mRNA_P-wetherbeei_contig11467.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11467.2.1
Unique NamemRNA_P-wetherbeei_contig11467.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11467.2.1 vs. uniprot
Match: A0A6H5K1S1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S1_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 9.610e-35
Identity = 74/181 (40.88%), Postives = 111/181 (61.33%), Query Frame = 1
Query:    1 RRVLIYNRDRSRQLINAEEVAAQLRLRLPALASXXXXXXXXXXXXXXXAGTVAAAVRWEVDVMLHSNARHPCELVQRLHEVDVLVTPHGFQSMMILFLQPGAVLFELYPYKYYKLGYKALAPATGVRYEFAMSEPQTLRHKLLLHYISTERCMSFYFCRSFARSDNVRMSDADVERVVALA 543
            RR+L+Y RD++RQ+++A++V   L+ RL                             W V++M+H + RHPC LV+ L  VDVL+TPHGFQSM+ LF++PG++LFE++P KY+K GY  +A    VR+ ++MS  + LR  +   Y STE CM +Y CR +ARS +V + +  +ER+V LA
Sbjct:  257 RRLLLYQRDQNRQILHADKVVEDLQERLGG--------------------------GWIVNMMMHDSDRHPCVLVETLAGVDVLLTPHGFQSMLGLFMRPGSLLFEVFPQKYFKAGYAPMAEGLDVRHAYSMS--RALRPMMGHSYPSTETCMKWYLCRWYARSSDVELDEESLERLVDLA 409          
BLAST of mRNA_P-wetherbeei_contig11467.2.1 vs. uniprot
Match: D7FGW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW3_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 8.760e-32
Identity = 69/180 (38.33%), Postives = 105/180 (58.33%), Query Frame = 1
Query:    1 RRVLIYNRDRSRQLINAEEVAAQLRLRLPALASXXXXXXXXXXXXXXXAGTVAAAVRWEVDVMLHSNARHPCELVQRLHEVDVLVTPHGFQSMMILFLQPGAVLFELYPYKYYKLGYKALAPATGVRYEFAMSEPQTLRHKLLLHYISTERCMSFYFCRSFARSDNVRMSDADVERVVAL 540
            R+++IY RDR R+L+  EE+  +L +RL  L                          W V  ++H + RHPCELVQ L   D+L+T HGFQSM+ LF+ PG++LFE+YP+KYYK GY  +A + G+RY ++ S P  L       + S E+CM +Y CR + RS +V +++  +E +++L
Sbjct:  301 RKLVIYQRDRDRKLLKTEELMDELWIRLGHLG-------------------------WAVKEIIHDDERHPCELVQELAGADILLTAHGFQSMLSLFMAPGSLLFEVYPHKYYKKGYAPMAQSMGLRYAYSESPP--LLPFAFWSWPSVEQCMKWYVCRRYMRSSDVVITEDSIEVLISL 453          
BLAST of mRNA_P-wetherbeei_contig11467.2.1 vs. uniprot
Match: A0A6H5JCF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCF3_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 3.400e-31
Identity = 69/180 (38.33%), Postives = 106/180 (58.89%), Query Frame = 1
Query:    1 RRVLIYNRDRSRQLINAEEVAAQLRLRLPALASXXXXXXXXXXXXXXXAGTVAAAVRWEVDVMLHSNARHPCELVQRLHEVDVLVTPHGFQSMMILFLQPGAVLFELYPYKYYKLGYKALAPATGVRYEFAMSEPQTLRHKLLLHYISTERCMSFYFCRSFARSDNVRMSDADVERVVAL 540
            R+++IY RDR+R+L+  EE+  +L +RL  L                          W V+ ++H + RHPCELVQ L   D+L+T HGFQSM+ LF+ PG++LFE+YP+KYYK GY  +A + G+RY ++ S P  L       + S E+CM +Y CR + RS +V ++   +E +++L
Sbjct:  462 RKLVIYQRDRNRKLLKTEELMDELWIRLGHLG-------------------------WAVEEIVHDDERHPCELVQELAGADILLTAHGFQSMLSLFMAPGSLLFEVYPHKYYKKGYAPMAQSMGLRYAYSESPP--LLPFAFWSWPSVEQCMKWYLCRRYMRSSDVVITADSIEVLISL 614          
