mRNA_P-wetherbeei_contig11425.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11425.1.1
Unique NamemRNA_P-wetherbeei_contig11425.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11425.1.1 vs. uniprot
Match: A0A835Z857_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z857_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.890e-52
Identity = 107/160 (66.88%), Postives = 117/160 (73.12%), Query Frame = 1
Query:   13 MLQKRAQLPAFQMADDIIGQIERNQVVVVSGETGCGKTVSAAIVTTPHIHLSSVAWASATTATQVPQLVLDRLIEQGRGARANILVTQPRRISAIGVAERIAAERCERAGQTAGYQIRLESKRSRQTRLLLCTTGVLLRRLQIDPVLATVSHVFVDEVRQ 492
            M  KR QLPA+QMAD I+  I +NQVVV+SGETGCGKT                        TQVPQLVLD LI  G GA AN++VTQPRRISAIGVAERIA ERCER G  AGYQIRLESKRS +TRLLLCTTG+LLRRLQIDP L+TVSHVFVDEV +
Sbjct:  738 MQAKREQLPAYQMADGIVKAISQNQVVVISGETGCGKT------------------------TQVPQLVLDHLIATGVGACANMVVTQPRRISAIGVAERIAQERCERVGGMAGYQIRLESKRSNRTRLLLCTTGILLRRLQIDPWLSTVSHVFVDEVHE 873          
BLAST of mRNA_P-wetherbeei_contig11425.1.1 vs. uniprot
Match: A0A6H5L0U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0U7_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 1.000e-51
Identity = 103/163 (63.19%), Postives = 119/163 (73.01%), Query Frame = 1
Query:    4 YAAMLQKRAQLPAFQMADDIIGQIERNQVVVVSGETGCGKTVSAAIVTTPHIHLSSVAWASATTATQVPQLVLDRLIEQGRGARANILVTQPRRISAIGVAERIAAERCERAGQTAGYQIRLESKRSRQTRLLLCTTGVLLRRLQIDPVLATVSHVFVDEVRQ 492
            Y  ML KR++LPA++M D I+  +   QVVVVSGETGCGKT                        TQVPQLVLD +I +  GA ANI+VTQPRRISA+GVAERIAAER ER G+TAGYQIRLESKRS+ TRLLLCTTG+LLRRLQ+DP LA+VSHVFVDEV +
Sbjct:  191 YQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKT------------------------TQVPQLVLDTMIMEKEGASANIIVTQPRRISAVGVAERIAAERAERIGETAGYQIRLESKRSKATRLLLCTTGILLRRLQVDPWLASVSHVFVDEVHE 329          
BLAST of mRNA_P-wetherbeei_contig11425.1.1 vs. uniprot
Match: D7G1J2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J2_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 2.180e-51
Identity = 103/163 (63.19%), Postives = 119/163 (73.01%), Query Frame = 1
Query:    4 YAAMLQKRAQLPAFQMADDIIGQIERNQVVVVSGETGCGKTVSAAIVTTPHIHLSSVAWASATTATQVPQLVLDRLIEQGRGARANILVTQPRRISAIGVAERIAAERCERAGQTAGYQIRLESKRSRQTRLLLCTTGVLLRRLQIDPVLATVSHVFVDEVRQ 492
            Y  ML KR++LPA++M D I+  +   QVVVVSGETGCGKT                        TQVPQLVLD +I +  GA ANI+VTQPRRISA+GVAERIAAER ER G+TAGYQIRLESKRS+ TRLLLCTTG+LLRRLQ+DP LA+VSHVFVDEV +
Sbjct:  261 YQDMLAKRSKLPAYEMRDHIVRTVRNAQVVVVSGETGCGKT------------------------TQVPQLVLDTMIMEKEGASANIIVTQPRRISAVGVAERIAAERAERIGETAGYQIRLESKRSKATRLLLCTTGILLRRLQVDPWLASVSHVFVDEVHE 399          
BLAST of mRNA_P-wetherbeei_contig11425.1.1 vs. uniprot
Match: B8C1N5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1N5_THAPS)

