mRNA_P-wetherbeei_contig11426.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11426.1.1
Unique NamemRNA_P-wetherbeei_contig11426.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11426.1.1 vs. uniprot
Match: A0A7S0KV63_MICPS (Hypothetical protein n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0KV63_MICPS)

HSP 1 Score: 107 bits (268), Expect = 4.480e-26
Identity = 55/116 (47.41%), Postives = 73/116 (62.93%), Query Frame = 1
Query:   10 VTSQPGFLRQRFQVLHNSAQYIVLNKPFDTRLNFP-GKPGSADGGPAFPEERTVAGEVARLCAEMDVMRFCHQLDYATSGILVTAKSQEAAGKCAALFRKRTAEKTYTAVVFGHPE 354
            +  QP  L + F ++H  A Y V+NKP+  RL+ P G PG     P +P + +V   + R   + D +RFCHQLD ATSG+LV A ++ AAG  A LFR+R A KTY A+VFGHPE
Sbjct:   51 IARQPQSLERDFHLVHEDADYAVVNKPWCVRLDTPRGWPGKVRFTPKYPGDLSVEDWLERRYPDWDTVRFCHQLDNATSGVLVAASNKRAAGAAAKLFRERRARKTYLAIVFGHPE 166          
BLAST of mRNA_P-wetherbeei_contig11426.1.1 vs. uniprot
Match: A0A0G4FEV8_VITBC (PseudoU_synth_2 domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FEV8_VITBC)

HSP 1 Score: 94.4 bits (233), Expect = 1.350e-20
Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 1
Query:   10 VTSQPGFLRQRFQVLHNSAQYIVLNKPFDTRLNFPGKPGSADGGPAFPEERTVAGEVARLCAEMDVMRFCHQLDYATSGILVTAKSQEAAGKCAALFRKRTAEKTYTAVVFGHP 351
            + +QP  L +  +V+H    Y+V++KP + R++ P           +  E TVA    R C   D +R CHQLD+ATSG+LV  K++EA G+CA LF +R A K Y A+V+GHP
Sbjct:  112 IANQPWCLERAIKVVHECEGYVVIDKPDNVRMDVPRTKSHK-----YDRELTVADWFKRRCPSSDKVRPCHQLDHATSGVLVMGKTKEATGRCAVLFSQRKARKQYLALVYGHP 220          
BLAST of mRNA_P-wetherbeei_contig11426.1.1 vs. uniprot
Match: K8EIZ1_9CHLO (Pseudouridine synthase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EIZ1_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 1.900e-19
Identity = 55/122 (45.08%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 KAFVTSQPGFLRQRFQVLHNSAQ--YIVLNKPFDTRLNFP-GKPGSADGGPAFPEERTVAGEV-ARLCAEMDVMRFCHQLDYATSGILVTAKSQEAAGKCAALFRKRTAEKTYTAVVFGHPE 354
            K FV  QP  L ++FQ++H   +  Y+ LNKPFD RL+ P G PG       F  + +    + AR   E   +RFCHQLD ATSG+L+ A +++AAG  A +FR+R  +K Y+AVVFG PE
Sbjct:   82 KEFVLRQPQCLERKFQIIHEDLKLGYVALNKPFDVRLDTPRGWPGKVRFTAKFDGDASCEDFLNARFPGEH--VRFCHQLDNATSGVLLCALTKKAAGVAAKMFRERRTKKFYSAVVFGWPE 201          
BLAST of mRNA_P-wetherbeei_contig11426.1.1 vs. uniprot
Match: C1MUR7_MICPC (Pseudouridine synthase n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MUR7_MICPC)