BLAST of mRNA_P-wetherbeei_contig11467.2.1 vs. uniprot
Match: D7FHW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW9_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 6.350e-29
Identity = 57/130 (43.85%), Postives = 85/130 (65.38%), Query Frame = 1
Query:  172 WEVDVMLHSNARHPCELVQRLHEVDVLVTPHGFQSMMILFLQPGAVLFELYPYKYYKLGYKALAPATGVRYEFAMSEPQTLRHKLLLHYISTERCMSFYFCRSFARSDNVRMSDADVERVVALAGVSARR 561
            WEV  ++H NA  PC L  +L + D+L+TPHGFQSM++LFL PGA + E++PYKY+K GY  LA   GVR+E  MS P +   +L L ++  ERCM    CR ++RS +VR+ +  + ++   A  +++R
Sbjct:  546 WEVVQIVHDNAHEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKEGYAPLAKEWGVRHEHIMSRPVSWEKRLALFFVPLERCMKSIHCRKWSRSADVRLEEHHLRQIAKAAKQASKR 675          
BLAST of mRNA_P-wetherbeei_contig11467.2.1 vs. uniprot
Match: A0A6H5L8P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P6_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 6.950e-29
Identity = 57/130 (43.85%), Postives = 85/130 (65.38%), Query Frame = 1
Query:  172 WEVDVMLHSNARHPCELVQRLHEVDVLVTPHGFQSMMILFLQPGAVLFELYPYKYYKLGYKALAPATGVRYEFAMSEPQTLRHKLLLHYISTERCMSFYFCRSFARSDNVRMSDADVERVVALAGVSARR 561
            WEV  ++H NA  PC L  +L + D+L+TPHGFQSM++LFL PGA + E++PYKY+K GY  LA   GVR+E  MS P +   +L L ++  ERCM    CR ++RS +VR+ +  + ++   A  +++R
Sbjct:  619 WEVVQIVHDNAHEPCWLYSQLMDADMLLTPHGFQSMLLLFLPPGATILEVFPYKYWKEGYAPLAKEWGVRHEHIMSRPVSWEKRLALFFVPLERCMKSIHCRKWSRSADVRLEEHHLRQIAKAAKQASKR 748          
BLAST of mRNA_P-wetherbeei_contig11467.2.1 vs. uniprot
Match: A0A6H5JWT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT6_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.570e-28
Identity = 70/181 (38.67%), Postives = 107/181 (59.12%), Query Frame = 1
Query:    1 RRVLIYNRDRSRQLINAEEVAAQLRLRLPALASXXXXXXXXXXXXXXXAGTVAAAVRWEVDVMLHSNARHPCELVQRLHEVDVLVTPHGFQSMMILFLQPGAVLFELYPYKYYKLGYKALAPATGVRYEFAMSEPQTLRHKLLLHYISTERCMSFYFCRSFARSDNVRMSDADVERVVALA 543
            RR+L+Y RD+ R++ NA +V   LR RL                             W V+ M+H   R PCELV+ +  VDVL+TPHGFQSM+ LFL+PGA+LFE++P+KY+   Y A+    GVR+ ++MS  ++ R  +   + +TE CM +  CR+++R+ +V + + D+ER+V LA
Sbjct:  367 RRLLLYQRDQCRRIKNAAQVMEDLRERLGG--------------------------DWLVEEMIHDADRQPCELVKTVGGVDVLLTPHGFQSMLGLFLRPGALLFEVFPHKYFWGQYAAMVEGLGVRHAWSMS--RSGRFFMRFAHPTTETCMRYKRCRAYSRNTDVEIEEQDLERLVKLA 519          
BLAST of mRNA_P-wetherbeei_contig11467.2.1 vs. uniprot
Match: A0A7S3GPP9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GPP9_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.950e-28
Identity = 61/179 (34.08%), Postives = 96/179 (53.63%), Query Frame = 1
