mRNA_P-wetherbeei_contig11518.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11518.5.1
Unique NamemRNA_P-wetherbeei_contig11518.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11518.5.1 vs. uniprot
Match: A0A6B2EHB1_9DIPT (Putative secreted protein (Fragment) n=1 Tax=Phlebotomus kandelakii TaxID=1109342 RepID=A0A6B2EHB1_9DIPT)

HSP 1 Score: 189 bits (480), Expect = 4.980e-59
Identity = 90/110 (81.82%), Postives = 94/110 (85.45%), Query Frame = 2
Query:   74 GFRYCFTPLIGVLFTFPSRYWFTIGHVRVFRLGGWSPHVQTEFHVLRPTQVLRYHFRIRGCHPLWRPFPETSANYIPGAGLVRVRSPLLTESRLMSFPPGTEMFQFSGFA 403
            GFRYCFTPLIGVLFTFPSRY FTIGH RVFRL GWSP+VQT  HV RPTQVL +HFRIRGCHPLW  FP+ SAN   G GLVRVRSPLL ESRLMSFPP TEMFQF+GFA
Sbjct:    1 GFRYCFTPLIGVLFTFPSRYLFTIGHARVFRLRGWSPYVQTGLHVSRPTQVLMFHFRIRGCHPLWPDFPDCSANSPSGTGLVRVRSPLLAESRLMSFPPATEMFQFAGFA 110          
BLAST of mRNA_P-wetherbeei_contig11518.5.1 vs. uniprot
Match: A0A6G5ADV0_RHIMP (Uncharacterized protein (Fragment) n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G5ADV0_RHIMP)

HSP 1 Score: 133 bits (335), Expect = 8.910e-37
Identity = 72/108 (66.67%), Postives = 75/108 (69.44%), Query Frame = 2
Query:   68 ASGFRYCFTPLIGVLFTFPSRYWFTIGHVRVFRLGGWSPHVQTEFHVLRPTQVLRYHFRIRGCHPLWRPFPETSANYIPGAGLVRVRSPLLTESRLMSFPPGTEMFQF 391
            AS FR CFTPL+GVLFTFPSRY FTIG   V RLGGWSPHVQT FHV RPT+V        G  P    FP  S  +    GLV VRSPLL ESRLMSFPPGTEMFQF
Sbjct:    1 ASDFRICFTPLVGVLFTFPSRYLFTIGRRGVLRLGGWSPHVQTGFHVSRPTRVSCC-LTSTGLSPAMADFPFRSTLFHKSTGLVPVRSPLLRESRLMSFPPGTEMFQF 107          
BLAST of mRNA_P-wetherbeei_contig11518.5.1 vs. uniprot
Match: H6SIC1_PARPM (Uncharacterized protein (Fragment) n=1 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIC1_PARPM)

HSP 1 Score: 131 bits (329), Expect = 3.290e-36
Identity = 62/80 (77.50%), Postives = 66/80 (82.50%), Query Frame = 3
Query:   54 PTACRHPVSGTVSLPSSGCFSPFPHGTGSLSVMYEYLGLEGGPPMFRQSFTCSALLKS*DIIFAYGAVTRYGVPFQRLLL 293
            PTACRHPVSGTVSLPSSGCFSPFPHGTGSLSV+ EYL LEGGPPMFRQ FTC ALLK   +   YGAVTR G PF  +L+
Sbjct:   17 PTACRHPVSGTVSLPSSGCFSPFPHGTGSLSVVKEYLALEGGPPMFRQGFTCPALLKDLKVQHPYGAVTRCGRPFHAVLV 96          
BLAST of mRNA_P-wetherbeei_contig11518.5.1 vs. uniprot
Match: A0A1U9RKS3_9PROT (Uncharacterized protein n=1 Tax=Komagataeibacter nataicola TaxID=265960 RepID=A0A1U9RKS3_9PROT)