HSP 1 Score: 91.7 bits (226), Expect = 2.310e-19
Identity = 50/120 (41.67%), Postives = 68/120 (56.67%), Query Frame = 1
Query:   10 VTSQPGFLRQRFQVLHNSAQYIVLNKPFDTRLNFPGKPGSADGGPA------FPEERTVAGEVARLCAEMDVMRFCHQLDYATSGILVTAKSQEAAGKCAALFRKRTAEKTYTAVVFGHP 351
            +  QP  L +RF ++H    Y V+NKP+  RL+ P     A G P       +P + +V   +       D +RF HQLD ATSG+LV A ++ AAG+ A LFR+R A K Y A+VFGHP
Sbjct:  167 IARQPHSLERRFHLVHECEDYAVVNKPWCVRLDTPRGWKDAAGNPLNRFTPKYPGDLSVEDWLEERYPGWDTVRFVHQLDNATSGVLVAASNKRAAGRAAKLFRERAARKAYIALVFGHP 286          
BLAST of mRNA_P-wetherbeei_contig11426.1.1 vs. uniprot
Match: A0A8J5XAX4_DIALT (PseudoU_synth_2 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XAX4_DIALT)

HSP 1 Score: 89.0 bits (219), Expect = 9.020e-19
Identity = 50/114 (43.86%), Postives = 66/114 (57.89%), Query Frame = 1
Query:    7 FVTSQPGFLRQRFQVLHNSAQYIVLNKPFDTRLNFPGKPGSADGGPAFPEERTVAGEVARLCAEMDVMRFCHQLDYATSGILVTAKSQEAAGKCAALFRKRTAEKTYTAVVFGH 348
            FV  QP FLR  F V +  A +++++KPFD RL+         G   F  E T A  +A     +  +RFCHQLD ATSG+L+ AKS++AA     LF +R A K Y A+VFGH
Sbjct:   59 FVRRQPQFLRLEFGVPYEDASFVLISKPFDVRLDL-----GTSGERNFALEITAADFLA--ARGLGTLRFCHQLDAATSGLLLAAKSRKAASAACGLFERRQARKQYLALVFGH 165          
BLAST of mRNA_P-wetherbeei_contig11426.1.1 vs. uniprot
Match: A0A7S3S8B8_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3S8B8_EMIHU)

HSP 1 Score: 86.3 bits (212), Expect = 6.370e-18
Identity = 43/116 (37.07%), Postives = 60/116 (51.72%), Query Frame = 1
Query:    4 AFVTSQPGFLRQRFQVLHNSAQYIVLNKPFDTRLNFPGKPGSADGGPAFPEERTVAGEVARLCAEMDVMRFCHQLDYATSGILVTAKSQEAAGKCAALFRKRTAEKTYTAVVFGHP 351
            A ++ QP  L   F  +H   Q ++++KPF  R++ P +P  AD          + G    +       R CH LDYATSG++  AKS+ AA +   LF  R A K Y A+VFGHP
Sbjct:  114 ALISEQPELLELDFGAVHEDEQLLLVHKPFQVRMSAPSRPAGADSPDEPSLHEWLVGTHPSVMTAAGTTRVCHNLDYATSGVVACAKSEGAAREVGRLFEARKARKLYAALVFGHP 229          
BLAST of mRNA_P-wetherbeei_contig11426.1.1 vs. uniprot
Match: A0A7S3WAW1_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WAW1_EMIHU)

HSP 1 Score: 86.3 bits (212), Expect = 1.220e-17
Identity = 43/116 (37.07%), Postives = 60/116 (51.72%), Query Frame = 1
Query:    4 AFVTSQPGFLRQRFQVLHNSAQYIVLNKPFDTRLNFPGKPGSADGGPAFPEERTVAGEVARLCAEMDVMRFCHQLDYATSGILVTAKSQEAAGKCAALFRKRTAEKTYTAVVFGHP 351
            A ++ QP  L   F  +H   Q ++++KPF  R++ P +P  AD          + G    +       R CH LDYATSG++  AKS+ AA +   LF  R A K Y A+VFGHP
Sbjct:  114 ALISEQPELLELDFGAVHEDEQLLLVHKPFQVRMSAPSRPAGADSPDEPSLHEWLVGTHPSVMTAAGTTRVCHNLDYATSGVVACAKSEGAAREVGRLFEARKARKLYAALVFGHP 229          
BLAST of mRNA_P-wetherbeei_contig11426.1.1 vs. uniprot
Match: A0A7S0MYQ1_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MYQ1_9CHLO)

