAGCTGAG CCATCTGACGCACGCCCTCGGCCAGGCCTGCGCCGCCCTCAAAGACTCGC TCGTGGGCTGCCTCTGCCCGCTCCTGGGTCACGCGTCCTACGGCGTCCGC TTCGAAGCGGCCGTCGGCCTCACAGCGCTGGGCAATGCCTTGCCGTTCTT CGCGGCGGGGCTGCTGTCGCGCTGCCTGCAAGACATGGCCCGCCATCGCG AGACGCTGCTGGCGCCAGCGCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1153:1913..5385-

>mRNA_P-wetherbeei_contig1153.1.1 ID=mRNA_P-wetherbeei_contig1153.1.1|Name=mRNA_P-wetherbeei_contig1153.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1800bp|location=Sequence derived from alignment at P-wetherbeei_contig1153:1913..5385- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCTCTCGCCAGGGCGCGCGCAGCGCGCCAATTCTGGCGGCGGTCG
CGTCGGATTGGCGCAAACCGCAAAGAAGCTAGGCGACGTGATCCGCGACT
CGGATGCCCCGACGCAAGCAACCCCAGCCGAACGCCTCGCAGCGAGCAGA
GCGACCTTCTATTCGCTCAATGCGTTGACTCGCGCACTGGACGTGACGCA
AGGGCCCGGCGGGGCCGAAGCCGGCATCGCAGATCCGATGATGCAAGTGC
TGACGACGCAGGAGCTACGTGAGGCCGGAGAGGCCTGCGTGGAGTCGCTG
CTGGCGCTGATTGGATGCAAATCGCTGGAGCTCACCAAGCCCTTCGTGTC
GCTTATTACGCAGTGTTTCTGCCAGTTGTTTGAGCGGTGCGAAAGCCTCA
ACATGGTGAACGCCATCCTGGACATGCAGGCTGTCGCCGAGGCCAAGAAG
GCCACCGTCGGGGCCCGCATCGCCGCTGTCACGGCCCAGGGCGCCCTCGC
CCGTACCGCCGGCATTCGCATGGTCTCGCTCCTGCCGTCGACGTCGGCGG
CGCTGGGCCGGCAGGCCAAGTCCTCCGAGCCACACGTCCGCGTGGCGGCG
CTATTGGCGCTGCGCGACCTCGTCGATGGCGCGTCGGCGTTCGGTGCCCC
CATCAACCCCGAAGTCGTCCGTGTCTGCGTCCGCGCCTGTGCTGACCGCT
GCCCAGAGGCGCGCGCTGCGGCGGCGGCAGCGCTGGCCGCAGTCGGGAGC
AGTGGCAGCGGCGGCCTCGGTGGCGGCGGCAGCGGCGGCCGGGGCGGCGG
CGGCGGCCTGTGGGCTTCCGGCATCAGTGGCACGGGGCTGTCGCCGGCGT
TGGAAGCAGTCCTGGCGCCTATCGTCAAGGGGCTGGACGACGAGAGCCCC
GGGGTGCGGTTGGCCATGGCGGAGGCGACGGGAGCGGTGCTGGCGGCGGC
CGTGGACGGGGCGGCGGCGGAGCGGGACCGCCGTGGCGTCATTGCAGCGC
GGGACCAGGACCAGGACGACACCGCCGAGGCGACGGCGGCGCGAGCGGTG
GCGCCGCAGAGTCAGATGGACAAGCTGAGCGCCCGCTTCCGCGAGATGAG
CCAGGACATGAAGGTGAGCGTGGGCAAGCTGAGCGACAAGAAGCTGCCGG
CGATCGCGCCGACGACGCTGGACAACGCCATCCTCATCCTATCGGAGCTG
TTCCGCCGCGCCACCTTCCCAACCCTCACCAGCCGCGACTACATGTCGGG
CATCGCTGCCGCCTTCGTCGTCCTTCTGCGCGGGGCGCGGCACCGCATCA
CGGCGGCGACAGTGCCGGCCGTCATTCGGTCGGTGCTGGAGCTGCTGGAC
TCGGACCGACTGCCGCAGAATGGCAACGAAGCCTGCGCCGTCCGCACAGC
TGTCGAGTACGTGCTGCACGACGGCGTCTGCGCCCGTGTGCCAGAGGGCA
TCCAGCTGGCGGCGGCGCGCGAGCTCATTATGGTGCTGAGCGAGGTTGTG
GGGTCGTCTCCGCCGGCAGCGGGCTTCGCGCCGCTGCTCAACGAACACCA
GCTGCAGGTGTGCCTTGTGGAGCTGAGCCATCTGACGCACGCCCTCGGCC
AGGCCTGCGCCGCCCTCAAAGACTCGCTCGTGGGCTGCCTCTGCCCGCTC
CTGGGTCACGCGTCCTACGGCGTCCGCTTCGAAGCGGCCGTCGGCCTCAC
AGCGCTGGGCAATGCCTTGCCGTTCTTCGCGGCGGGGCTGCTGTCGCGCT
GCCTGCAAGACATGGCCCGCCATCGCGAGACGCTGCTGGCGCCAGCGCCA
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