HSP 1 Score: 180 bits (457), Expect = 6.750e-50
Identity = 98/160 (61.25%), Postives = 116/160 (72.50%), Query Frame = 1
Query:   13 MLQKRAQLPAFQMADDIIGQIERNQVVVVSGETGCGKTVSAAIVTTPHIHLSSVAWASATTATQVPQLVLDRLIEQGRGARANILVTQPRRISAIGVAERIAAERCERAGQTAGYQIRLESKRSRQTRLLLCTTGVLLRRLQIDPVLATVSHVFVDEVRQ 492
            ML +R +LPA++M D ++  I  NQV V+SG+TGCGKT                        TQVPQLVLD LI   RG+ AN++VTQPRRISAIGV+ERIAAERCER G+T GY IRLES+RS +TRLLLCTTGVLLRRLQ+DP LA+VSHVFVDEV +
Sbjct:    1 MLSQRIKLPAYKMKDKVLETIRANQVTVISGDTGCGKT------------------------TQVPQLVLDDLILSNRGSEANVIVTQPRRISAIGVSERIAAERCERIGETVGYSIRLESRRSAKTRLLLCTTGVLLRRLQVDPDLASVSHVFVDEVHE 136          
BLAST of mRNA_P-wetherbeei_contig11425.1.1 vs. uniprot
Match: A0A7S3QBY0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QBY0_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.240e-49
Identity = 99/160 (61.88%), Postives = 116/160 (72.50%), Query Frame = 1
Query:   13 MLQKRAQLPAFQMADDIIGQIERNQVVVVSGETGCGKTVSAAIVTTPHIHLSSVAWASATTATQVPQLVLDRLIEQGRGARANILVTQPRRISAIGVAERIAAERCERAGQTAGYQIRLESKRSRQTRLLLCTTGVLLRRLQIDPVLATVSHVFVDEVRQ 492
            ML +R +LPAFQM + I+  I  NQ+ VVSG+TGCGKT                        TQVPQLVLD +I Q RG+ ANI+VTQPRRISAIGV+ERIA+ERCER G+T GY IRLE+KRS +TRLLLCTTG+LLRRLQ DP LA+VSHVFVDEV +
Sbjct:  722 MLSQRQRLPAFQMEEKIVRTIGSNQISVVSGDTGCGKT------------------------TQVPQLVLDDMIRQNRGSEANIIVTQPRRISAIGVSERIASERCERVGETVGYSIRLENKRSAKTRLLLCTTGILLRRLQCDPDLASVSHVFVDEVHE 857          
BLAST of mRNA_P-wetherbeei_contig11425.1.1 vs. uniprot
Match: A0A7S2YMV8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YMV8_9STRA)

HSP 1 Score: 166 bits (420), Expect = 6.390e-46
Identity = 95/152 (62.50%), Postives = 103/152 (67.76%), Query Frame = 1
Query:   37 PAFQMADDIIGQIERNQVVVVSGETGCGKTVSAAIVTTPHIHLSSVAWASATTATQVPQLVLDRLIEQGRGARANILVTQPRRISAIGVAERIAAERCERAGQTAGYQIRLESKRSRQTRLLLCTTGVLLRRLQIDPVLATVSHVFVDEVRQ 492
            PAF M D+I   I+ NQVVV+SG TG GKT                        TQVPQ VLD LI   RGA ANILVTQPRRISAIGVAER+AAERCE+ GQT GY I+LE K S+ TRLLLCTTGVLLRRL  DP LA +SHVFVDEV Q
Sbjct:    1 PAFGMKDNISETIQNNQVVVISGATGSGKT------------------------TQVPQFVLDELISGNRGAHANILVTQPRRISAIGVAERMAAERCEKCGQTVGYSIKLEKKMSKHTRLLLCTTGVLLRRLMGDPDLAAISHVFVDEVHQ 128          
BLAST of mRNA_P-wetherbeei_contig11425.1.1 vs. uniprot
Match: A0A7S1HKN7_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HKN7_HEMAN)

