mRNA_P-wetherbeei_contig11430.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11430.2.1
Unique NamemRNA_P-wetherbeei_contig11430.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11430.2.1 vs. uniprot
Match: A0A523P5U5_9PROT (Cytochrom_C_asm domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P5U5_9PROT)

HSP 1 Score: 86.3 bits (212), Expect = 4.580e-19
Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 1
Query:    1 IVFSALAWTTFAVLLVGRYQWHWRGRRAVKFLIAGFVLLALGFFGSKFVLELVLHR 168
            IVFS LAW  FA+L+VGR+++ WRGRRA+K++I GFVLLALGFFG+K VLEL+LHR
Sbjct:  212 IVFSLLAWGVFAILIVGRWRFGWRGRRAIKYVIFGFVLLALGFFGTKVVLELILHR 267          
BLAST of mRNA_P-wetherbeei_contig11430.2.1 vs. uniprot
Match: A0A3D5DI17_9GAMM (Phosphohydrolase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DI17_9GAMM)

HSP 1 Score: 81.3 bits (199), Expect = 3.650e-17
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    1 IVFSALAWTTFAVLLVGRYQWHWRGRRAVKFLIAGFVLLALGFFGSKFVLELVLHR 168
            I FSA+AW  FA LL GR+++ WRGRRA+K++++GF  LALGFFGSK VLELVLHR
Sbjct:  212 ITFSAIAWGVFATLLYGRWRFGWRGRRAIKYVLSGFTSLALGFFGSKAVLELVLHR 267          
BLAST of mRNA_P-wetherbeei_contig11430.2.1 vs. uniprot
Match: A0A3M1DM00_9GAMM (Cytochrom_C_asm domain-containing protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1DM00_9GAMM)

HSP 1 Score: 76.3 bits (186), Expect = 1.830e-15
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 1
Query:    4 VFSALAWTTFAVLLVGRYQWHWRGRRAVKFLIAGFVLLALGFFGSKFVLELVLHR 168
            V S +AW  FAVLL GR+Q  WRGR A+++ +AGF+LL LG+FGSK VLELVLHR
Sbjct:  181 VLSMIAWVVFAVLLWGRWQRGWRGRLAIRYTLAGFILLMLGYFGSKVVLELVLHR 235          
BLAST of mRNA_P-wetherbeei_contig11430.2.1 vs. uniprot
Match: A0A1F6VEP1_9PROT (Cytochrom_C_asm domain-containing protein n=1 Tax=Candidatus Muproteobacteria bacterium RBG_16_60_9 TaxID=1817755 RepID=A0A1F6VEP1_9PROT)

HSP 1 Score: 76.6 bits (187), Expect = 2.090e-15
Identity = 33/56 (58.93%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    1 IVFSALAWTTFAVLLVGRYQWHWRGRRAVKFLIAGFVLLALGFFGSKFVLELVLHR 168
            +V +ALAW  + VLL+GR+++ WRGR A+++ + GF LL LG+FGSKFVLE+VLHR
Sbjct:  215 VVLAALAWVVYGVLLIGRWRFGWRGRTAIRWTLGGFALLLLGYFGSKFVLEVVLHR 270          
BLAST of mRNA_P-wetherbeei_contig11430.2.1 vs. uniprot
Match: UPI00198499AB (Cytochrome c biogenesis protein CcsA n=2 Tax=Burkholderiales TaxID=80840 RepID=UPI00198499AB)

HSP 1 Score: 75.5 bits (184), Expect = 6.650e-15
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 1
Query:    4 VFSALAWTTFAVLLVGRYQWHWRGRRAVKFLIAGFVLLALGFFGSKFVLELVLHR 168
            +FS L+W  FA+LLVGRYQ+ WRGR+AV++L AG  LL L + GS+FV+E+VLHR
Sbjct:  226 IFSVLSWLVFAILLVGRYQFGWRGRQAVRWLYAGSTLLLLAYVGSRFVMEVVLHR 280          
BLAST of mRNA_P-wetherbeei_contig11430.2.1 vs. uniprot
Match: A0A1B2LWT7_9GAMM (Cytochrome C assembly protein n=1 Tax=Acinetobacter larvae TaxID=1789224 RepID=A0A1B2LWT7_9GAMM)

