mRNA_P-wetherbeei_contig11484.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11484.1.1
Unique NamemRNA_P-wetherbeei_contig11484.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11484.1.1 vs. uniprot
Match: A0A484E4I8_BRELC (RWP-RK domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E4I8_BRELC)

HSP 1 Score: 58.2 bits (139), Expect = 6.300e-6
Identity = 24/48 (50.00%), Postives = 36/48 (75.00%), Query Frame = 1 
Query: 1048 SIGTLQEKYHLPLRVAAGQLGVSVARLLKVCRQYCILRWPFRQVRSLR 1191
            ++  LQ  YHLPL+ AAG+LG+  A L ++CR+ CI +WP+RQ+ S+R
Sbjct:   78 NVEQLQTVYHLPLKTAAGRLGICEAALKRICRRNCISKWPYRQLSSVR 125
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11484.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A484E4I8_BRELC6.300e-650.00RWP-RK domain-containing protein n=1 Tax=Bremia la... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11484contigP-wetherbeei_contig11484:2..2147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3055.EDP04200
PFAMsRWP-RK
Model size1305
Max annot lvl33090|Viridiplantae
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.82e-08
EggNOG OGs2CV6J@1|root,2RREA@2759|Eukaryota,381SP@33090|Viridiplantae
DescriptionTranscription factor
Cds size303
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185913.4127035-UTR-P-wetherbeei_contig11484:1..10031683185913.4127035-UTR-P-wetherbeei_contig11484:1..1003Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11484 2..1003 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185913.4220142-CDS-P-wetherbeei_contig11484:1003..10941683185913.4220142-CDS-P-wetherbeei_contig11484:1003..1094Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11484 1004..1094 +
1683185913.430413-CDS-P-wetherbeei_contig11484:1935..21471683185913.430413-CDS-P-wetherbeei_contig11484:1935..2147Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11484 1936..2147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11484.1.1prot_P-wetherbeei_contig11484.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11484 1004..2147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11484.1.1