HSP 1 Score: 157 bits (397), Expect = 1.700e-44
Identity = 85/160 (53.12%), Postives = 109/160 (68.12%), Query Frame = 1
Query:   13 MLQKRAQLPAFQMADDIIGQIERNQVVVVSGETGCGKTVSAAIVTTPHIHLSSVAWASATTATQVPQLVLDRLIEQGRGARANILVTQPRRISAIGVAERIAAERCERAGQTAGYQIRLESKRSRQTRLLLCTTGVLLRRLQIDPVLATVSHVFVDEVRQ 492
            M + R +LPA+QMA +I+  I+ +QVVV+SG+TGCGKT                        TQ+PQLVLD+ +  GRG    ++ TQPRRISA+ VA+R+AAER E  GQT GYQIRLE+KRS QT+LL CTTGVLLRRLQ D +L  V+H+FVDE+ +
Sbjct:   74 MQKVRQKLPAYQMAGEILHAIDNHQVVVISGDTGCGKT------------------------TQLPQLVLDQYVRNGRGGEVEMICTQPRRISAMSVADRVAAERAEATGQTVGYQIRLEAKRSAQTKLLFCTTGVLLRRLQGDCLLKGVTHIFVDEIHE 209          
BLAST of mRNA_P-wetherbeei_contig11425.1.1 vs. uniprot
Match: A0A7S4JSU1_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4JSU1_GUITH)

HSP 1 Score: 157 bits (396), Expect = 2.860e-44
Identity = 85/160 (53.12%), Postives = 107/160 (66.88%), Query Frame = 1
Query:   13 MLQKRAQLPAFQMADDIIGQIERNQVVVVSGETGCGKTVSAAIVTTPHIHLSSVAWASATTATQVPQLVLDRLIEQGRGARANILVTQPRRISAIGVAERIAAERCERAGQTAGYQIRLESKRSRQTRLLLCTTGVLLRRLQIDPVLATVSHVFVDEVRQ 492
            M++ R +LP+F M ++++  I  ++VVVVSGETGCGKT                        TQVPQ +LD +  QG G++ NI+ TQPRRISAI VA+R+A ERCE  G T GYQIRLE KRS +TRLL CTTGVLLRRL +DP L+ VSHV VDE+ +
Sbjct:   93 MMEGRKRLPSFSMREEVLSVIRSSRVVVVSGETGCGKT------------------------TQVPQFILDDMDAQGLGSQCNIICTQPRRISAISVADRVANERCETLGDTVGYQIRLEVKRSERTRLLFCTTGVLLRRLVVDPELSGVSHVIVDEIHE 228          
BLAST of mRNA_P-wetherbeei_contig11425.1.1 vs. uniprot
Match: A0A1E7EIR8_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EIR8_9STRA)

HSP 1 Score: 165 bits (417), Expect = 3.430e-44
Identity = 89/156 (57.05%), Postives = 108/156 (69.23%), Query Frame = 1
Query:   25 RAQLPAFQMADDIIGQIERNQVVVVSGETGCGKTVSAAIVTTPHIHLSSVAWASATTATQVPQLVLDRLIEQGRGARANILVTQPRRISAIGVAERIAAERCERAGQTAGYQIRLESKRSRQTRLLLCTTGVLLRRLQIDPVLATVSHVFVDEVRQ 492
            R +LPA QMA +++  I++NQ+ V++G TGCGKT                        TQVPQLVLD LI +G GA  NI++TQPRRISAIGVA RI+ ERCE+ G T GY I+LE K S +TRLLLCTTGVLLRRLQ DP LA+VSH+FVDEV +
Sbjct:    4 RQRLPASQMAHEVVETIDKNQITVIAGATGCGKT------------------------TQVPQLVLDDLIARGLGAATNIIITQPRRISAIGVAGRISEERCEKVGDTCGYSIKLEKKMSNKTRLLLCTTGVLLRRLQCDPDLASVSHIFVDEVHE 135          
BLAST of mRNA_P-wetherbeei_contig11425.1.1 vs. uniprot
Match: K0SPX4_THAOC (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SPX4_THAOC)