Query:    4 RVLIYNRDRSRQLINAEEVAAQLRLRLPALASXXXXXXXXXXXXXXXAGTVAAAVRWEVDVMLHSNARHPCELVQRLHEVDVLVTPHGFQSMMILFLQPGAVLFELYPYKYYKLGYKALAPATGVRYEFAMSEPQTLRHKLLLHYISTERCMSFYFCRSFARSDNVRMSDADVERVVAL 540
            ++++Y RD SR+L N EE  A LR +L                         +   W++++++H  +R PC L+  L+  D+L+TPHGFQSM++LFL    ++FE++P KYYK GY       GV +   MS       +L+L Y+S+  CM   FCR FAR+ +V ++   V  ++A 
Sbjct:   91 KMVLYQRDLSRKLANQEEAVAMLRSKL-------------------------SESDWDIEILMHKTSRSPCTLMHHLYNTDILLTPHGFQSMLLLFLPRPGLMFEIFPEKYYKRGYGPFGAEYGVTHGGTMSPSTGYYQQLVLPYVSSAYCMESKFCRGFARNQDVILTKHGVNNLLAF 244          
BLAST of mRNA_P-wetherbeei_contig11467.2.1 vs. uniprot
Match: A0A7S0GN44_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GN44_MICPS)

HSP 1 Score: 117 bits (293), Expect = 4.000e-28
Identity = 67/186 (36.02%), Postives = 96/186 (51.61%), Query Frame = 1
Query:    1 RRVLIYNRDRSRQLINAEEVAAQLRLRLPALASXXXXXXXXXXXXXXXAGTVAAAVRWEVDVMLHSNARHPCELVQRLHEVDVLVTPHGFQSMMILFLQPGAVLFELYPYKYYKLGYKALAPATGVRYEFAMSEPQTLRHKLLLHYISTERCMSFYFCRSFARSDNVRMSDADVERVVALAGVSAR 558
            R ++IY R+  R + +  +VA +L   L  L                          W V V+ HS++  PC L   L     LVTPHGFQSM+ LFL   A + E++P++YYK GYK  A   GV Y F+MS P++L  +L+    +T+ CM  Y+CR  AR  +V ++DAD   +   A V+AR
Sbjct:   34 RHLVIYQRNTGRVMEDVRDVATRLEDTLNTLDDDAGLDVGASNDGSHDGSIRPVRFVWRVSVVTHSDSFPPCALRSCLARASALVTPHGFQSMLYLFLPQNAHVHEVFPHRYYKHGYKRAALEWGVSYGFSMSPPRSLLSRLISRLFTTDACMRMYYCRFLARKGDVLVTDADAALIARSAVVAAR 219          
BLAST of mRNA_P-wetherbeei_contig11467.2.1 vs. uniprot
Match: A0A7S0KFF8_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KFF8_MICPS)

HSP 1 Score: 111 bits (278), Expect = 3.570e-27
Identity = 70/190 (36.84%), Postives = 96/190 (50.53%), Query Frame = 1
Query:    1 RRVLIYNRDRSRQLINAEEVAAQLRLRLPALASXXXXXXXXXXXXXXXAGTVAAAVRWEVDVMLHSNARHPCELVQRLHEVDVLVTPHGFQSMMILFLQPGAVLFELYPYKYYKLGYKALAPATGVRYEFAMSEPQTLRHKLLLHYISTERCMSFYFCRSFARSDNVRMSDADVERVVALAGVSARRASG 570
            R V++Y RD  R+L  AEE A  L   LP                    GT A    W   V+ H     PC L + L   DVLVTPHGFQSM+ + L+PGA+++E++P++YYK GYK  A   G+ +  ++S P+     L+    +T  CMS Y+CR  AR  +V +   DVE +      S R A G
Sbjct:    9 RHVVVYQRDAGRRLEGAEEAANALVEALPG-------------------GTGA----WRHSVVTHRENLPPCLLKRCLGNADVLVTPHGFQSMLYVLLKPGAMMYEVFPHRYYKHGYKRAALEWGLAHGASLSPPRGALPTLISRAFTTRGCMSMYYCRYLARKGDVVLEARDVEAIARAVRASDRDARG 175          
BLAST of mRNA_P-wetherbeei_contig11467.2.1 vs. uniprot
Match: C1DZC0_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZC0_MICCC)

HSP 1 Score: 115 bits (289), Expect = 2.630e-26
Identity = 71/190 (37.37%), Postives = 97/190 (51.05%), Query Frame = 1