HSP 1 Score: 128 bits (322), Expect = 2.560e-35
Identity = 65/90 (72.22%), Postives = 68/90 (75.56%), Query Frame = 2
Query:  107 VLFTFPSRYWFTIGHVRVFRLGGWSPHVQTEFHVLRPTQVLRYHFRIRGCHPLWRPFPETSANYIPGAGLVRVRSPLLTESRLMSFPPGT 376
            +LFTFPSRY FTIGH  VFRLGGWSPHVQT FHV RPTQ L    RIRG HPLW  FP  SA+     GL RVRSPLL ES+LMSFPPGT
Sbjct:    1 MLFTFPSRYLFTIGHQGVFRLGGWSPHVQTGFHVSRPTQGLFLTLRIRGYHPLWPDFPFRSASSKTATGLFRVRSPLLAESQLMSFPPGT 90          
BLAST of mRNA_P-wetherbeei_contig11518.5.1 vs. uniprot
Match: N9CSC5_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Acinetobacter towneri DSM 14962 = CIP 107472 TaxID=1120929 RepID=N9CSC5_9GAMM)

HSP 1 Score: 129 bits (324), Expect = 1.150e-34
Identity = 82/171 (47.95%), Postives = 92/171 (53.80%), Query Frame = 2
Query:   89 FTPLIGVLFTFPSRYWFTIGHVRVFRLGGWSPHVQTEFHVLRPTQVLRYH-----------FRIRGCHPLWRPFPETSANYIPGAGLVRVRSPLLTESRLMSFPPGTEMFQFSGFASPKPI-LFSLVGY-----PIRKSRDQSLLTAPPRLSQRATSFIACTCQGIHQMPL 550
            FTPL GVLF FPSRYWFTIG   VF LGGWSPH+QT FHV RPT   R+H             +R    +  P   T  N     GL   RSPLL ES+L+SFP GTEMF F  FA    + +   + Y     P R  R +  L  P   SQ  TSFIA  CQGIH M L
Sbjct:    2 FTPLTGVLFAFPSRYWFTIGQSGVFSLGGWSPHIQTRFHVPRPT---RHHCVCPFVYGNITLYVRTSQSV--PLEHTQLN-----GLFPFRSPLLRESQLISFPKGTEMFHFPSFALHDYVFIMQYLSYDKWVSPFRHLRIKGYLPPPRSFSQAITSFIASDCQGIHHMHL 162          
BLAST of mRNA_P-wetherbeei_contig11518.5.1 vs. uniprot
Match: D4BE78_9ENTR (Uncharacterized protein n=1 Tax=Citrobacter youngae ATCC 29220 TaxID=500640 RepID=D4BE78_9ENTR)

HSP 1 Score: 124 bits (310), Expect = 2.930e-33
Identity = 65/105 (61.90%), Postives = 74/105 (70.48%), Query Frame = 2
Query:   74 GFRYCFTPLIGVLFTFPSRYWFTIGHVRVFRLGGWSPHVQTEFHVLRPTQVLR--YHFRIRGCHPLWRPFPETSANYIP--GAGLVRVRSPLLTESRLMSFPPGT 376
            GFR+ FTPL GVLF FPSRYWFTIG   VF LGGWSPH+QT +HV RPT       HF +RG HP+   FP+ S N     G+GL+ VRSPLL ESRL+SFP GT
Sbjct:    5 GFRFFFTPLAGVLFAFPSRYWFTIGQSGVFSLGGWSPHIQTGYHVSRPTLRAHNHVHFCVRGYHPVPSAFPDRSTNTHADSGSGLLPVRSPLLGESRLISFPRGT 109          
BLAST of mRNA_P-wetherbeei_contig11518.5.1 vs. uniprot
Match: A0A2S2PQL9_SCHGA (Uncharacterized protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2PQL9_SCHGA)

