mRNA_P-wetherbeei_contig1150.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1150.3.1
Unique NamemRNA_P-wetherbeei_contig1150.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1150.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1150contigP-wetherbeei_contig1150:2991..4361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1093
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_003640.1
Cds size687
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185914.3205557-UTR-P-wetherbeei_contig1150:2990..30841683185914.3205557-UTR-P-wetherbeei_contig1150:2990..3084Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1150 2991..3084 -
1683185914.3521652-UTR-P-wetherbeei_contig1150:4049..43611683185914.3521652-UTR-P-wetherbeei_contig1150:4049..4361Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1150 4050..4361 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185914.3306606-CDS-P-wetherbeei_contig1150:3084..36311683185914.3306606-CDS-P-wetherbeei_contig1150:3084..3631Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1150 3085..3631 -
1683185914.3447943-CDS-P-wetherbeei_contig1150:3909..40491683185914.3447943-CDS-P-wetherbeei_contig1150:3909..4049Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1150 3910..4049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1150.3.1prot_P-wetherbeei_contig1150.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1150 3085..4049 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1150.3.1

>prot_P-wetherbeei_contig1150.3.1 ID=prot_P-wetherbeei_contig1150.3.1|Name=mRNA_P-wetherbeei_contig1150.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=229bp
MSKIADCNAGVVDDAARRFARLAGELHGTLAPKAAFIVDYRPFPRSSYGA
LKEAELLEEKAALLRSELSRVEAAATSQAAATSQAAATATVTTEAIVPAA
AATAVAAGAATAGRSSGAASDSASDHIPLLAQQPAATAAGTGGGEAARRT
RAAAAAGLPPARQVAPDAASWAGAGDAGGGGNASIPVRHEEQQQPQQQWQ
QQSGPFPAARAPERGEAAYFHPNRPNMR*
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mRNA from alignment at P-wetherbeei_contig1150:2991..4361-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1150.3.1 ID=mRNA_P-wetherbeei_contig1150.3.1|Name=mRNA_P-wetherbeei_contig1150.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1371bp|location=Sequence derived from alignment at P-wetherbeei_contig1150:2991..4361- (Phaeothamnion wetherbeei SAG_119_79)
TTAGCCAATGCTGACGAAAGAGGACGTAAAGCTACCACGTCGTCCGGACA
ATGCCACCCTCTTGGCGGAGCTGGACGAAGCCGAGTTGGTGAGATTTTGC
CTTCGTCCTTCTCTAACTTGGTATCCGTTGTCCAAATCTTCTCACTTTCT
GTCACCCATGCCACTTCTCCTGCATTTCACGGCACCTCATACGATGCCAG
CCATAATTTCTTCAAGCTAAATGGCAAATCTGTCACCTGTACGATCCCTC
TCCGACGTGGCCTCCAGAAAGTCGCTCAACTCCTCGACCTGGCGGAAACG
GCAGCATCGGAGATGTCGAAAATCGCCGATTGCAATGCCGGGGTGGTTGA
CGACGCTGCGCGTCGCTTTGCGCGGTTGGCCGGCGAACTGCACGGAACCT
TGGCGCCCAAGGCCGCCTTCATCGTCGACTACCGGCCTTTCCCACGAAGC
AGGTGAGGGGACAGGTGAGCTTGTTGCGAAAAGAAGATAATATCAAGATC
GGTTCAAGAGCTCGTTACAAAAGGATGAAGAGCGGTTCTTACCCTTTGCT
CTCCAGTGACAGCTGTGTCGCCTGCATCGCGGCTGGCTTTTGATGACTCA
CCCACTCTTTAGCGCACATTATCCCTTCTCGGATTGCCAAGTAAGTGGTC
TTAAAACCTTTCTGATTTGCTTTGCTCGACGACGGATGTATTGAATGTCT
TATGCTCCCCATTTTCGATGACTGTTGCAGTTACGGCGCCTTAAAGGAGG
CGGAGCTGCTCGAAGAAAAGGCCGCCCTTCTGCGGTCCGAGCTCTCCCGG
GTGGAGGCCGCCGCCACTTCGCAAGCCGCCGCCACTTCGCAAGCCGCCGC
CACCGCGACTGTCACCACGGAAGCAATCGTTCCCGCTGCCGCGGCAACCG
CCGTCGCTGCCGGCGCCGCGACGGCAGGAAGGAGTTCCGGAGCTGCAAGC
GATTCAGCCAGCGATCACATCCCGCTGCTGGCCCAGCAGCCGGCTGCTAC
TGCCGCGGGCACGGGCGGGGGAGAAGCCGCGCGGAGAACGCGAGCGGCGG
CGGCGGCGGGGCTGCCACCGGCACGGCAGGTAGCGCCCGACGCAGCGTCG
TGGGCGGGCGCAGGCGACGCTGGTGGCGGTGGCAACGCAAGCATTCCGGT
GAGACATGAGGAACAGCAGCAGCCGCAGCAGCAGTGGCAGCAGCAGAGCG
GACCCTTCCCGGCCGCACGAGCACCGGAAAGAGGCGAAGCTGCCTATTTC
CATCCAAACCGTCCTAACATGAGATGATAATCGGGACGGGTAAGGGCAGC
CACCCACAGGCGGAGATAGGCTGACATGACATCCATCTTCGCTGCGAAGC
ATAAAGGCAAGAAGGACTCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1150:2991..4361-

>mRNA_P-wetherbeei_contig1150.3.1 ID=mRNA_P-wetherbeei_contig1150.3.1|Name=mRNA_P-wetherbeei_contig1150.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=687bp|location=Sequence derived from alignment at P-wetherbeei_contig1150:2991..4361- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGAAAATCGCCGATTGCAATGCCGGGGTGGTTGACGACGCTGCGCG
TCGCTTTGCGCGGTTGGCCGGCGAACTGCACGGAACCTTGGCGCCCAAGG
CCGCCTTCATCGTCGACTACCGGCCTTTCCCACGAAGCAGTTACGGCGCC
TTAAAGGAGGCGGAGCTGCTCGAAGAAAAGGCCGCCCTTCTGCGGTCCGA
GCTCTCCCGGGTGGAGGCCGCCGCCACTTCGCAAGCCGCCGCCACTTCGC
AAGCCGCCGCCACCGCGACTGTCACCACGGAAGCAATCGTTCCCGCTGCC
GCGGCAACCGCCGTCGCTGCCGGCGCCGCGACGGCAGGAAGGAGTTCCGG
AGCTGCAAGCGATTCAGCCAGCGATCACATCCCGCTGCTGGCCCAGCAGC
CGGCTGCTACTGCCGCGGGCACGGGCGGGGGAGAAGCCGCGCGGAGAACG
CGAGCGGCGGCGGCGGCGGGGCTGCCACCGGCACGGCAGGTAGCGCCCGA
CGCAGCGTCGTGGGCGGGCGCAGGCGACGCTGGTGGCGGTGGCAACGCAA
GCATTCCGGTGAGACATGAGGAACAGCAGCAGCCGCAGCAGCAGTGGCAG
CAGCAGAGCGGACCCTTCCCGGCCGCACGAGCACCGGAAAGAGGCGAAGC
TGCCTATTTCCATCCAAACCGTCCTAACATGAGATGA
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