HSP 1 Score: 74.3 bits (181), Expect = 1.560e-14
Identity = 31/54 (57.41%), Postives = 45/54 (83.33%), Query Frame = 1
Query:    7 FSALAWTTFAVLLVGRYQWHWRGRRAVKFLIAGFVLLALGFFGSKFVLELVLHR 168
            FS ++W  +  LL+G Y++ WRG++A++F I GF+LLALGFFGSKFVL+L+L+R
Sbjct:  218 FSIISWFVYGALLIGHYKFGWRGQKAIRFTITGFLLLALGFFGSKFVLQLILNR 271          
BLAST of mRNA_P-wetherbeei_contig11430.2.1 vs. uniprot
Match: A0A0A0DL54_9BURK (Cytochrom_C_asm domain-containing protein n=1 Tax=Aquabacterium sp. NJ1 TaxID=1538295 RepID=A0A0A0DL54_9BURK)

HSP 1 Score: 74.3 bits (181), Expect = 1.850e-14
Identity = 34/56 (60.71%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    4 VFSALAWTTFAVLLVGRYQWHWRGRRAVKFLIAGFVLLALGFFGSKFVLELVLHRA 171
            +FS L+W  FAVLL+GR ++ WRGR+AV++L+AG  LL L + GS+FVLE+VLHRA
Sbjct:  229 IFSVLSWLVFAVLLIGRARFGWRGRQAVRWLVAGSALLLLAYVGSRFVLEVVLHRA 284          
BLAST of mRNA_P-wetherbeei_contig11430.2.1 vs. uniprot
Match: UPI000F07646A (cytochrome c biogenesis protein CcsA n=1 Tax=Acinetobacter TaxID=469 RepID=UPI000F07646A)

HSP 1 Score: 73.9 bits (180), Expect = 2.130e-14
Identity = 32/55 (58.18%), Postives = 44/55 (80.00%), Query Frame = 1
Query:    4 VFSALAWTTFAVLLVGRYQWHWRGRRAVKFLIAGFVLLALGFFGSKFVLELVLHR 168
            VFS ++W  +AVLL+G Y + WRG++A++F + GF LLALGF GSKFVLE++L R
Sbjct:  215 VFSLMSWLVYAVLLIGHYAFGWRGQKAIRFTLIGFALLALGFIGSKFVLEMILAR 269          
BLAST of mRNA_P-wetherbeei_contig11430.2.1 vs. uniprot
Match: A0A519FQ10_9BURK (Cytochrome C assembly protein n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=A0A519FQ10_9BURK)

HSP 1 Score: 73.9 bits (180), Expect = 2.580e-14
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 1
Query:    4 VFSALAWTTFAVLLVGRYQWHWRGRRAVKFLIAGFVLLALGFFGSKFVLELVLHR 168
            VFS L+W  FA+LL+GRY++ WRGR+AV++L AG  LL L + GS+FV+E+VLHR
Sbjct:  229 VFSVLSWLVFAILLIGRYRFGWRGRQAVRWLYAGSTLLLLAYVGSRFVMEVVLHR 283          
BLAST of mRNA_P-wetherbeei_contig11430.2.1 vs. uniprot
Match: A0A7W1L4P5_9PROT (Cytochrome c biogenesis protein CcsA n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7W1L4P5_9PROT)

