mRNA_P-wetherbeei_contig11518.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11518.2.1
Unique NamemRNA_P-wetherbeei_contig11518.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: A0A6A5L7H6_LUPAL (Uncharacterized protein ycf68 (Fragment) n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L7H6_LUPAL)

HSP 1 Score: 92.4 bits (228), Expect = 1.460e-20
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 1
Query:  103 VTLWLERTPDKREVGGSTPPRPTSNMVRGFSSAGRAVALQASGHRFDPDKLH 258
            VT WLERTPDKREVG STPPRPT    RG SSAGRAVALQASGHRFDPD+LH
Sbjct:  191 VTRWLERTPDKREVGSSTPPRPTIVHGRGLSSAGRAVALQASGHRFDPDRLH 242          
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: A0A1R3KWN9_9ROSI (Uncharacterized protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3KWN9_9ROSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.380e-16
Identity = 45/90 (50.00%), Postives = 51/90 (56.67%), Query Frame = 1
Query:    1 RDESANACRWKSFVISKEHCRRPHVPSSLEISATVTLWLERTPDKREVGGSTPPRPTSNMVR----GFSSAGRAVALQASGHRFDPDKLH 258
            R+ +A A   KSF  SKEHCRRPHVPSS   +      L R   +        PRP   +      G S AGRAVALQASGHRFDPD+LH
Sbjct:   27 RNHTAGASHRKSFAPSKEHCRRPHVPSSWRYTVCCVFCLSRHVCR--------PRPIGLLGAKDWAGSSGAGRAVALQASGHRFDPDRLH 108          
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: A0A2N9AVJ8_METEX (Uncharacterized protein n=1 Tax=Methylorubrum extorquens TaxID=408 RepID=A0A2N9AVJ8_METEX)

HSP 1 Score: 70.1 bits (170), Expect = 6.570e-14
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = -2
Query:  111 WSLSGSNR*PDACKATALPAELKPLTMLLVGRGGVEPPTSRLSGVRSNH 257
            W  +GSNR PDACKATALPAEL+PL M  VG G +E PTS LSGVRSNH
Sbjct:   40 WRRTGSNRRPDACKATALPAELRPLIM--VGLGRLERPTSPLSGVRSNH 86          
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: A0A2P9AWM1_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium delmotii TaxID=1631247 RepID=A0A2P9AWM1_9HYPH)

HSP 1 Score: 67.4 bits (163), Expect = 4.010e-13
Identity = 37/62 (59.68%), Postives = 40/62 (64.52%), Query Frame = -3
Query:  113 GAYRDRTDDLMLAKQPLSQLS*SPS-------PCC-------WWAGEELNLRPHAYQACALT 256
            GA RDRTDD++LAKQ LSQLS  P        PC        WWA E+LNLRPHAYQA ALT
Sbjct:    6 GAGRDRTDDILLAKQALSQLSYGPLITPLRSYPCLRAPLVEEWWAWEDLNLRPHAYQARALT 67          
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: A0A8J8NAD6_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NAD6_HALGN)

HSP 1 Score: 67.8 bits (164), Expect = 6.860e-13
Identity = 35/49 (71.43%), Postives = 35/49 (71.43%), Query Frame = -3
Query:  110 GAYRDRTDDLMLAKQPLSQLS*SPSPCCWWAGEELNLRPHAYQACALTT 256
            GA R RTDDL LAK  LSQLS SP     WA  ELN RPHAYQACALTT
Sbjct:   55 GADRGRTDDLRLAKPALSQLSYSPEMVSEWAQLELNQRPHAYQACALTT 103          
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: G8ASS5_9PROT (Uncharacterized protein n=1 Tax=Azospirillum baldaniorum TaxID=1064539 RepID=G8ASS5_9PROT)

