mRNA_P-wetherbeei_contig1151.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1151.2.1
Unique NamemRNA_P-wetherbeei_contig1151.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1151.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1151contigP-wetherbeei_contig1151:3030..5131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1520
Hectar predicted targeting categoryother localisation
Exons5
Cds size1290
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1151.2.1prot_P-wetherbeei_contig1151.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1151 3126..4997 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185914.7321346-UTR-P-wetherbeei_contig1151:3029..31251683185914.7321346-UTR-P-wetherbeei_contig1151:3029..3125Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1151 3030..3125 -
1683185914.7818954-UTR-P-wetherbeei_contig1151:4997..51311683185914.7818954-UTR-P-wetherbeei_contig1151:4997..5131Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1151 4998..5131 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185914.7397132-CDS-P-wetherbeei_contig1151:3125..37491683185914.7397132-CDS-P-wetherbeei_contig1151:3125..3749Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1151 3126..3749 -
1683185914.7498238-CDS-P-wetherbeei_contig1151:3873..40311683185914.7498238-CDS-P-wetherbeei_contig1151:3873..4031Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1151 3874..4031 -
1683185914.7571714-CDS-P-wetherbeei_contig1151:4149..43691683185914.7571714-CDS-P-wetherbeei_contig1151:4149..4369Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1151 4150..4369 -
1683185914.7650602-CDS-P-wetherbeei_contig1151:4548..46161683185914.7650602-CDS-P-wetherbeei_contig1151:4548..4616Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1151 4549..4616 -
1683185914.773405-CDS-P-wetherbeei_contig1151:4777..49971683185914.773405-CDS-P-wetherbeei_contig1151:4777..4997Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1151 4778..4997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1151.2.1

>prot_P-wetherbeei_contig1151.2.1 ID=prot_P-wetherbeei_contig1151.2.1|Name=mRNA_P-wetherbeei_contig1151.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=430bp
MLLHAVTTTTSRVERASRLCNQVVIHAMWGYKPREQGLGEHTDALLEDCI
WCLDVEEIMTSDHVDVIEVENIAGIAIVWPASEAEARHGDMAGQDGVYVC
AAHVEAYAADGHAAVVRPLAAGSFHVCVEDVRGFHADLHQYGHASATCEE
LHLRHGLQAVLQRTITASQGPSRRRTVIPLFSRASWVKALRITASSPQKT
RTGQRLREAHTLSQKAINFAKERTRVEIVSFENEEDLRRLAKLVGRTAHV
RFSDARGRRGALSVSDSHILNVATAVVLAYEMTSATSRLVVKVEIVHNVA
LRDATWAGITFAGEPYAWFKERDIWTYYGSDVGAGGSAEGDAVAAREENG
PLRVKVLWVGRDRVVRDRYTVWFYVTVWGDAVTDGLRAEWTAKIEAFMTR
SSFPNPADTVERLFEEPARVFEGNIRRFN*
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mRNA from alignment at P-wetherbeei_contig1151:3030..5131-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1151.2.1 ID=mRNA_P-wetherbeei_contig1151.2.1|Name=mRNA_P-wetherbeei_contig1151.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2102bp|location=Sequence derived from alignment at P-wetherbeei_contig1151:3030..5131- (Phaeothamnion wetherbeei SAG_119_79)
GGTGACAGTGCGGCCTGACGGGCGCTGCAAGGGAGGAGGGTGGTGGGTGG
CGCGCCTGCTTGATTTTCGCCGAGTCGGAACGCGGGTGAGGGCTGTGGCC
GAGTTTTTGAAAATCCACGCATTGAGCTCCTTGAATGTTATTGCATGCGG
TCACGACGACGACGTCAAGAGTTGAAAGAGCGTCTCGTCTCTGTAATCAG
GTGGTGATCCATGCAATGTGGGGCTACAAGCCTCGCGAGCAAGGTCTGGG
AGAGCACACCGACGCCCTGCTGGAAGATTGCATCTGGTGCCTGGACGTCG
AAGAGATAATGACATCGGACCACGTCGATGTCATAGAGGTCGAGAATATC
GCAGGTGAGTTCGAAGTGTCTTCTTGCGGTTTGTGTGGCTGCGATCTTGG
