mRNA_P-wetherbeei_contig11450.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11450.2.1
Unique NamemRNA_P-wetherbeei_contig11450.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11450.2.1 vs. uniprot
Match: A0A0N4VQR7_ENTVE (Uncharacterized protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4VQR7_ENTVE)

HSP 1 Score: 135 bits (340), Expect = 1.480e-37
Identity = 74/137 (54.01%), Postives = 80/137 (58.39%), Query Frame = 1
Query:    1 MKSESLVIADQQRCGEYVPGPCTHRPSRHE--------------------ILVSVVVWRGWXXXXXXXXXXXXXXXXXGLLVENWIVDASIFLWLCLMKGTWWMPWHQEPMKDVGACDKPWGVGNRAVIRGCPNGET 351
            MKSESLVIADQQRCGEYVPG CTHRPS HE                    +L+   V   W                  ++VEN IVDASIF+ +C      WMPWHQEPMKDV  CDKPWGVG RAVIRGCPNGET
Sbjct:    1 MKSESLVIADQQRCGEYVPGACTHRPSSHESWSFCEWNVGVLPVMGGVEGMLLGCGVSHVWWPVRCCVACVCAWCGVR-VVVENCIVDASIFI-VCDR----WMPWHQEPMKDVVTCDKPWGVGERAVIRGCPNGET 131          
BLAST of mRNA_P-wetherbeei_contig11450.2.1 vs. uniprot
Match: A0A1H2L8R3_9ACTO (Uncharacterized protein n=1 Tax=Arcanobacterium phocae TaxID=131112 RepID=A0A1H2L8R3_9ACTO)

HSP 1 Score: 96.7 bits (239), Expect = 4.770e-23
Identity = 49/72 (68.06%), Postives = 55/72 (76.39%), Query Frame = -1
Query:  174 FIQVQVTGHDSS*VSPFGHPRITARLPTPQGLSQAPTSFIGS*CQGIHHVPFIRHSHKKMLASTIQFSTNNP 389
            +IQ+ VT ++S  VSPFGHPRITARLPTP+GLSQA TSFIGS CQGIH      +   KMLASTIQFST  P
Sbjct:   13 YIQMLVTRNNSGQVSPFGHPRITARLPTPRGLSQATTSFIGSVCQGIHRTLLNTYKKPKMLASTIQFSTTTP 84          
BLAST of mRNA_P-wetherbeei_contig11450.2.1 vs. uniprot
Match: A0A653SCE4_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides sp. AX2bis TaxID=2653157 RepID=A0A653SCE4_9ACTN)

HSP 1 Score: 87.8 bits (216), Expect = 1.250e-19
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = -2
Query:  236 MTPARFPHSDTPGSQLGCQLPRAYRRLPRPSSALDAKASTMCP 364
            M PARFPHSDTPGSQLGCQLPRAYRRL RPSSALDAKASTMCP
Sbjct:    1 MIPARFPHSDTPGSQLGCQLPRAYRRLQRPSSALDAKASTMCP 43          
BLAST of mRNA_P-wetherbeei_contig11450.2.1 vs. uniprot
Match: A0A3A5M201_9MICC (Uncharacterized protein n=1 Tax=Arthrobacter cheniae TaxID=1258888 RepID=A0A3A5M201_9MICC)

HSP 1 Score: 86.3 bits (212), Expect = 4.280e-19
Identity = 45/86 (52.33%), Postives = 48/86 (55.81%), Query Frame = 1
Query:  175 GLLVENWIVDASIF--------------------LWLCLM-------KGTWWMPWHQEPMKDVGACDKPWGVGNRAVIRGCPNGET 351
            GLLVEN IVDASIF                      +C +       KGT WMPWHQEP KDVG CDKP GV NR +I GCPNGET
Sbjct:   40 GLLVENCIVDASIFKNKEAISMNNLVPDVCSGLVFSICFLILSGQVFKGTRWMPWHQEPKKDVGICDKPGGVDNRTLIPGCPNGET 125          
BLAST of mRNA_P-wetherbeei_contig11450.2.1 vs. uniprot
Match: A0A169NJN5_STRLU (Uncharacterized protein n=2 Tax=Streptomyces TaxID=1883 RepID=A0A169NJN5_STRLU)