HSP 1 Score: 59.3 bits (142), Expect = 9.410e-10
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 2
Query:  128 LISVRSEVQLLPGPPATW*------GALAQLGERLLCKHQVIGSIPISS 256
            +ISVRSEVQ+LPGPP          G +AQLGERLLCK +V+GSIP +S
Sbjct:    1 MISVRSEVQILPGPPPIRRHRTHRHGGIAQLGERLLCKQEVVGSIPSAS 49          
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: A0A0Q0A3Q4_PSEAQ (Uncharacterized protein n=15 Tax=Pseudomonas syringae group TaxID=136849 RepID=A0A0Q0A3Q4_PSEAQ)

HSP 1 Score: 54.3 bits (129), Expect = 6.100e-8
Identity = 28/54 (51.85%), Postives = 31/54 (57.41%), Query Frame = -3
Query:  113 GAYRDRTDDLMLAKQPLSQLS*SP------SPCCWWAGEELNLRPHAYQACALT 256
            GA RDRT DL+ A+Q LSQLS  P          WW   + N RPH YQ CALT
Sbjct:   16 GAKRDRTADLLRARQALSQLSYGPVFLQAFPTQNWWVWADSNCRPHPYQGCALT 69          
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: A0A3M5VQZ8_PSESX (Uncharacterized protein n=1 Tax=Pseudomonas syringae pv. avii TaxID=663959 RepID=A0A3M5VQZ8_PSESX)

HSP 1 Score: 53.9 bits (128), Expect = 1.320e-7
Identity = 28/54 (51.85%), Postives = 31/54 (57.41%), Query Frame = -3
Query:  113 GAYRDRTDDLMLAKQPLSQLS*SP------SPCCWWAGEELNLRPHAYQACALT 256
            GA RDRT DL+ A+Q LSQLS  P          WW   + N RPH YQ CALT
Sbjct:   34 GAKRDRTVDLLRARQALSQLSYGPVFLQAFPTQNWWVWADSNCRPHPYQGCALT 87          
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: A0A3M5MU35_PSEAZ (Uncharacterized protein (Fragment) n=2 Tax=Pseudomonas fluorescens group TaxID=136843 RepID=A0A3M5MU35_PSEAZ)

HSP 1 Score: 53.9 bits (128), Expect = 1.380e-7
Identity = 28/54 (51.85%), Postives = 31/54 (57.41%), Query Frame = -3
Query:  113 GAYRDRTDDLMLAKQPLSQLS*SP------SPCCWWAGEELNLRPHAYQACALT 256
            GA RDRT DL+ A+Q LSQLS  P          WW   + N RPH YQ CALT
Sbjct:   36 GAKRDRTVDLLRARQALSQLSYGPVFLQAFPTQNWWVWADSNCRPHPYQGCALT 89          
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: E0XV88_9RHOB (Uncharacterized protein n=1 Tax=uncultured Rhodobacterales bacterium HF4000_03E16 TaxID=710785 RepID=E0XV88_9RHOB)

