mRNA_P-wetherbeei_contig11482.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11482.2.1
Unique NamemRNA_P-wetherbeei_contig11482.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11482.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11482contigP-wetherbeei_contig11482:827..1204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1123261.AXDW01000001_gene1450
Model size378
Max annot lvl135614|Xanthomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.98e-06
EggNOG OGs2C85H@1|root,33H5Y@2|Bacteria,1NJ1W@1224|Proteobacteria,1SSCR@1236|Gammaproteobacteria,1XAZ9@135614|Xanthomonadales
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185913.3219063-CDS-P-wetherbeei_contig11482:826..12041683185913.3219063-CDS-P-wetherbeei_contig11482:826..1204Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11482 827..1204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11482.2.1prot_P-wetherbeei_contig11482.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11482 827..1204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11482.2.1

>prot_P-wetherbeei_contig11482.2.1 ID=prot_P-wetherbeei_contig11482.2.1|Name=mRNA_P-wetherbeei_contig11482.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
MFGKFYPKDYLVAAFSCPEDADQAVHALQGLGFASDDIVVCDGELILAHQ
AEILENRTFIDKFLGKFADHDSFGKKVERASHRDSDYRFVLIYAPTKEKT
QEATDAICTRAVFAQKYDAMSFNEIV
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mRNA from alignment at P-wetherbeei_contig11482:827..1204-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11482.2.1 ID=mRNA_P-wetherbeei_contig11482.2.1|Name=mRNA_P-wetherbeei_contig11482.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig11482:827..1204- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCGGCAAGTTCTACCCCAAGGATTACCTGGTCGCCGCCTTCAGCTG
TCCCGAGGACGCCGATCAGGCCGTGCACGCGCTGCAGGGGCTTGGGTTTG
CCTCCGACGACATCGTCGTCTGCGACGGCGAACTGATCCTCGCTCACCAG
GCCGAAATCCTCGAAAACCGCACCTTCATCGACAAATTCTTAGGCAAGTT
CGCCGACCACGACTCCTTCGGGAAAAAGGTCGAGCGTGCCAGCCACCGCG
ATTCCGATTACCGCTTCGTCCTGATCTACGCTCCCACCAAGGAGAAGACC
CAGGAAGCCACCGACGCCATCTGCACACGTGCCGTGTTCGCTCAGAAATA
CGACGCCATGAGCTTCAACGAGATCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11482:827..1204-

>mRNA_P-wetherbeei_contig11482.2.1 ID=mRNA_P-wetherbeei_contig11482.2.1|Name=mRNA_P-wetherbeei_contig11482.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig11482:827..1204- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCGGCAAGTTCTACCCCAAGGATTACCTGGTCGCCGCCTTCAGCTG
TCCCGAGGACGCCGATCAGGCCGTGCACGCGCTGCAGGGGCTTGGGTTTG
CCTCCGACGACATCGTCGTCTGCGACGGCGAACTGATCCTCGCTCACCAG
GCCGAAATCCTCGAAAACCGCACCTTCATCGACAAATTCTTAGGCAAGTT
CGCCGACCACGACTCCTTCGGGAAAAAGGTCGAGCGTGCCAGCCACCGCG
ATTCCGATTACCGCTTCGTCCTGATCTACGCTCCCACCAAGGAGAAGACC
CAGGAAGCCACCGACGCCATCTGCACACGTGCCGTGTTCGCTCAGAAATA
CGACGCCATGAGCTTCAACGAGATCGTC
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