HSP 1 Score: 79.7 bits (195), Expect = 6.900e-17
Identity = 40/67 (59.70%), Postives = 45/67 (67.16%), Query Frame = 1
Query:  181 LVENWIVDASIFLWLC--LMKGTWWMPWHQEPMKDVGACDKPWGVGNRAVIRGCPNGET*LESCPVT 375
            L+EN+ VDASI    C  + KG  WMPWHQEPMKDVG  D P G  N+A+IRG PNGET   S  VT
Sbjct:   38 LLENYTVDASI----CGQVFKGARWMPWHQEPMKDVGGHDSPRGAVNQALIRGFPNGETRQSSWAVT 100          
BLAST of mRNA_P-wetherbeei_contig11450.2.1 vs. uniprot
Match: A0A183CE60_GLOPA (Uncharacterized protein ycf68 n=1 Tax=Globodera pallida TaxID=36090 RepID=A0A183CE60_GLOPA)

HSP 1 Score: 77.4 bits (189), Expect = 1.130e-14
Identity = 40/67 (59.70%), Postives = 43/67 (64.18%), Query Frame = 1
Query:  181 LVENWIVDASIFLWLC--LMKGTWWMPWHQEPMKDVGACDKPWGVGNRAVIRGCPNGET*LESCPVT 375
            L EN  VDASI    C  + KG  WMPWHQEPMKDVG  D P G  N+A+IRG PNGET   S  VT
Sbjct:  180 LFENCTVDASI----CGQVFKGARWMPWHQEPMKDVGGHDSPRGAVNQALIRGFPNGETRQSSWAVT 242          
BLAST of mRNA_P-wetherbeei_contig11450.2.1 vs. uniprot
Match: A0A375I5U6_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Propionibacterium ruminifibrarum TaxID=1962131 RepID=A0A375I5U6_9ACTN)

HSP 1 Score: 77.4 bits (189), Expect = 2.660e-14
Identity = 48/93 (51.61%), Postives = 53/93 (56.99%), Query Frame = -3
Query:  157 AGNWT*LQLGFPIRTPPDHSSVANSPGLIAGSHVLHRLLMPRHPPCAL----HKTQPQ---------------KNARVHYPVLNQQPQPPTTP 378
            AG  T    GFPIR  PDHSS  NSPGLIAG +VLHRLL+PRHPP AL    H T+                 K+ARVHY VLN+Q  P   P
Sbjct:  161 AGLTTGSLQGFPIRKSPDHSSSTNSPGLIAGYNVLHRLLVPRHPPIALSSLPHNTRTPTTNSRHARTRQSKNYKDARVHYEVLNKQAAPHNQP 253          
BLAST of mRNA_P-wetherbeei_contig11450.2.1 vs. uniprot
Match: A0A1Y5P9J3_9MYCO (Uncharacterized protein n=1 Tax=uncultured Mycobacterium sp. TaxID=171292 RepID=A0A1Y5P9J3_9MYCO)

HSP 1 Score: 72.8 bits (177), Expect = 4.030e-14
Identity = 34/53 (64.15%), Postives = 38/53 (71.70%), Query Frame = -1
Query:  216 VTGHDSS*VSPFGHPRITARLPTPQGLSQAPTSFIGS*CQGIHHVPFIRHSHK 374
            VT H S  VSPFGHPRI ARL  P+G++Q PTSFIGS CQGIHH     + HK
Sbjct:    3 VTRHHSCRVSPFGHPRINARLTAPRGITQPPTSFIGSQCQGIHHALLNTYKHK 55          
BLAST of mRNA_P-wetherbeei_contig11450.2.1 vs. uniprot
Match: A0A679LVS8_CORDP (Uncharacterized protein n=2 Tax=Corynebacterium TaxID=1716 RepID=A0A679LVS8_CORDP)

