mRNA_P-wetherbeei_contig11518.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: A0A6A5L7H6_LUPAL (Uncharacterized protein ycf68 (Fragment) n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L7H6_LUPAL) HSP 1 Score: 92.4 bits (228), Expect = 1.460e-20 Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 1 Query: 103 VTLWLERTPDKREVGGSTPPRPTSNMVRGFSSAGRAVALQASGHRFDPDKLH 258 VT WLERTPDKREVG STPPRPT RG SSAGRAVALQASGHRFDPD+LH Sbjct: 191 VTRWLERTPDKREVGSSTPPRPTIVHGRGLSSAGRAVALQASGHRFDPDRLH 242
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: A0A1R3KWN9_9ROSI (Uncharacterized protein n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3KWN9_9ROSI) HSP 1 Score: 78.2 bits (191), Expect = 1.380e-16 Identity = 45/90 (50.00%), Postives = 51/90 (56.67%), Query Frame = 1 Query: 1 RDESANACRWKSFVISKEHCRRPHVPSSLEISATVTLWLERTPDKREVGGSTPPRPTSNMVR----GFSSAGRAVALQASGHRFDPDKLH 258 R+ +A A KSF SKEHCRRPHVPSS + L R + PRP + G S AGRAVALQASGHRFDPD+LH Sbjct: 27 RNHTAGASHRKSFAPSKEHCRRPHVPSSWRYTVCCVFCLSRHVCR--------PRPIGLLGAKDWAGSSGAGRAVALQASGHRFDPDRLH 108
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: A0A2N9AVJ8_METEX (Uncharacterized protein n=1 Tax=Methylorubrum extorquens TaxID=408 RepID=A0A2N9AVJ8_METEX) HSP 1 Score: 70.1 bits (170), Expect = 6.570e-14 Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = -2 Query: 111 WSLSGSNR*PDACKATALPAELKPLTMLLVGRGGVEPPTSRLSGVRSNH 257 W +GSNR PDACKATALPAEL+PL M VG G +E PTS LSGVRSNH Sbjct: 40 WRRTGSNRRPDACKATALPAELRPLIM--VGLGRLERPTSPLSGVRSNH 86
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: A0A2P9AWM1_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium delmotii TaxID=1631247 RepID=A0A2P9AWM1_9HYPH) HSP 1 Score: 67.4 bits (163), Expect = 4.010e-13 Identity = 37/62 (59.68%), Postives = 40/62 (64.52%), Query Frame = -3 Query: 113 GAYRDRTDDLMLAKQPLSQLS*SPS-------PCC-------WWAGEELNLRPHAYQACALT 256 GA RDRTDD++LAKQ LSQLS P PC WWA E+LNLRPHAYQA ALT Sbjct: 6 GAGRDRTDDILLAKQALSQLSYGPLITPLRSYPCLRAPLVEEWWAWEDLNLRPHAYQARALT 67
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: A0A8J8NAD6_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NAD6_HALGN) HSP 1 Score: 67.8 bits (164), Expect = 6.860e-13 Identity = 35/49 (71.43%), Postives = 35/49 (71.43%), Query Frame = -3 Query: 110 GAYRDRTDDLMLAKQPLSQLS*SPSPCCWWAGEELNLRPHAYQACALTT 256 GA R RTDDL LAK LSQLS SP WA ELN RPHAYQACALTT Sbjct: 55 GADRGRTDDLRLAKPALSQLSYSPEMVSEWAQLELNQRPHAYQACALTT 103
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: G8ASS5_9PROT (Uncharacterized protein n=1 Tax=Azospirillum baldaniorum TaxID=1064539 RepID=G8ASS5_9PROT) HSP 1 Score: 59.3 bits (142), Expect = 9.410e-10 Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 2 Query: 128 LISVRSEVQLLPGPPATW*------GALAQLGERLLCKHQVIGSIPISS 256 +ISVRSEVQ+LPGPP G +AQLGERLLCK +V+GSIP +S Sbjct: 1 MISVRSEVQILPGPPPIRRHRTHRHGGIAQLGERLLCKQEVVGSIPSAS 49