>prot_P-wetherbeei_contig11484.1.1 ID=prot_P-wetherbeei_contig11484.1.1|Name=mRNA_P-wetherbeei_contig11484.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
MKGERRAYCNGARDLSIGTLQEKYHLPLRVAAGQLGVSVARLLKVCRQYC
ILRWPFRQVRSLRDTNNELRRDIAEAAAAGQGASVQQLLQRRLKRTARKE
E
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mRNA from alignment at P-wetherbeei_contig11484:2..2147+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11484.1.1 ID=mRNA_P-wetherbeei_contig11484.1.1|Name=mRNA_P-wetherbeei_contig11484.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2146bp|location=Sequence derived from alignment at P-wetherbeei_contig11484:2..2147+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGGCCGAGCGGTGGGCGGCGCGCGTTGGGGAGGCACGTATACTTACCA
TTCAAAAATGAAGGACAACGCCCAAGTGACCCTAGCCATTTTTGAAACCG
CAGTGCGAGCGAGTCTGCAGATTTCGCAGATTTCGCCATTCTTTTCCAGT
TTTCAGTTTTTGTTCCTCGAGACAAACAATTGACATCTCTCCCAGGCGTC
CAAGCCACGACGTTTCCCCTTCATGGTCTTGGGCACCCCTGCACCTTTCT
CTTTCTTTCTTCGGAGCGCTCGTAGATCAGTTTTCACCCCCCAAAGTGGG
CCCGAAACCTCCCCGCGATGCAGTCGTTGCGCCGCGTTTCAGGATGGCAG
GAATTTGAATGCCCATGTAAGTGTTCATCTTGCTTTCCCTGCTTTGCAAA
CCTGGTAGTTTAACAGTTCCTTTTATTTTATTTTCTCCTCGTTCGTTCGT
TGTGATCGCCTCGTGGTGATGCGCCAACTGCTTCTTGCGCGGCGGCGTCC
GTCTTCCCTCTTTCGTGCATTGACCATCAGCTGTTTTGTGCCTGGCGTCA
GGTTCTGTTGTATGAAACGCTGATTTGTTTCTTAAATGCATCCTCTCTGA
CCGATCTGCCTAGCTGGGTAGTCTGTGCTGTCCGTCCGTGCTTTTCTCTT
TCTTCTGCTGATGGCCTTGAGCTGATGCGCGCGAGGCGATTGACTCTTCC
AGTCCGAAGTGCCATTCCGAATTGTTTCTTGCGTCCTCTAGCAAACACAG
AAAACTGATCGTTGTTTGTCAGCCATTAATGATTGATGCATGATGCTGGC
CCGTGCACGAGTGTGCTGATCTTTCCCCACTTCCCCGTGTGCCTGGCGCA
GGCAAGAGATAAGCGCACCTCCTAAATAACCCCTCGAGATAAGGAAGGGG
GCGGCTTGTTTGGAGCGGTGGGTATTTATCTCTGAACTCCTAGCTACTGC
TGGTCGTGCGTGGCTCGCTGCTGCTGCCGCAGCGGCCGGCCAGCAGCGCG
GGATGAAGGGAGAGCGGAGGGCTTACTGCAACGGGGCCCGAGACCTGAGC
ATTGGCACGCTGCAGGAAAAGTATCACCTGCCATTGCGAGTAGGTGAGTG
ACGAGCGGCCGGATCGCCAATGTCGCTATGAATGATTTGCCGGTGCCGGC
CGGCCGGCCACGGAGCTGCCCTGTCGATTCCACACGCTTCGTCCTTTTTT
CTTTCTTCTTTTAGTGCGTCAGGCAGGTGGTGGCGGTGCGCGTAGTTGCT
CATAGAAGGAAAGGGGCCTGCGATTCGGGCCAGTTAGTTGCTTACTTATT
CGGCCGAGGGCATATATGGCGGTGCAGCCGCGGTTTCCTTGCACACGCAA
CCGCATGCGGGCGCCGGGAGGCCACTGTGCTCATCAAAGGATGTCAGGGC
GGGGCGGATTTCCGTTTGTTTGCATGCCCACACTCGGTGGGAAGCGAGGC
AATGGCGACCGGTTATTGGCCAGCGAGGCTTGGTCGGGTACCCGGTGATG
CCATCCGCCAGGGAGACGCTTATTTTCGGTGGCGTAGTTTGTGTCATTTG
ATGTTTCAACCCCACATTGGAGCACTGCGCATGCTCTGTCGGTTGAGGAT
ACCAGTAGGCAGCGCTTGCATGCATGGGTGATCCAGTTAGGTCTGCCGAC
GATGGCTTGCAAGGCGGGCGGCGGCAGCGATGGCAGCTGCAGCCGTTCGC
AACAAATTTCCGAGGCAGCGCGAACGGGTGACTTGCTTCCCCCTTAGTTT
CCAGGGTCGTGGAAAGAGAAGAGGATAACGGCACAAATTTCCCATGCTTG
CAACCCCGTTGCTTCTAGTGCCGCCGCTTTCTGACGCTCGCTCCCCTTTT
TTCCCTTTCTCTTCGCTATTTTGGTCATGGCCTTCCTGTATTGTCTCGCC
CGCTCCGTCCTGTCCCGCCTTTCGCCTCTGCCAGCCGCCGGCCAGCTGGG
AGTGTCGGTGGCGCGGTTGCTCAAGGTATGCCGGCAGTACTGCATTCTCC
GCTGGCCATTCCGTCAGGTGCGCAGCCTGCGCGACACCAACAACGAGCTG
CGGCGGGACATCGCGGAGGCGGCGGCGGCCGGGCAGGGCGCCTCCGTGCA
GCAGCTGCTGCAGCGCCGTCTCAAGCGGACGGCGCGCAAAGAGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11484:2..2147+

>mRNA_P-wetherbeei_contig11484.1.1 ID=mRNA_P-wetherbeei_contig11484.1.1|Name=mRNA_P-wetherbeei_contig11484.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig11484:2..2147+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGGAGAGCGGAGGGCTTACTGCAACGGGGCCCGAGACCTGAGCAT
TGGCACGCTGCAGGAAAAGTATCACCTGCCATTGCGAGTAGCCGCCGGCC
AGCTGGGAGTGTCGGTGGCGCGGTTGCTCAAGGTATGCCGGCAGTACTGC
ATTCTCCGCTGGCCATTCCGTCAGGTGCGCAGCCTGCGCGACACCAACAA
CGAGCTGCGGCGGGACATCGCGGAGGCGGCGGCGGCCGGGCAGGGCGCCT
CCGTGCAGCAGCTGCTGCAGCGCCGTCTCAAGCGGACGGCGCGCAAAGAG
GAG
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