HSP 1 Score: 70.1 bits (170), Expect = 2.220e-13
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1
Query:    1 MKSESLVIADQQRCGEYVPGPCTHRPSRHE 90
            MKSESLVIADQQRCGEYVPGPCTHRPSRHE
Sbjct:   48 MKSESLVIADQQRCGEYVPGPCTHRPSRHE 77          
BLAST of mRNA_P-wetherbeei_contig11450.2.1 vs. uniprot
Match: A0A645G000_9ZZZZ (Uncharacterized protein n=1 Tax=bioreactor metagenome TaxID=1076179 RepID=A0A645G000_9ZZZZ)

HSP 1 Score: 73.2 bits (178), Expect = 2.390e-13
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = -1
Query:  186 FIQVQVTGHDSS*--VSPFGHPRITARLPTPQGLSQAPTSFIGS*CQGIHHVPFIRHS-HKKMLASTIQFS 389
            +IQ +V GH+S    VS FG+PRIT  LPTP+GLSQ PTSFIGS C GIH +  +      KMLAST++FS
Sbjct:   48 YIQAEVAGHNSGTFKVSLFGNPRITVWLPTPRGLSQVPTSFIGSWCLGIHRLHLVACLLTTKMLASTVKFS 118          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11450.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0N4VQR7_ENTVE1.480e-3754.01Uncharacterized protein n=1 Tax=Enterobius vermicu... [more]
A0A1H2L8R3_9ACTO4.770e-2368.06Uncharacterized protein n=1 Tax=Arcanobacterium ph... [more]
A0A653SCE4_9ACTN1.250e-1995.35Uncharacterized protein n=1 Tax=Nocardioides sp. A... [more]
A0A3A5M201_9MICC4.280e-1952.33Uncharacterized protein n=1 Tax=Arthrobacter cheni... [more]
A0A169NJN5_STRLU6.900e-1759.70Uncharacterized protein n=2 Tax=Streptomyces TaxID... [more]
A0A183CE60_GLOPA1.130e-1459.70Uncharacterized protein ycf68 n=1 Tax=Globodera pa... [more]
A0A375I5U6_9ACTN2.660e-1451.61Uncharacterized protein (Fragment) n=1 Tax=Propion... [more]
A0A1Y5P9J3_9MYCO4.030e-1464.15Uncharacterized protein n=1 Tax=uncultured Mycobac... [more]
A0A679LVS8_CORDP2.220e-13100.00Uncharacterized protein n=2 Tax=Corynebacterium Ta... [more]
A0A645G000_9ZZZZ2.390e-1357.75Uncharacterized protein n=1 Tax=bioreactor metagen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11450contigP-wetherbeei_contig11450:18..838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1120933.ATUY01000023_gene1
Model size395
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.07e-13
EggNOG OGs2B47U@1|root,31WZ2@2|Bacteria,2IPAW@201174|Actinobacteria,4D6JC@85005|Actinomycetales
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185912.1533816-CDS-P-wetherbeei_contig11450:17..1081683185912.1533816-CDS-P-wetherbeei_contig11450:17..108Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11450 18..108 +
1683185912.174788-CDS-P-wetherbeei_contig11450:440..5781683185912.174788-CDS-P-wetherbeei_contig11450:440..578Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11450 441..578 +
1683185912.1874108-CDS-P-wetherbeei_contig11450:672..7971683185912.1874108-CDS-P-wetherbeei_contig11450:672..797Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11450 673..797 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185912.196729-UTR-P-wetherbeei_contig11450:797..8381683185912.196729-UTR-P-wetherbeei_contig11450:797..838Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11450 798..838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11450.2.1prot_P-wetherbeei_contig11450.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11450 18..797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11450.2.1