Query:    1 RRVLIYNRDRSRQLINAEEVAAQLRLRLPALASXXXXXXXXXXXXXXXAGTVAAAVRWEVDVMLHSNARHPCELVQRLHEVDVLVTPHGFQSMMILFLQPGAVLFELYPYKYYKLGYKALAPATGVRYEFAMSEPQTLRHKLLLHYISTERCMSFYFCRSFARSDNVRMSDADVERVVALAGVSARRASG 570
            R V++Y RD  R+L  AEE A  L   LP                    GT A    W   V+ H     PC L + L   DVLVTPHGFQSM+ + L+PGA+++E++P++YYK GYK  A   G+ +  ++S P+     L+    +T  CMS Y+CR FAR  +V +   DVE +      S R A G
Sbjct:  335 RHVVVYQRDAGRRLEGAEEAANALVRALPG-------------------GTGA----WRHSVVTHHENLPPCLLKRCLGNADVLVTPHGFQSMLYILLKPGAMMYEVFPHRYYKHGYKRAALEWGLAHGMSLSPPRGALPTLISRAFTTGGCMSMYYCRYFARKGDVALEARDVEAIARAVRASDRDAQG 501          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11467.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5K1S1_9PHAE9.610e-3540.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGW3_ECTSI8.760e-3238.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCF3_9PHAE3.400e-3138.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHW9_ECTSI6.350e-2943.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8P6_9PHAE6.950e-2943.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWT6_9PHAE1.570e-2838.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3GPP9_9STRA1.950e-2834.08Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0GN44_MICPS4.000e-2836.02Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A7S0KFF8_MICPS3.570e-2736.84Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
C1DZC0_MICCC2.630e-2637.37Uncharacterized protein n=1 Tax=Micromonas commoda... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11467contigP-wetherbeei_contig11467:299..1320 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FGW3
Model size649
Max annot lvl2880.D7FGW3|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.44e-32
EggNOG OGs2C9EE@1|root,2SQH4@2759|Eukaryota
Cds size648
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185912.7475293-CDS-P-wetherbeei_contig11467:298..6731683185912.7475293-CDS-P-wetherbeei_contig11467:298..673Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11467 299..673 +
1683185912.7559898-CDS-P-wetherbeei_contig11467:1046..13191683185912.7559898-CDS-P-wetherbeei_contig11467:1046..1319Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11467 1047..1319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11467.2.1prot_P-wetherbeei_contig11467.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11467 299..1319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11467.2.1

>prot_P-wetherbeei_contig11467.2.1 ID=prot_P-wetherbeei_contig11467.2.1|Name=mRNA_P-wetherbeei_contig11467.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=216bp
RRVLIYNRDRSRQLINAEEVAAQLRLRLPALASLAAAGAAGVAGTANAAG
TVAAAVRWEVDVMLHSNARHPCELVQRLHEVDVLVTPHGFQSMMILFLQP