HSP 1 Score: 83.6 bits (205), Expect = 1.670e-16
Identity = 41/115 (35.65%), Postives = 67/115 (58.26%), Query Frame = 1
Query:    7 FVTSQPGFLRQRFQVLHNSAQYIVLNKPFDTRLNFPGKPGSADGGPAFPEERTVAGEVARLCAEMDVMRFCHQLDYATSGILVTAKSQEAAGKCAALFRKRTAEKTYTAVVFGHP 351
            ++T QP  L QRF+ +++  +Y+ + KP+ TR + P   G       +  + +    +     ++ + RFCHQ+D+AT G+L+ AK+Q AAG    LF  R+ +K Y A+VFGHP
Sbjct:  145 YITRQPSCLEQRFEEIYSDERYVAIRKPYYTRHDTPRGWGRPRYEKRYEGDTSAEEWLQERYPDVHI-RFCHQIDFATEGVLLAAKTQAAAGAVGKLFSSRSNKKQYLAIVFGHP 258          
BLAST of mRNA_P-wetherbeei_contig11426.1.1 vs. uniprot
Match: A0A0G4F5L5_9ALVE (PseudoU_synth_2 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4F5L5_9ALVE)

HSP 1 Score: 82.8 bits (203), Expect = 4.350e-16
Identity = 45/113 (39.82%), Postives = 70/113 (61.95%), Query Frame = 1
Query:   10 VTSQPGFLRQRFQVLHNSAQYIVLNKPFDTRLNFPGKPGSADGGPAFPEERTVAGEVARLCAEMDVMRFCHQLDYATSGILVTAKSQEAAGKCAALFRKRTAEKTYTAVVFGH 348
            V  +P +L ++FQ L  +   I +NKPFD R++ P K GS      +  E +VA      C E + +R CHQLD+ATSG+L+ A++++AAG+    F +R A+K Y+A++ GH
Sbjct:  284 VREEPLYLARKFQTLLKTKDLIAVNKPFDVRVDIP-KAGSHK----WSLEVSVADWFCDQCPECERVRLCHQLDHATSGVLILARNKKAAGQVQQTFEQRGAKKEYSALLRGH 391          
BLAST of mRNA_P-wetherbeei_contig11426.1.1 vs. uniprot
Match: A0A7S0KHX4_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KHX4_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 1.380e-14
Identity = 52/135 (38.52%), Postives = 69/135 (51.11%), Query Frame = 1
Query:    4 AFVTSQPGFLRQRFQVLHNSAQ--YIVLNKPFDTRLNFPGKPGSADGGPAFPEERTVAGEVARLCAEMDV----------------MRFCHQLDYATSGILVTAKSQEAAGKCAALFRKRTAEKTYTAVVFGHPE 354
            A    QPG L ++++ +   AQ  +I ++KPF  RL+ P       G     E+ T   E  R     D                  RFCHQLD ATSG+++TA ++EAAG  A LFR+R A+K Y AVVFG PE
Sbjct:  430 ACALRQPGVLERKYETVFECAQRGFIAVHKPFAVRLDTP------RGWSEKTEDGTGRVEKVRFVPRWDGDASCEDWLNIRFPDMHHRFCHQLDTATSGVVLTANTREAAGSAAKLFRERRAKKRYLAVVFGWPE 558          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11426.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0KV63_MICPS4.480e-2647.41Hypothetical protein n=2 Tax=Micromonas TaxID=3883... [more]
A0A0G4FEV8_VITBC1.350e-2041.23PseudoU_synth_2 domain-containing protein n=3 Tax=... [more]
K8EIZ1_9CHLO1.900e-1945.08Pseudouridine synthase n=1 Tax=Bathycoccus prasino... [more]
C1MUR7_MICPC2.310e-1941.67Pseudouridine synthase n=2 Tax=Micromonas pusilla ... [more]
A0A8J5XAX4_DIALT9.020e-1943.86PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A7S3S8B8_EMIHU6.370e-1837.07Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S3WAW1_EMIHU1.220e-1737.07Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S0MYQ1_9CHLO1.670e-1635.65Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A0G4F5L5_9ALVE4.350e-1639.82PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A7S0KHX4_9CHLO1.380e-1438.52Hypothetical protein n=2 Tax=Ostreococcus mediterr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11426contigP-wetherbeei_contig11426:1801..2154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog296587.XP_002502205.1
Preferred nameRPUSD1
PFAMsPseudoU_synth_2
Model size354
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000455,GO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016853,GO:0016866,GO:0022613,GO:0031118,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Exons1
Evalue2.2e-26
EggNOG OGsCOG0564@1|root,KOG1919@2759|Eukaryota
Descriptionpseudouridine synthase activity
Cds size354
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185911.2079682-CDS-P-wetherbeei_contig11426:1800..21541683185911.2079682-CDS-P-wetherbeei_contig11426:1800..2154Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11426 1801..2154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11426.1.1prot_P-wetherbeei_contig11426.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11426 1801..2154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11426.1.1