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: A0A0Q0A3Q4_PSEAQ (Uncharacterized protein n=15 Tax=Pseudomonas syringae group TaxID=136849 RepID=A0A0Q0A3Q4_PSEAQ) HSP 1 Score: 54.3 bits (129), Expect = 6.100e-8 Identity = 28/54 (51.85%), Postives = 31/54 (57.41%), Query Frame = -3 Query: 113 GAYRDRTDDLMLAKQPLSQLS*SP------SPCCWWAGEELNLRPHAYQACALT 256 GA RDRT DL+ A+Q LSQLS P WW + N RPH YQ CALT Sbjct: 16 GAKRDRTADLLRARQALSQLSYGPVFLQAFPTQNWWVWADSNCRPHPYQGCALT 69
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: A0A3M5VQZ8_PSESX (Uncharacterized protein n=1 Tax=Pseudomonas syringae pv. avii TaxID=663959 RepID=A0A3M5VQZ8_PSESX) HSP 1 Score: 53.9 bits (128), Expect = 1.320e-7 Identity = 28/54 (51.85%), Postives = 31/54 (57.41%), Query Frame = -3 Query: 113 GAYRDRTDDLMLAKQPLSQLS*SP------SPCCWWAGEELNLRPHAYQACALT 256 GA RDRT DL+ A+Q LSQLS P WW + N RPH YQ CALT Sbjct: 34 GAKRDRTVDLLRARQALSQLSYGPVFLQAFPTQNWWVWADSNCRPHPYQGCALT 87
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: A0A3M5MU35_PSEAZ (Uncharacterized protein (Fragment) n=2 Tax=Pseudomonas fluorescens group TaxID=136843 RepID=A0A3M5MU35_PSEAZ) HSP 1 Score: 53.9 bits (128), Expect = 1.380e-7 Identity = 28/54 (51.85%), Postives = 31/54 (57.41%), Query Frame = -3 Query: 113 GAYRDRTDDLMLAKQPLSQLS*SP------SPCCWWAGEELNLRPHAYQACALT 256 GA RDRT DL+ A+Q LSQLS P WW + N RPH YQ CALT Sbjct: 36 GAKRDRTVDLLRARQALSQLSYGPVFLQAFPTQNWWVWADSNCRPHPYQGCALT 89
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Match: E0XV88_9RHOB (Uncharacterized protein n=1 Tax=uncultured Rhodobacterales bacterium HF4000_03E16 TaxID=710785 RepID=E0XV88_9RHOB) HSP 1 Score: 52.8 bits (125), Expect = 5.470e-7 Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = -2 Query: 111 CKATALPAELKPLTMLLVGRGGVEPPTSRLSGVRSNH 221 C+A P+ P M LVGRGG+EPPTSRLSGVRSNH Sbjct: 42 CQALPRPSFSPPAKMTLVGRGGLEPPTSRLSGVRSNH 78 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11518.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig11518.2.1 >prot_P-wetherbeei_contig11518.2.1 ID=prot_P-wetherbeei_contig11518.2.1|Name=mRNA_P-wetherbeei_contig11518.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp RDESANACRWKSFVISKEHCRRPHVPSSLEISATVTLWLERTPDKREVGGback to top mRNA from alignment at P-wetherbeei_contig11518:80..412+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig11518.2.1 ID=mRNA_P-wetherbeei_contig11518.2.1|Name=mRNA_P-wetherbeei_contig11518.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig11518:80..412+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig11518:80..412+ >mRNA_P-wetherbeei_contig11518.2.1 ID=mRNA_P-wetherbeei_contig11518.2.1|Name=mRNA_P-wetherbeei_contig11518.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig11518:80..412+ (Phaeothamnion wetherbeei SAG_119_79)back to top |