>prot_P-wetherbeei_contig11450.2.1 ID=prot_P-wetherbeei_contig11450.2.1|Name=mRNA_P-wetherbeei_contig11450.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
MKSESLVIADQQRCGEYVPGPCTHRPSRHEILVSVVVWRGWGWWSWLWCC
PCGGGGGLGLLVENWIVDASIFLWLCLMKGTWWMPWHQEPMKDVGACDKP
WGVGNRAVIRGCPNGET*
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mRNA from alignment at P-wetherbeei_contig11450:18..838+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11450.2.1 ID=mRNA_P-wetherbeei_contig11450.2.1|Name=mRNA_P-wetherbeei_contig11450.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=821bp|location=Sequence derived from alignment at P-wetherbeei_contig11450:18..838+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGTCGGAGTCGCTAGTAATCGCAGATCAGCAACGCTGCGGTGAATA CGTTCCCGGGCCTTGTACACACCGCCCGTCACGTCACGAAAGTCGGCAAC ACCCGAAGCCCATGGCCTAACCCGTTTACGGGAGGGAGTGGTCGAAGGTG GGGTTGGCGATTGGGACGAAGTCGTAACAAGGTAGCCGTACCGGAAGGTG CGGCTGGATCACCTCCTTTCTAAGGAGTTTCATCTTTTTAGAGATGACCT GCCCGGTTCTGGGTGTTCGTGTCCGTTCGTGGCACGCGTCTGGTGGGTGG GTTGTGGAACGTCGACTTTCCTTTGCTTGGTGTTCTGGTTGGGCTGCTCC TTTGTGGGGTGGTTTGGTTGGGGTGTTGGGTGGGGGGTCACACATTGTTG GGTGTCTGAGGCACCACGCGTAGTCCTTGTGTCCGTTGTTGTTTGGCGGG GGTGGGGGTGGTGGTCCTGGCTCTGGTGCTGTCCCTGTGGGGGTGGTGGG GGGTTGGGGTTGTTGGTTGAGAACTGGATAGTGGACGCGAGCATTTTTTT GTGGCTGTGTCGTCGCACGTGTTGTGTGTGCCTGCTGGTGACCCTGTCTT CCTTTTTTGGGGGGTGGGGTGGTTGGTGGGTGTGTGTGGTGTGTGTGGTG GCAAGTTATGAAGGGCACATGGTGGATGCCTTGGCATCAAGAGCCGATGA AGGACGTGGGAGCCTGCGATAAGCCCTGGGGAGTTGGCAACCGAGCTGTG ATCCGGGGGTGTCCGAATGGGGAAACCTAGCTGGAGTCATGTCCAGTTAC CTGCACCTGAATGAAATAGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11450:18..838+

>mRNA_P-wetherbeei_contig11450.2.1 ID=mRNA_P-wetherbeei_contig11450.2.1|Name=mRNA_P-wetherbeei_contig11450.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig11450:18..838+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGTCGGAGTCGCTAGTAATCGCAGATCAGCAACGCTGCGGTGAATA
CGTTCCCGGGCCTTGTACACACCGCCCGTCACGTCACGAAATCCTTGTGT
CCGTTGTTGTTTGGCGGGGGTGGGGGTGGTGGTCCTGGCTCTGGTGCTGT
CCCTGTGGGGGTGGTGGGGGGTTGGGGTTGTTGGTTGAGAACTGGATAGT
GGACGCGAGCATTTTTTTGTGGCTGTGTCTTATGAAGGGCACATGGTGGA
TGCCTTGGCATCAAGAGCCGATGAAGGACGTGGGAGCCTGCGATAAGCCC
TGGGGAGTTGGCAACCGAGCTGTGATCCGGGGGTGTCCGAATGGGGAAAC
CTAG
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