mRNA_P-wetherbeei_contig11448.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11448.2.1
Unique NamemRNA_P-wetherbeei_contig11448.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11448.2.1 vs. uniprot
Match: A0A7S2UKR4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKR4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.190e-10
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   13 ARAIFERGLAVDPHHAPLFHELAQLEALVGNVEGLARLDRLARRLYPEDVL 165
            AR + E+GL VDP HAPL+H LA+LEA V N+EGLA+L++ A +++  + L
Sbjct:   16 ARELLEKGLEVDPLHAPLYHSLAELEARVFNIEGLAKLNKRAAKVFNTNAL 66
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BLAST of mRNA_P-wetherbeei_contig11448.2.1 vs. uniprot
Match: A0A7S2LJ06_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LJ06_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.540e-9
Identity = 24/49 (48.98%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   13 ARAIFERGLAVDPHHAPLFHELAQLEALVGNVEGLARLDRLARRLYPED 159
            AR + E+G+ ++P HAPL+H LA+LEA V N+EGLA+L++ A  ++  D
Sbjct:    1 ARELLEKGMEINPLHAPLYHSLAELEARVFNIEGLAKLNKRAAEIFQSD 49
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BLAST of mRNA_P-wetherbeei_contig11448.2.1 vs. uniprot
Match: A0A7S1GMC4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GMC4_CYCTE)

HSP 1 Score: 54.7 bits (130), Expect = 2.950e-7
Identity = 25/51 (49.02%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   13 ARAIFERGLAVDPHHAPLFHELAQLEALVGNVEGLARLDRLARRLYPEDVL 165
            AR + E GL ++P +APL+H LA+LEA + NVEGLA+L+R A  ++  + L
Sbjct:  366 ARDVMEEGLRMNPRYAPLYHSLAELEARIFNVEGLAKLNRRAAAVFNANAL 416
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BLAST of mRNA_P-wetherbeei_contig11448.2.1 vs. uniprot
Match: F0Y659_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y659_AURAN)

HSP 1 Score: 50.4 bits (119), Expect = 9.390e-6
Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:    1 DLAAARAIFERGLAVDPHHAPLFHELAQLEALVGNVEGLARLDRLARRLYPEDVL 165
            D    RA   RGL   P++A L+H  A+LEA++GN++GLA+L   AR  +P  +L
Sbjct: 1311 DFGGCRAALARGLDDAPNYAHLWHAAAELEAILGNLDGLAKLHERARDAFPSGLL 1365
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BLAST of mRNA_P-wetherbeei_contig11448.2.1 vs. uniprot
Match: A0A7S4ERE6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ERE6_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 4.490e-5
Identity = 19/51 (37.25%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   13 ARAIFERGLAVDPHHAPLFHELAQLEALVGNVEGLARLDRLARRLYPEDVL 165
            AR ++E G+  +P +APL+H LA+LEA++ N++ LA+L++    L+  + +
Sbjct:  951 ARDVYEEGIESNPLYAPLYHSLAELEAMICNLDALAKLNKRTNELFNNNAM 1001
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11448.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S2UKR4_9STRA6.190e-1052.94Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2LJ06_9STRA4.540e-948.98Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1GMC4_CYCTE2.950e-749.02Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
F0Y659_AURAN9.390e-643.64Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S4ERE6_9STRA4.490e-537.25Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11448contigP-wetherbeei_contig11448:1987..2151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009035660.1
Model size165
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.54e-06
EggNOG OGs29BB7@1|root,2RIE8@2759|Eukaryota
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185911.987957-CDS-P-wetherbeei_contig11448:1986..21511683185911.987957-CDS-P-wetherbeei_contig11448:1986..2151Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11448 1987..2151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11448.2.1prot_P-wetherbeei_contig11448.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11448 1987..2151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11448.2.1

>prot_P-wetherbeei_contig11448.2.1 ID=prot_P-wetherbeei_contig11448.2.1|Name=mRNA_P-wetherbeei_contig11448.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=55bp
DLAAARAIFERGLAVDPHHAPLFHELAQLEALVGNVEGLARLDRLARRLY
PEDVL
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mRNA from alignment at P-wetherbeei_contig11448:1987..2151-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11448.2.1 ID=mRNA_P-wetherbeei_contig11448.2.1|Name=mRNA_P-wetherbeei_contig11448.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig11448:1987..2151- (Phaeothamnion wetherbeei SAG_119_79)
GACCTCGCCGCCGCCCGCGCCATCTTCGAGCGCGGGCTGGCCGTTGACCC
GCACCACGCGCCGCTCTTCCACGAACTGGCGCAGCTCGAGGCGCTGGTCG
GCAACGTGGAAGGTTTGGCGCGACTGGATCGGCTGGCCCGGCGGCTTTAC
CCCGAGGACGTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11448:1987..2151-

>mRNA_P-wetherbeei_contig11448.2.1 ID=mRNA_P-wetherbeei_contig11448.2.1|Name=mRNA_P-wetherbeei_contig11448.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig11448:1987..2151- (Phaeothamnion wetherbeei SAG_119_79)
GACCTCGCCGCCGCCCGCGCCATCTTCGAGCGCGGGCTGGCCGTTGACCC
GCACCACGCGCCGCTCTTCCACGAACTGGCGCAGCTCGAGGCGCTGGTCG
GCAACGTGGAAGGTTTGGCGCGACTGGATCGGCTGGCCCGGCGGCTTTAC
CCCGAGGACGTGCTG
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