HSP 1 Score: 119 bits (298), Expect = 2.660e-30
Identity = 57/73 (78.08%), Postives = 59/73 (80.82%), Query Frame = 3
Query:    3 KSQTHYARGTRSGLKDPPTACRHPVSGTVSLPSSGCFSPFPHGTGSLSVMYEYLGLEGGPPMFRQSFTCSALL 221
            KS THY +GT S LK  PTACR PVS TVSLPSSGCFSPFPHGTGSLSV  EYL  EGGPP+FRQ FTC ALL
Sbjct:    8 KSLTHYTKGTPSPLKGAPTACRRPVSETVSLPSSGCFSPFPHGTGSLSVSKEYLAFEGGPPIFRQDFTCPALL 80          
BLAST of mRNA_P-wetherbeei_contig11518.5.1 vs. uniprot
Match: Q3BKI1_9PROT (Uncharacterized protein n=2 Tax=Magnetospirillum gryphiswaldense TaxID=55518 RepID=Q3BKI1_9PROT)

HSP 1 Score: 119 bits (297), Expect = 1.530e-29
Identity = 57/74 (77.03%), Postives = 59/74 (79.73%), Query Frame = 3
Query:    6 SQTHYARGTRSGLKDPPTACRHPVSGTVSLPSSGCFSPFPHGTGSLSVMYEYLGLEGGPPMFRQSFTCSALLKS 227
            S THY +GT S  K  PTACRH VSGTVSLP SGCFSPFPHGT SLSV  EYLGLE GPPMFRQ FTC ALLK+
Sbjct:   69 SLTHYTKGTPSPFKRAPTACRHSVSGTVSLPLSGCFSPFPHGTSSLSVTEEYLGLEDGPPMFRQDFTCPALLKA 142          
BLAST of mRNA_P-wetherbeei_contig11518.5.1 vs. uniprot
Match: A0A6A5L4G5_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L4G5_LUPAL)

HSP 1 Score: 124 bits (311), Expect = 1.760e-29
Identity = 58/73 (79.45%), Postives = 62/73 (84.93%), Query Frame = 3
Query:    3 KSQTHYARGTRSGLKDPPTACRHPVSGTVSLPSSGCFSPFPHGTGSLSVMYEYLGLEGGPPMFRQSFTCSALL 221
            KS THY +GT S  ++ PTACRHPVSGTVSLP SGCFSPFPHGTG+LSV  EYLGLEGGPPMFRQ FTC ALL
Sbjct:   26 KSLTHYTKGTPSPHEEAPTACRHPVSGTVSLPLSGCFSPFPHGTGALSVTEEYLGLEGGPPMFRQGFTCPALL 98          
BLAST of mRNA_P-wetherbeei_contig11518.5.1 vs. uniprot
Match: UPI001A08AA19 (Uncharacterized protein n=1 Tax=Pseudorhizobium halotolerans TaxID=1233081 RepID=UPI001A08AA19)

HSP 1 Score: 118 bits (295), Expect = 2.040e-29
Identity = 57/74 (77.03%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 KSQTHYARGTRSGLKDPPTACRHPVSGTVSLPSSGCFSPFPHGTGSLSVMYEYLGLEGGPPMFRQSFTCSALLK 224
            KS THY +GT S L+ P T CRHPVSG++SLPSSGCFSPFPHGT SLSVM+EYLGLE G PMFRQ FTC ALLK
Sbjct:   53 KSLTHYTKGTPSPLRAP-TVCRHPVSGSISLPSSGCFSPFPHGTCSLSVMHEYLGLESGLPMFRQDFTCPALLK 125          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11518.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B2EHB1_9DIPT4.980e-5981.82Putative secreted protein (Fragment) n=1 Tax=Phleb... [more]
A0A6G5ADV0_RHIMP8.910e-3766.67Uncharacterized protein (Fragment) n=1 Tax=Rhipice... [more]
H6SIC1_PARPM3.290e-3677.50Uncharacterized protein (Fragment) n=1 Tax=Pararho... [more]
A0A1U9RKS3_9PROT2.560e-3572.22Uncharacterized protein n=1 Tax=Komagataeibacter n... [more]
N9CSC5_9GAMM1.150e-3447.95Uncharacterized protein (Fragment) n=1 Tax=Acineto... [more]
D4BE78_9ENTR2.930e-3361.90Uncharacterized protein n=1 Tax=Citrobacter younga... [more]
A0A2S2PQL9_SCHGA2.660e-3078.08Uncharacterized protein (Fragment) n=1 Tax=Schizap... [more]
Q3BKI1_9PROT1.530e-2977.03Uncharacterized protein n=2 Tax=Magnetospirillum g... [more]
A0A6A5L4G5_LUPAL1.760e-2979.45Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
UPI001A08AA192.040e-2977.03Uncharacterized protein n=1 Tax=Pseudorhizobium ha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11518contigP-wetherbeei_contig11518:664..1311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1150469.RSPPHO_03264
Model size587
Max annot lvl2|Bacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue9.95e-14
EggNOG OGs2EBGV@1|root,335HF@2|Bacteria
Cds size147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185915.0359583-UTR-P-wetherbeei_contig11518:663..8201683185915.0359583-UTR-P-wetherbeei_contig11518:663..820Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11518 664..820 -
1683185915.0460498-UTR-P-wetherbeei_contig11518:881..11461683185915.0460498-UTR-P-wetherbeei_contig11518:881..1146Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11518 882..1146 -
1683185915.0667572-UTR-P-wetherbeei_contig11518:1293..13111683185915.0667572-UTR-P-wetherbeei_contig11518:1293..1311Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11518 1294..1311 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185915.057873-CDS-P-wetherbeei_contig11518:1146..12931683185915.057873-CDS-P-wetherbeei_contig11518:1146..1293Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11518 1147..1293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11518.5.1prot_P-wetherbeei_contig11518.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11518 1147..1293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11518.5.1