HSP 1 Score: 52.8 bits (125), Expect = 5.470e-7
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = -2
Query:  111 CKATALPAELKPLTMLLVGRGGVEPPTSRLSGVRSNH 221
            C+A   P+   P  M LVGRGG+EPPTSRLSGVRSNH
Sbjct:   42 CQALPRPSFSPPAKMTLVGRGGLEPPTSRLSGVRSNH 78          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6A5L7H6_LUPAL1.460e-2084.62Uncharacterized protein ycf68 (Fragment) n=1 Tax=L... [more]
A0A1R3KWN9_9ROSI1.380e-1650.00Uncharacterized protein n=1 Tax=Corchorus olitoriu... [more]
A0A2N9AVJ8_METEX6.570e-1473.47Uncharacterized protein n=1 Tax=Methylorubrum exto... [more]
A0A2P9AWM1_9HYPH4.010e-1359.68Uncharacterized protein n=1 Tax=Mesorhizobium delm... [more]
A0A8J8NAD6_HALGN6.860e-1371.43Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
G8ASS5_9PROT9.410e-1061.22Uncharacterized protein n=1 Tax=Azospirillum balda... [more]
A0A0Q0A3Q4_PSEAQ6.100e-851.85Uncharacterized protein n=15 Tax=Pseudomonas syrin... [more]
A0A3M5VQZ8_PSESX1.320e-751.85Uncharacterized protein n=1 Tax=Pseudomonas syring... [more]
A0A3M5MU35_PSEAZ1.380e-751.85Uncharacterized protein (Fragment) n=2 Tax=Pseudom... [more]
E0XV88_9RHOB5.470e-767.57Uncharacterized protein n=1 Tax=uncultured Rhodoba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11518contigP-wetherbeei_contig11518:80..412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5911.EAR84078
PFAMsHis_Phos_2
Model size258
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K01078,ko:K14410,ko:K19283
KEGG ReactionR00548,R02135,R11527
KEGG Pathwayko00730,ko00740,ko01100,ko04142,map00730,map00740,map01100,map04142
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.3e-07
EggNOG OGsCOG1404@1|root,KOG3720@1|root,KOG3525@2759|Eukaryota,KOG3720@2759|Eukaryota,3ZDRZ@5878|Ciliophora
EC3.1.3.2,3.1.3.5
Descriptiondomain containing protein
Cds size258
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185914.9533267-CDS-P-wetherbeei_contig11518:79..1891683185914.9533267-CDS-P-wetherbeei_contig11518:79..189Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11518 80..189 +
1683185914.9636014-CDS-P-wetherbeei_contig11518:264..4121683185914.9636014-CDS-P-wetherbeei_contig11518:264..412Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11518 265..412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11518.2.1prot_P-wetherbeei_contig11518.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11518 80..412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11518.2.1

>prot_P-wetherbeei_contig11518.2.1 ID=prot_P-wetherbeei_contig11518.2.1|Name=mRNA_P-wetherbeei_contig11518.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
RDESANACRWKSFVISKEHCRRPHVPSSLEISATVTLWLERTPDKREVGG
STPPRPTSNMVRGFSSAGRAVALQASGHRFDPDKLH
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mRNA from alignment at P-wetherbeei_contig11518:80..412+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11518.2.1 ID=mRNA_P-wetherbeei_contig11518.2.1|Name=mRNA_P-wetherbeei_contig11518.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig11518:80..412+ (Phaeothamnion wetherbeei SAG_119_79)
CGTGACGAAAGCGCCAACGCTTGCCGTTGGAAGAGCTTCGTCATTTCCAA AGAACATTGCCGCCGTCCTCATGTCCCTTCATCACTAGAGATTAGCGCAA CGGTAACGTTGTGCTGATAGCTGAGCAGGCTCAAGCGCCTCTGGCTGCTA ACGCAGCCTGATTGGCAGCTGGGCCGGTAGCTCAGGTGGTTAGAGCGCAC GCCTGATAAGCGTGAGGTCGGAGGTTCAACTCCTCCCCGGCCCACCAGCA ACATGGTGAGGGGCTTTAGCTCAGCTGGGAGAGCGGTTGCTTTGCAAGCA TCAGGTCATCGGTTCGATCCCGATAAGCTCCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11518:80..412+

>mRNA_P-wetherbeei_contig11518.2.1 ID=mRNA_P-wetherbeei_contig11518.2.1|Name=mRNA_P-wetherbeei_contig11518.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig11518:80..412+ (Phaeothamnion wetherbeei SAG_119_79)
CGTGACGAAAGCGCCAACGCTTGCCGTTGGAAGAGCTTCGTCATTTCCAA
AGAACATTGCCGCCGTCCTCATGTCCCTTCATCACTAGAGATTAGCGCAA
CGGTAACGTTGTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGAGGT
TCAACTCCTCCCCGGCCCACCAGCAACATGGTGAGGGGCTTTAGCTCAGC
TGGGAGAGCGGTTGCTTTGCAAGCATCAGGTCATCGGTTCGATCCCGATA
AGCTCCAC
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