HSP 1 Score: 163 bits (413), Expect = 5.820e-44
Identity = 95/163 (58.28%), Postives = 116/163 (71.17%), Query Frame = 1
Query:    4 YAAMLQKRAQLPAFQMADDIIGQIERNQVVVVSGETGCGKTVSAAIVTTPHIHLSSVAWASATTATQVPQLVLDRLIEQGRGARANILVTQPRRISAIGVAERIAAERCERAGQTAGYQIRLESKRSRQTRLLLCTTGVLLRRLQIDPVLATVSHVFVDEVRQ 492
            +  ML +R +LPAF+M D ++  I+RNQV VVSG+TGCGK VS    T+     S+V W              + +I +  G+ ANILVTQPRRISAIGV+ERIA+ERCE+ G T GY IRL+SKRS +TRLLLCTTGVLLRRLQ DP LA+VSHVFVDEV +
Sbjct:  357 FKTMLNQRTKLPAFKMKDKLLATIDRNQVTVVSGDTGCGK-VSVRHTTSG----SAVKWVFFNLTVDSALDHANDMILRNIGSEANILVTQPRRISAIGVSERIASERCEKLGHTCGYSIRLDSKRSDKTRLLLCTTGVLLRRLQCDPDLASVSHVFVDEVHE 514          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11425.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z857_9STRA1.890e-5266.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L0U7_9PHAE1.000e-5163.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1J2_ECTSI2.180e-5163.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B8C1N5_THAPS6.750e-5061.25Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S3QBY0_9STRA1.240e-4961.88Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2YMV8_9STRA6.390e-4662.50Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S1HKN7_HEMAN1.700e-4453.13Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S4JSU1_GUITH2.860e-4453.13Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A1E7EIR8_9STRA3.430e-4457.05p-loop containing nucleoside triphosphate hydrolas... [more]
K0SPX4_THAOC5.820e-4458.28Helicase ATP-binding domain-containing protein (Fr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11425contigP-wetherbeei_contig11425:1258..2036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G1J2
PFAMsDEAD,HA2,Helicase_C,OB_NTP_bind
Model size492
Max annot lvl2759|Eukaryota
KEGG koko:K13026
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.77e-52
EggNOG OGsCOG1643@1|root,KOG0920@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
Cds size480
COG categoryL
BRITEko00000,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185911.1451006-UTR-P-wetherbeei_contig11425:1257..12691683185911.1451006-UTR-P-wetherbeei_contig11425:1257..1269Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11425 1258..1269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185911.1630175-CDS-P-wetherbeei_contig11425:1269..14021683185911.1630175-CDS-P-wetherbeei_contig11425:1269..1402Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11425 1270..1402 +
1683185911.1748545-CDS-P-wetherbeei_contig11425:1592..16451683185911.1748545-CDS-P-wetherbeei_contig11425:1592..1645Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11425 1593..1645 +
1683185911.1826112-CDS-P-wetherbeei_contig11425:1742..20361683185911.1826112-CDS-P-wetherbeei_contig11425:1742..2036Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11425 1743..2036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11425.1.1prot_P-wetherbeei_contig11425.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11425 1270..2036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11425.1.1

