mRNA_P-wetherbeei_contig11443.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11443.1.1
Unique NamemRNA_P-wetherbeei_contig11443.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11443.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11443contigP-wetherbeei_contig11443:228..1139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size768
Hectar predicted targeting categoryother localisation
Exons2
Cds size768
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185911.8284674-CDS-P-wetherbeei_contig11443:227..6161683185911.8284674-CDS-P-wetherbeei_contig11443:227..616Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11443 228..616 -
1683185911.8377364-CDS-P-wetherbeei_contig11443:760..11391683185911.8377364-CDS-P-wetherbeei_contig11443:760..1139Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11443 761..1139 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11443.1.1prot_P-wetherbeei_contig11443.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11443 228..1139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11443.1.1

>prot_P-wetherbeei_contig11443.1.1 ID=prot_P-wetherbeei_contig11443.1.1|Name=mRNA_P-wetherbeei_contig11443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=256bp
LNGDIVNIKGASGAVVDGAGSVQLFRVATGGTLHLSDLLLTGGFTRNRGG
AVYIEKGAVASFTSCTFASNTATSGGGVSNDGTVDSMDECTFTENTATRG
GGVYNGRGTVASMSSCTFTSNKADLGADQNGGGGVANEGIVTSMSDCIFN
NNTADQGGGGGVANEGIVTSMSDCTFYNNTASGGGGVFGYGGIVESMSSC
TFTNNMADDGGGVLNGNTLTTMRNCTFNNNTAGYGGGVSNYGTVESMSDC
TFTKNT
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mRNA from alignment at P-wetherbeei_contig11443:228..1139-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11443.1.1 ID=mRNA_P-wetherbeei_contig11443.1.1|Name=mRNA_P-wetherbeei_contig11443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=912bp|location=Sequence derived from alignment at P-wetherbeei_contig11443:228..1139- (Phaeothamnion wetherbeei SAG_119_79)
TTGAACGGCGATATCGTGAACATCAAGGGTGCGTCAGGCGCAGTCGTCGA
CGGCGCTGGCAGCGTGCAGCTGTTCAGGGTGGCAACAGGTGGCACACTGC
ATCTGAGTGACTTGCTGCTGACTGGCGGGTTCACAAGAAATCGCGGTGGT
GCTGTGTACATCGAGAAGGGCGCTGTCGCATCGTTCACGTCGTGCACCTT
CGCCAGCAACACGGCAACTTCCGGCGGCGGCGTCTCTAATGACGGAACCG
TGGATAGCATGGATGAGTGCACCTTCACAGAAAACACGGCCACCCGGGGC
GGCGGCGTCTACAATGGCCGCGGCACTGTGGCGAGCATGAGCTCGTGCAC
CTTCACCAGCAACAAGGCGGACCTGGGCGGTGGCGTCTACAATTACTTAG
GCACTGTGAGGAGCATGAGTAATTCTATCTTCACCAACAACACGGCGGGC
TACGGCGGCGGCGTCCGCAATTTCCTCGGCACTGTGAAGAGCATGAGGAA
CTGCACCTTCGCCAACAACACAGCGGACCAAAACGGCGGCGGCGGCGTCG
CCAATGAAGGCATCGTGACGAGCATGAGCGACTGCATCTTCAACAACAAC
ACGGCGGACCAGGGCGGCGGCGGCGGCGTCGCCAATGAAGGCATCGTGAC
GAGCATGAGCGACTGCACCTTCTACAACAACACAGCGTCTGGAGGCGGCG
GCGTCTTCGGATACGGCGGCATCGTGGAGAGCATGAGCTCGTGCACCTTC
ACCAACAACATGGCGGACGACGGCGGCGGCGTGTTAAATGGTAACACCTT
GACTACCATGAGAAACTGCACCTTCAACAACAACACGGCAGGCTACGGCG
GCGGCGTCTCCAATTACGGCACAGTGGAGAGCATGAGCGACTGCACCTTT
ACCAAAAACACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11443:228..1139-

>mRNA_P-wetherbeei_contig11443.1.1 ID=mRNA_P-wetherbeei_contig11443.1.1|Name=mRNA_P-wetherbeei_contig11443.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=768bp|location=Sequence derived from alignment at P-wetherbeei_contig11443:228..1139- (Phaeothamnion wetherbeei SAG_119_79)
TTGAACGGCGATATCGTGAACATCAAGGGTGCGTCAGGCGCAGTCGTCGA
CGGCGCTGGCAGCGTGCAGCTGTTCAGGGTGGCAACAGGTGGCACACTGC
ATCTGAGTGACTTGCTGCTGACTGGCGGGTTCACAAGAAATCGCGGTGGT
GCTGTGTACATCGAGAAGGGCGCTGTCGCATCGTTCACGTCGTGCACCTT
CGCCAGCAACACGGCAACTTCCGGCGGCGGCGTCTCTAATGACGGAACCG
TGGATAGCATGGATGAGTGCACCTTCACAGAAAACACGGCCACCCGGGGC
GGCGGCGTCTACAATGGCCGCGGCACTGTGGCGAGCATGAGCTCGTGCAC
CTTCACCAGCAACAAGGCGGACCTGGGCGCGGACCAAAACGGCGGCGGCG
GCGTCGCCAATGAAGGCATCGTGACGAGCATGAGCGACTGCATCTTCAAC
AACAACACGGCGGACCAGGGCGGCGGCGGCGGCGTCGCCAATGAAGGCAT
CGTGACGAGCATGAGCGACTGCACCTTCTACAACAACACAGCGTCTGGAG
GCGGCGGCGTCTTCGGATACGGCGGCATCGTGGAGAGCATGAGCTCGTGC
ACCTTCACCAACAACATGGCGGACGACGGCGGCGGCGTGTTAAATGGTAA
CACCTTGACTACCATGAGAAACTGCACCTTCAACAACAACACGGCAGGCT
ACGGCGGCGGCGTCTCCAATTACGGCACAGTGGAGAGCATGAGCGACTGC
ACCTTTACCAAAAACACG
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