>prot_P-wetherbeei_contig11518.5.1 ID=prot_P-wetherbeei_contig11518.5.1|Name=mRNA_P-wetherbeei_contig11518.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=49bp
MQEVRGQVSRTLPLLVGIRFQVLFHSPHRGAFHLSLTVLVHYRSCTSI*
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mRNA from alignment at P-wetherbeei_contig11518:664..1311-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11518.5.1 ID=mRNA_P-wetherbeei_contig11518.5.1|Name=mRNA_P-wetherbeei_contig11518.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=648bp|location=Sequence derived from alignment at P-wetherbeei_contig11518:664..1311- (Phaeothamnion wetherbeei SAG_119_79)
CTAAGTCACAGACCCATTATGCAAGAGGTACGCGGTCAGGTCTCAAGGAC CCTCCCACTGCTTGTAGGCATCCGGTTTCAGGTACTGTTTCACTCCCCTC ATCGGGGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCA TGTACGAGTATTTAGGCTTGGAGGGTGGTCCCCCCATGTTCAGACAGAGT TTCACGTGCTCCGCCCTACTCAAGTCCTGAGATATCATTTTCGCATACGG GGCTGTCACCCGCTATGGCGTCCCTTTCCAGAGACTTCTGCTAATTATAT CCCAGGCGCTGGCCTGGTCCGCGTTCGCTCGCCACTACTAACGGAATCTC GGTTGATGTCTTTTCCTCCGGGTACTGAGATGTTTCAGTTCTCCGGGTTC GCTTCACCAAAGCCTATTTTATTCAGCTTAGTGATACCTCTCCCATTTAA CACGGATCCTGATTGCTCAGGACCAGTCTTAAATGGTGAAGGTGGGTTAT CCCATTCGGAAATCGCGGGATCAAAGCCTGCTCACGGCTCCCCCACGCTT ATCGCAGCGTGCCACGTCCTTCATCGCCTGTACATGCCAAGGCATTCACC AGATGCCCTTACCTCACGCTTGAGAGTCCACACCACCAACGACAATAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11518:664..1311-

>mRNA_P-wetherbeei_contig11518.5.1 ID=mRNA_P-wetherbeei_contig11518.5.1|Name=mRNA_P-wetherbeei_contig11518.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig11518:664..1311- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAGAGGTACGCGGTCAGGTCTCAAGGACCCTCCCACTGCTTGTAGG
CATCCGGTTTCAGGTACTGTTTCACTCCCCTCATCGGGGTGCTTTTCACC
TTTCCCTCACGGTACTGGTTCACTATCGGTCATGTACGAGTATTTAG
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