AGGCTCTGGCAATTTCTCCTTGTGCAAAAGGCAGTGCGCCTCCGATTTCC
TTTCTCACAAGTGCTGTGCGGCGTGGCGGCGCGCATCGTATCTGCGAAAA
AACGCGCATTCTCAGGCATCGCAATCGTATGGCCAGCCAGCGAGGCGGAA
GCACGGCATGGAGACATGGCCGGGCAGGACGGGGTGAGTGTGGTCTTTGG
TTTTGGCGAGCGAAGGGTGCCTGCAAAGATCCACGCACGCGTTCCTTCTC
ATCTGCTGTCTGACGCTCGCACGGCGCGGTCAGTGCGGTTAGGGTTTTAC
GGACTCACATTTGTGCTTAATCCCGCCGCAACCCTCACGGACCGTCCACG
TGCTTCTGCTAGGTTTACGTGTGCGCCGCGCACGTTGAAGCCTACGCAGC
AGATGGTCATGCAGCGGTGGTCCGGCCGCTCGCGGCGGGCTCCTTCCACG
TCTGCGTGGAAGACGTACGTGGCTTTCACGCAGACTTGCACCAATACGGC
CATGCGAGCGCAACGTGTGAAGAGCTACACCTTCGGCACGGCCTGCAGGC
GGTGCTCCAACGGACTATTACGGCCTCGCAAGGTGATGCGTGGTTGTTTT
TAATCATCGAAGGGGCAGCCGGTGGTTACTTTTATGTCCAACATTGCTCC
AACCTGACCTATTATGGTGCCCACCGCCGCATTTTTTTCTTGCCTGCCAG
GGCCGTCAAGGCGGCGTACCGTCATCCCCCTCTTTTCGCGGGCATCGTGG
GTGAAGGCGCTGCGCATTACCGCATCATCGCCGCAAAAGACGAGGACGGG
GCAGCGCCTTCGCGAGGCGCACACCCTGAGCCAGAAAGCCATCAACTTTG
CGAAAGAGGTGCGCGGGTTTTGGTTTTTTGTCAGGTGTGGCGGGAAGGCT
CGGTGGGGGTTATGGTGAGCCTTTTTGGGGGGGCTGTGGGTCAGCTGATG
CCCGTCGCTTCCTTCATCTCTTCTGTTTTCAGAGAACGCGGGTTGAGATC
GTGTCGTTCGAGAACGAGGAGGACCTGCGCCGACTGGCGAAACTTGTCGG
CCGAACAGCACACGTGCGGTTCAGTGACGCCCGCGGGAGACGTGGCGCCT
TGTCGGTATCTGACAGTCACATTCTCAACGTGGCCACCGCGGTGGTCCTG
GCGTACGAGATGACGAGTGCGACAAGCCGCCTCGTCGTCAAGGTAGAAAT
CGTGCACAACGTCGCGTTGCGCGATGCAACGTGGGCCGGAATCACGTTCG
CCGGAGAGCCGTACGCGTGGTTTAAGGAGCGGGACATCTGGACATATTAC
GGCAGCGACGTGGGCGCTGGCGGCAGCGCGGAGGGCGATGCTGTGGCGGC
GCGGGAGGAGAACGGCCCGCTGCGGGTGAAAGTCTTGTGGGTGGGTCGGG
ATCGGGTAGTGCGAGACCGCTATACGGTTTGGTTTTACGTCACTGTGTGG
GGGGATGCGGTGACAGATGGACTACGTGCCGAATGGACAGCAAAGATCGA
AGCCTTCATGACGCGCAGCAGTTTTCCGAACCCCGCGGACACGGTGGAAA
GGCTCTTCGAGGAGCCGGCGCGTGTTTTTGAGGGCAACATCAGGCGCTTC
AATTAACGATGAATTGAAAAAGAGAGGGAGACAGCAATCTTGTGTTTCAT
CACTAGTGGCGTTTAGGCTTGGACACGTGGCGAATAAAGTTGTCCTTCAC
AG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1151:3030..5131-

>mRNA_P-wetherbeei_contig1151.2.1 ID=mRNA_P-wetherbeei_contig1151.2.1|Name=mRNA_P-wetherbeei_contig1151.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1290bp|location=Sequence derived from alignment at P-wetherbeei_contig1151:3030..5131- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTATTGCATGCGGTCACGACGACGACGTCAAGAGTTGAAAGAGCGTC
TCGTCTCTGTAATCAGGTGGTGATCCATGCAATGTGGGGCTACAAGCCTC
GCGAGCAAGGTCTGGGAGAGCACACCGACGCCCTGCTGGAAGATTGCATC
TGGTGCCTGGACGTCGAAGAGATAATGACATCGGACCACGTCGATGTCAT
AGAGGTCGAGAATATCGCAGGCATCGCAATCGTATGGCCAGCCAGCGAGG
CGGAAGCACGGCATGGAGACATGGCCGGGCAGGACGGGGTTTACGTGTGC
GCCGCGCACGTTGAAGCCTACGCAGCAGATGGTCATGCAGCGGTGGTCCG
GCCGCTCGCGGCGGGCTCCTTCCACGTCTGCGTGGAAGACGTACGTGGCT
TTCACGCAGACTTGCACCAATACGGCCATGCGAGCGCAACGTGTGAAGAG
CTACACCTTCGGCACGGCCTGCAGGCGGTGCTCCAACGGACTATTACGGC
CTCGCAAGGGCCGTCAAGGCGGCGTACCGTCATCCCCCTCTTTTCGCGGG
CATCGTGGGTGAAGGCGCTGCGCATTACCGCATCATCGCCGCAAAAGACG
AGGACGGGGCAGCGCCTTCGCGAGGCGCACACCCTGAGCCAGAAAGCCAT
CAACTTTGCGAAAGAGAGAACGCGGGTTGAGATCGTGTCGTTCGAGAACG
AGGAGGACCTGCGCCGACTGGCGAAACTTGTCGGCCGAACAGCACACGTG
CGGTTCAGTGACGCCCGCGGGAGACGTGGCGCCTTGTCGGTATCTGACAG
TCACATTCTCAACGTGGCCACCGCGGTGGTCCTGGCGTACGAGATGACGA
GTGCGACAAGCCGCCTCGTCGTCAAGGTAGAAATCGTGCACAACGTCGCG
TTGCGCGATGCAACGTGGGCCGGAATCACGTTCGCCGGAGAGCCGTACGC
GTGGTTTAAGGAGCGGGACATCTGGACATATTACGGCAGCGACGTGGGCG
CTGGCGGCAGCGCGGAGGGCGATGCTGTGGCGGCGCGGGAGGAGAACGGC
CCGCTGCGGGTGAAAGTCTTGTGGGTGGGTCGGGATCGGGTAGTGCGAGA
CCGCTATACGGTTTGGTTTTACGTCACTGTGTGGGGGGATGCGGTGACAG
ATGGACTACGTGCCGAATGGACAGCAAAGATCGAAGCCTTCATGACGCGC
AGCAGTTTTCCGAACCCCGCGGACACGGTGGAAAGGCTCTTCGAGGAGCC
GGCGCGTGTTTTTGAGGGCAACATCAGGCGCTTCAATTAA
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