>prot_P-wetherbeei_contig11425.1.1 ID=prot_P-wetherbeei_contig11425.1.1|Name=mRNA_P-wetherbeei_contig11425.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
MLQKRAQLPAFQMADDIIGQIERNQVVVVSGETGCGKTVSAAIVTTPHIH
LSSVAWASATTATQVPQLVLDRLIEQGRGARANILVTQPRRISAIGVAER
IAAERCERAGQTAGYQIRLESKRSRQTRLLLCTTGVLLRRLQIDPVLATV
SHVFVDEVRQ
back to top

mRNA from alignment at P-wetherbeei_contig11425:1258..2036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11425.1.1 ID=mRNA_P-wetherbeei_contig11425.1.1|Name=mRNA_P-wetherbeei_contig11425.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=779bp|location=Sequence derived from alignment at P-wetherbeei_contig11425:1258..2036+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTACGCCGCCATGCTGCAGAAGCGGGCGCAGCTGCCGGCGTTCCAGAT GGCGGACGATATTATCGGACAGATCGAGCGGAACCAGGTGGTGGTGGTCA GCGGCGAGACGGGCTGCGGCAAGACGGTGAGCGCTGCAATAGTTAGTGCC GAATGATCTGCGTTGGATTTTCGGTTGTTTGTGTGCCTTCTTCTGTGCGC AAAATAGCCATCATAACGTATGCTGCGGCGGCCGTGGACACTTTTTGGTT TTGCTCTTCTTATTGTGGAGTTTCCCAGTACGCCAAAACGCGAACGCCTC TGGTGCCATCGCGATATTGTTGCCACTCACTCGAGCAACTCCGCACATCC ATTTGTCGTCGGTTGCCTGGGCATCTGCCACTACTGCCGTCCACCGTCCA TTCTCACCGGAACCGCCCGAACCGCCCGAAACTCCTCTGCGACACCCGAC CCGAACCGCTGTTTCCCGGCCCCATCTGCTGACAGACACAAGTGCCGCAG CTGGTGCTGGACCGCCTCATCGAGCAGGGCCGCGGCGCGCGCGCCAACAT CCTCGTGACGCAGCCGCGTCGCATCAGTGCCATCGGCGTCGCCGAACGGA TCGCCGCCGAGCGCTGCGAGCGGGCGGGGCAGACGGCTGGCTACCAGATC CGGCTGGAGTCGAAGCGGTCCCGGCAGACGCGGCTGCTTCTGTGCACGAC GGGCGTGCTGCTGCGACGGCTGCAGATAGACCCTGTGCTGGCCACCGTCA GCCACGTCTTTGTAGACGAGGTGCGTCAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11425:1258..2036+

>mRNA_P-wetherbeei_contig11425.1.1 ID=mRNA_P-wetherbeei_contig11425.1.1|Name=mRNA_P-wetherbeei_contig11425.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig11425:1258..2036+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCAGAAGCGGGCGCAGCTGCCGGCGTTCCAGATGGCGGACGATAT
TATCGGACAGATCGAGCGGAACCAGGTGGTGGTGGTCAGCGGCGAGACGG
GCTGCGGCAAGACGGTGAGCGCTGCAATAGTTACAACTCCGCACATCCAT
TTGTCGTCGGTTGCCTGGGCATCTGCCACTACTGCCACACAAGTGCCGCA
GCTGGTGCTGGACCGCCTCATCGAGCAGGGCCGCGGCGCGCGCGCCAACA
TCCTCGTGACGCAGCCGCGTCGCATCAGTGCCATCGGCGTCGCCGAACGG
ATCGCCGCCGAGCGCTGCGAGCGGGCGGGGCAGACGGCTGGCTACCAGAT
CCGGCTGGAGTCGAAGCGGTCCCGGCAGACGCGGCTGCTTCTGTGCACGA
CGGGCGTGCTGCTGCGACGGCTGCAGATAGACCCTGTGCTGGCCACCGTC
AGCCACGTCTTTGTAGACGAGGTGCGTCAA
back to top