mRNA_P-wetherbeei_contig11428.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11428.1.1
Unique NamemRNA_P-wetherbeei_contig11428.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11428.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11428contigP-wetherbeei_contig11428:240..937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size698
Hectar predicted targeting categoryother localisation
Exons1
Cds size513
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185911.236772-UTR-P-wetherbeei_contig11428:239..2471683185911.236772-UTR-P-wetherbeei_contig11428:239..247Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11428 240..247 -
1683185911.2546694-UTR-P-wetherbeei_contig11428:760..9371683185911.2546694-UTR-P-wetherbeei_contig11428:760..937Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11428 761..937 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185911.2461097-CDS-P-wetherbeei_contig11428:247..7601683185911.2461097-CDS-P-wetherbeei_contig11428:247..760Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11428 248..760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11428.1.1prot_P-wetherbeei_contig11428.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11428 248..760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11428.1.1

>prot_P-wetherbeei_contig11428.1.1 ID=prot_P-wetherbeei_contig11428.1.1|Name=mRNA_P-wetherbeei_contig11428.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
MRIEVWGESDDRGMGGLWAGTENWGPQVAFALLLLDVCSLSWRVRRRGKN
GRLQAFTTASTTCCRLLSNLLLFFSSSVPYGAEAGALWATKKDFGRNCLL
PPASLAATLSSSVSFTYPLRRIGPLLSFFPPSPLLSLSFSCPVYTPDPFR
QFSRSPQPLCLLLIPLLANS*
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mRNA from alignment at P-wetherbeei_contig11428:240..937-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11428.1.1 ID=mRNA_P-wetherbeei_contig11428.1.1|Name=mRNA_P-wetherbeei_contig11428.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=698bp|location=Sequence derived from alignment at P-wetherbeei_contig11428:240..937- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCGTGTACCGGCCTTGCTGCGGCTGCCACGGCGAGCTCGCGGTCAGG
CGCCAGCCAGCTGCAGGTCGAGGAGTGGAATAAACAAGGTATACCTTAGA
ACGGAAGAGGTGCAGACAGAGAGGGAAAGGAAGGAGGGAGAGATCTGGGC
AGAGAGTGAGAATTGGGGCGGGCAGCGATGAGAATTGAGGTTTGGGGCGA
AAGCGATGATAGGGGGATGGGAGGGCTCTGGGCAGGGACTGAGAACTGGG
GGCCCCAAGTAGCCTTCGCCTTGCTTCTTTTGGATGTCTGCAGCCTGTCA
TGGAGGGTCAGACGGCGGGGCAAGAATGGGCGCCTCCAGGCCTTCACAAC
CGCCTCCACAACCTGCTGCCGTTTGCTGTCGAATCTCCTTTTGTTTTTTT
CTTCCTCCGTTCCTTATGGGGCGGAGGCGGGAGCTCTTTGGGCGACCAAG
AAGGACTTCGGAAGAAACTGCCTTTTGCCGCCCGCCTCCTTGGCTGCAAC
ACTTTCTTCCTCCGTTTCCTTCACTTATCCCCTTCGCCGGATCGGCCCCT
TGCTCTCCTTCTTCCCTCCTTCGCCTCTGCTGTCCCTTTCTTTCTCTTGC
CCTGTTTATACTCCAGACCCGTTTCGCCAGTTTTCTCGCTCCCCCCAACC
TCTTTGCTTGCTTCTCATTCCTCTCCTGGCAAACAGCTGAGTGGGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11428:240..937-

>mRNA_P-wetherbeei_contig11428.1.1 ID=mRNA_P-wetherbeei_contig11428.1.1|Name=mRNA_P-wetherbeei_contig11428.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig11428:240..937- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGAATTGAGGTTTGGGGCGAAAGCGATGATAGGGGGATGGGAGGGCT
CTGGGCAGGGACTGAGAACTGGGGGCCCCAAGTAGCCTTCGCCTTGCTTC
TTTTGGATGTCTGCAGCCTGTCATGGAGGGTCAGACGGCGGGGCAAGAAT
GGGCGCCTCCAGGCCTTCACAACCGCCTCCACAACCTGCTGCCGTTTGCT
GTCGAATCTCCTTTTGTTTTTTTCTTCCTCCGTTCCTTATGGGGCGGAGG
CGGGAGCTCTTTGGGCGACCAAGAAGGACTTCGGAAGAAACTGCCTTTTG
CCGCCCGCCTCCTTGGCTGCAACACTTTCTTCCTCCGTTTCCTTCACTTA
TCCCCTTCGCCGGATCGGCCCCTTGCTCTCCTTCTTCCCTCCTTCGCCTC
TGCTGTCCCTTTCTTTCTCTTGCCCTGTTTATACTCCAGACCCGTTTCGC
CAGTTTTCTCGCTCCCCCCAACCTCTTTGCTTGCTTCTCATTCCTCTCCT
GGCAAACAGCTGA
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