GAVLFELYPYKYYKLGYKALAPATGVRYEFAMSEPQTLRHKLLLHYISTE
RCMSFYFCRSFARSDNVRMSDADVERVVALAGVSARRASGTPRRRRMQQR
LPAAGAVAGAAATGAG
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mRNA from alignment at P-wetherbeei_contig11467:299..1320+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11467.2.1 ID=mRNA_P-wetherbeei_contig11467.2.1|Name=mRNA_P-wetherbeei_contig11467.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1022bp|location=Sequence derived from alignment at P-wetherbeei_contig11467:299..1320+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCGCGTATTAATCTACAACCGGGACCGGTCGCGGCAGCTCATCAATGC CGAGGAAGTCGCAGCACAGCTGCGGTTGCGGCTGCCGGCGCTGGCGTCGC TGGCGGCGGCGGGCGCGGCGGGCGTAGCCGGCACGGCGAACGCGGCGGGC ACGGTAGCGGCGGCGGTGCGGTGGGAGGTGGACGTGATGCTGCATAGCAA CGCGCGGCACCCCTGCGAGCTGGTGCAGCGGCTGCACGAGGTGGACGTCT TGGTGACGCCCCACGGCTTCCAGAGCATGATGATCCTGTTCCTGCAGCCG GGCGCCGTCCTGTTCGAGCTCTACCCATACAAGTACTACAAGCTCGGCTA CAAGGCACTCGCGCCTGCCACCGGGGTGAGAAATGGGAGCAGAGGAGCCA GCTCACTCGTCTCGCTTCTTTCTATAAAGGTTGTGGGAGGGACGCGGTGG CTGCTCTGAAAAGGAATTTGTGGTTTGGCTCGTGGTCGGGCGGGGAGAGA CGGTGGGAATAAATAGGAATTCTCATTTCCGTTTGTGCATTTGTTTGCCT TTGATGCCTCATGCTTAGAGCTGGTTTGCAGGTAGTATTGTTCGCTTCTT GCATTAACCCAAACATTGGGTTGAACAGCAGTGTCAGTTTCCGCCCATAC GCAAGGATTGTTGGGGCTAGTTGACCTTAACTACTTCCTCGCGCTTTTGC ACATTTCCTTACCGCGCGCTATCTTCCCTTTTCCTGGCGCATCCATAGGT CCGGTATGAGTTTGCAATGTCGGAGCCGCAGACGCTCCGCCACAAGCTGC TCCTCCACTACATCAGCACGGAACGGTGCATGAGCTTCTACTTCTGCCGC TCCTTCGCCCGCTCCGACAACGTCCGCATGTCTGACGCCGACGTCGAGCG CGTCGTGGCGCTGGCGGGTGTCAGCGCTCGGCGGGCGTCGGGGACACCCC GCCGGCGGCGGATGCAGCAGCGGCTGCCGGCGGCGGGGGCGGTGGCGGGG GCGGCGGCGACGGGTGCCGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11467:299..1320+

>mRNA_P-wetherbeei_contig11467.2.1 ID=mRNA_P-wetherbeei_contig11467.2.1|Name=mRNA_P-wetherbeei_contig11467.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=648bp|location=Sequence derived from alignment at P-wetherbeei_contig11467:299..1320+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCGCGTATTAATCTACAACCGGGACCGGTCGCGGCAGCTCATCAATGC
CGAGGAAGTCGCAGCACAGCTGCGGTTGCGGCTGCCGGCGCTGGCGTCGC
TGGCGGCGGCGGGCGCGGCGGGCGTAGCCGGCACGGCGAACGCGGCGGGC
ACGGTAGCGGCGGCGGTGCGGTGGGAGGTGGACGTGATGCTGCATAGCAA
CGCGCGGCACCCCTGCGAGCTGGTGCAGCGGCTGCACGAGGTGGACGTCT
TGGTGACGCCCCACGGCTTCCAGAGCATGATGATCCTGTTCCTGCAGCCG
GGCGCCGTCCTGTTCGAGCTCTACCCATACAAGTACTACAAGCTCGGCTA
CAAGGCACTCGCGCCTGCCACCGGGGTCCGGTATGAGTTTGCAATGTCGG
AGCCGCAGACGCTCCGCCACAAGCTGCTCCTCCACTACATCAGCACGGAA
CGGTGCATGAGCTTCTACTTCTGCCGCTCCTTCGCCCGCTCCGACAACGT
CCGCATGTCTGACGCCGACGTCGAGCGCGTCGTGGCGCTGGCGGGTGTCA
GCGCTCGGCGGGCGTCGGGGACACCCCGCCGGCGGCGGATGCAGCAGCGG
CTGCCGGCGGCGGGGGCGGTGGCGGGGGCGGCGGCGACGGGTGCCGGT
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