mRNA_P-wetherbeei_contig1150.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1150.6.1
Unique NamemRNA_P-wetherbeei_contig1150.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1150.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1150contigP-wetherbeei_contig1150:6618..7713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size814
Hectar predicted targeting categoryother localisation
Exons2
Cds size813
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185914.3746645-CDS-P-wetherbeei_contig1150:6617..70161683185914.3746645-CDS-P-wetherbeei_contig1150:6617..7016Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1150 6618..7016 +
1683185914.3823087-CDS-P-wetherbeei_contig1150:7298..77121683185914.3823087-CDS-P-wetherbeei_contig1150:7298..7712Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1150 7299..7712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1150.6.1prot_P-wetherbeei_contig1150.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1150 6618..7712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1150.6.1

>prot_P-wetherbeei_contig1150.6.1 ID=prot_P-wetherbeei_contig1150.6.1|Name=mRNA_P-wetherbeei_contig1150.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=271bp
DAWCLATVTARLDGGCYAVRYADGTVAAKLHFAFLRKLPSAGVDDGAGGA
KDASGGDAAKTTSGGNGGSGGTETAEKKEEARPPSATGSASRKRPAGPIT
RDVSTRLLERKQYTVLDMVLVRLPGERVWKAGQVFESEEDGTYSVRFADG
SEAAAIKGAHLRELEVDLAADDDDEVSENTASSSGNESNGNGRNGGGGVG
TGAGAGGAVTAGRKGSAGDGGGAAAAEGDKAAADGGEVDNGDEGAERKKK
RVRQKRLVKGDMVLARKKNSV
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mRNA from alignment at P-wetherbeei_contig1150:6618..7713+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1150.6.1 ID=mRNA_P-wetherbeei_contig1150.6.1|Name=mRNA_P-wetherbeei_contig1150.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1096bp|location=Sequence derived from alignment at P-wetherbeei_contig1150:6618..7713+ (Phaeothamnion wetherbeei SAG_119_79)
GACGCGTGGTGCCTCGCCACAGTGACGGCGCGCCTCGACGGCGGCTGCTA
CGCCGTTCGCTACGCCGACGGAACCGTCGCCGCTAAGCTACACTTCGCAT
TCTTGCGCAAGCTGCCGAGCGCCGGCGTTGACGATGGAGCCGGTGGTGCT
AAGGACGCCAGTGGCGGCGATGCCGCAAAGACTACCAGCGGCGGCAACGG
AGGCAGCGGAGGCACCGAAACGGCGGAAAAGAAGGAGGAGGCGCGTCCGC
CGTCGGCCACGGGGTCGGCGTCGAGGAAGCGTCCCGCCGGGCCGATCACA
CGGGACGTGTCAACGCGCCTGCTGGAGCGCAAGCAGTACACGGTCCTCGA
CATGGTGCTGGTGCGGCTTCCCGGGGAGCGCGTCTGGAAGGCCGGACAGG
TGAGCTGACAAAGTTTATCGCTGCTCTAGGTTCCTCTTCAGTAAAACAAT
TTCTGCCGTCGCTGCTTAGCCTTGCCTTTGTTGCCTTTGCAGCTGCCGCT
ACGGCATCCGCCGGCTGCTGTTGCTGCCCGCCGCCGCTGCCACCGCCCCC
GACGGCTCCGTCCGCGACACCCGCTACCTTGCGCCGTTTTCCCGCTGTCC
CCGCCGCCTGATGCGTCTCCTTGGGGCTCGGCGCTCACATCCGCCGCTAG
TGCCACCGCCCGCCGCTCGTTGCAATCGCAGGTGTTCGAATCAGAGGAGG
ACGGCACGTATTCCGTGCGCTTCGCCGACGGCAGCGAGGCGGCGGCCATC
AAGGGCGCACATCTCCGTGAGCTTGAGGTCGACCTCGCCGCTGACGACGA
CGATGAAGTCTCTGAGAACACCGCTTCCTCCAGTGGCAATGAGAGCAACG
GCAACGGCAGGAATGGCGGCGGCGGTGTCGGCACCGGTGCGGGTGCCGGT
GGTGCGGTTACTGCTGGCAGAAAGGGTAGCGCCGGCGACGGTGGCGGCGC
CGCGGCTGCGGAGGGCGATAAGGCAGCAGCAGATGGAGGAGAGGTTGACA
ACGGCGACGAGGGCGCCGAACGCAAAAAGAAGCGGGTGCGGCAGAAGCGA
CTAGTGAAGGGTGACATGGTGCTCGCGCGCAAGAAGAATTCGGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1150:6618..7713+

>mRNA_P-wetherbeei_contig1150.6.1 ID=mRNA_P-wetherbeei_contig1150.6.1|Name=mRNA_P-wetherbeei_contig1150.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=813bp|location=Sequence derived from alignment at P-wetherbeei_contig1150:6618..7713+ (Phaeothamnion wetherbeei SAG_119_79)
GACGCGTGGTGCCTCGCCACAGTGACGGCGCGCCTCGACGGCGGCTGCTA
CGCCGTTCGCTACGCCGACGGAACCGTCGCCGCTAAGCTACACTTCGCAT
TCTTGCGCAAGCTGCCGAGCGCCGGCGTTGACGATGGAGCCGGTGGTGCT
AAGGACGCCAGTGGCGGCGATGCCGCAAAGACTACCAGCGGCGGCAACGG
AGGCAGCGGAGGCACCGAAACGGCGGAAAAGAAGGAGGAGGCGCGTCCGC
CGTCGGCCACGGGGTCGGCGTCGAGGAAGCGTCCCGCCGGGCCGATCACA
CGGGACGTGTCAACGCGCCTGCTGGAGCGCAAGCAGTACACGGTCCTCGA
CATGGTGCTGGTGCGGCTTCCCGGGGAGCGCGTCTGGAAGGCCGGACAGG
TGTTCGAATCAGAGGAGGACGGCACGTATTCCGTGCGCTTCGCCGACGGC
AGCGAGGCGGCGGCCATCAAGGGCGCACATCTCCGTGAGCTTGAGGTCGA
CCTCGCCGCTGACGACGACGATGAAGTCTCTGAGAACACCGCTTCCTCCA
GTGGCAATGAGAGCAACGGCAACGGCAGGAATGGCGGCGGCGGTGTCGGC
ACCGGTGCGGGTGCCGGTGGTGCGGTTACTGCTGGCAGAAAGGGTAGCGC
CGGCGACGGTGGCGGCGCCGCGGCTGCGGAGGGCGATAAGGCAGCAGCAG
ATGGAGGAGAGGTTGACAACGGCGACGAGGGCGCCGAACGCAAAAAGAAG
CGGGTGCGGCAGAAGCGACTAGTGAAGGGTGACATGGTGCTCGCGCGCAA
GAAGAATTCGGTG
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