HSP 1 Score: 73.6 bits (179), Expect = 2.830e-14
Identity = 32/55 (58.18%), Postives = 46/55 (83.64%), Query Frame = 1
Query:    4 VFSALAWTTFAVLLVGRYQWHWRGRRAVKFLIAGFVLLALGFFGSKFVLELVLHR 168
            +FS L W TFA+LL+GR+++ WRGRRA+++++AG VLL LG+ GSKFV E++L R
Sbjct:  211 LFSVLGWLTFAILLIGRWRYGWRGRRALRWIVAGTVLLVLGYLGSKFVSEILLGR 265          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11430.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A523P5U5_9PROT4.580e-1971.43Cytochrom_C_asm domain-containing protein n=1 Tax=... [more]
A0A3D5DI17_9GAMM3.650e-1767.86Phosphohydrolase n=1 Tax=Gammaproteobacteria bacte... [more]
A0A3M1DM00_9GAMM1.830e-1565.45Cytochrom_C_asm domain-containing protein (Fragmen... [more]
A0A1F6VEP1_9PROT2.090e-1558.93Cytochrom_C_asm domain-containing protein n=1 Tax=... [more]
UPI00198499AB6.650e-1561.82Cytochrome c biogenesis protein CcsA n=2 Tax=Burkh... [more]
A0A1B2LWT7_9GAMM1.560e-1457.41Cytochrome C assembly protein n=1 Tax=Acinetobacte... [more]
A0A0A0DL54_9BURK1.850e-1460.71Cytochrom_C_asm domain-containing protein n=1 Tax=... [more]
UPI000F07646A2.130e-1458.18cytochrome c biogenesis protein CcsA n=1 Tax=Acine... [more]
A0A519FQ10_9BURK2.580e-1460.00Cytochrome C assembly protein n=1 Tax=Rubrivivax s... [more]
A0A7W1L4P5_9PROT2.830e-1458.18Cytochrome c biogenesis protein CcsA n=1 Tax=Betap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11430contigP-wetherbeei_contig11430:1981..2154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1538295.JY96_03770
Preferred nameypjD
PFAMsCytochrom_C_asm
Model size174
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.04e-15
EggNOG OGsCOG4137@1|root,COG4137@2|Bacteria,1R3YD@1224|Proteobacteria,2VK0H@28216|Betaproteobacteria,1KKR4@119065|unclassified Burkholderiales
DescriptionCytochrome C assembly protein
Cds size174
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185911.362582-CDS-P-wetherbeei_contig11430:1980..21541683185911.362582-CDS-P-wetherbeei_contig11430:1980..2154Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11430 1981..2154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11430.2.1prot_P-wetherbeei_contig11430.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11430 1981..2154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11430.2.1

>prot_P-wetherbeei_contig11430.2.1 ID=prot_P-wetherbeei_contig11430.2.1|Name=mRNA_P-wetherbeei_contig11430.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp
IVFSALAWTTFAVLLVGRYQWHWRGRRAVKFLIAGFVLLALGFFGSKFVL
ELVLHRA*
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mRNA from alignment at P-wetherbeei_contig11430:1981..2154-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11430.2.1 ID=mRNA_P-wetherbeei_contig11430.2.1|Name=mRNA_P-wetherbeei_contig11430.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig11430:1981..2154- (Phaeothamnion wetherbeei SAG_119_79)
ATTGTATTTTCCGCCTTGGCCTGGACGACGTTTGCGGTGCTGCTGGTGGG GCGCTACCAGTGGCACTGGCGCGGCCGGCGCGCGGTGAAATTCCTGATCG CCGGCTTTGTGCTGCTGGCGCTCGGCTTCTTCGGTTCGAAATTCGTACTC GAACTCGTCCTGCACCGCGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11430:1981..2154-

>mRNA_P-wetherbeei_contig11430.2.1 ID=mRNA_P-wetherbeei_contig11430.2.1|Name=mRNA_P-wetherbeei_contig11430.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig11430:1981..2154- (Phaeothamnion wetherbeei SAG_119_79)
ATTGTATTTTCCGCCTTGGCCTGGACGACGTTTGCGGTGCTGCTGGTGGG
GCGCTACCAGTGGCACTGGCGCGGCCGGCGCGCGGTGAAATTCCTGATCG
CCGGCTTTGTGCTGCTGGCGCTCGGCTTCTTCGGTTCGAAATTCGTACTC
GAACTCGTCCTGCACCGCGCCTGA
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