>prot_P-wetherbeei_contig11426.1.1 ID=prot_P-wetherbeei_contig11426.1.1|Name=mRNA_P-wetherbeei_contig11426.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
KAFVTSQPGFLRQRFQVLHNSAQYIVLNKPFDTRLNFPGKPGSADGGPAF
PEERTVAGEVARLCAEMDVMRFCHQLDYATSGILVTAKSQEAAGKCAALF
RKRTAEKTYTAVVFGHPE
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mRNA from alignment at P-wetherbeei_contig11426:1801..2154+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11426.1.1 ID=mRNA_P-wetherbeei_contig11426.1.1|Name=mRNA_P-wetherbeei_contig11426.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig11426:1801..2154+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGCTTTCGTGACGTCGCAGCCGGGTTTTCTTCGGCAGCGCTTTCAGGT TTTGCACAACAGCGCTCAGTACATTGTGCTCAACAAGCCTTTTGACACCC GTCTGAACTTTCCGGGCAAGCCCGGAAGCGCTGACGGCGGTCCCGCCTTT CCGGAGGAGCGAACCGTCGCGGGAGAGGTCGCGAGACTGTGTGCTGAAAT GGACGTGATGCGCTTTTGCCACCAGCTCGACTATGCGACGAGCGGAATCC TCGTCACAGCCAAGAGCCAAGAGGCGGCCGGAAAGTGCGCTGCGCTCTTT CGAAAGCGGACGGCGGAAAAGACATACACCGCCGTCGTCTTTGGACACCC CGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11426:1801..2154+

>mRNA_P-wetherbeei_contig11426.1.1 ID=mRNA_P-wetherbeei_contig11426.1.1|Name=mRNA_P-wetherbeei_contig11426.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig11426:1801..2154+ (Phaeothamnion wetherbeei SAG_119_79)
AAGGCTTTCGTGACGTCGCAGCCGGGTTTTCTTCGGCAGCGCTTTCAGGT
TTTGCACAACAGCGCTCAGTACATTGTGCTCAACAAGCCTTTTGACACCC
GTCTGAACTTTCCGGGCAAGCCCGGAAGCGCTGACGGCGGTCCCGCCTTT
CCGGAGGAGCGAACCGTCGCGGGAGAGGTCGCGAGACTGTGTGCTGAAAT
GGACGTGATGCGCTTTTGCCACCAGCTCGACTATGCGACGAGCGGAATCC
TCGTCACAGCCAAGAGCCAAGAGGCGGCCGGAAAGTGCGCTGCGCTCTTT
CGAAAGCGGACGGCGGAAAAGACATACACCGCCGTCGTCTTTGGACACCC
CGAG
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