mRNA_P-wetherbeei_contig11422.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11422.1.1
Unique NamemRNA_P-wetherbeei_contig11422.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11422.1.1 vs. uniprot
Match: A0A7S3USL8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USL8_HETAK)

HSP 1 Score: 105 bits (262), Expect = 1.550e-25
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:    2 GELSLLYQAPRSASVLAIGDCVLWALSRDVFREVQALSSASCLMRRIQWLAAVEGLQPLDRLDVSKLAGAPKTEHFRAGDALLQANATTDRCYMVERGFV 301
            GEL+LLY APRSASV A   CV+W+L+R+ FREVQAL+S+  L++R+ WL  V  L+ LD+LD+ KLA + +T   R G+ L+     TDRC+++E G V
Sbjct:   33 GELALLYNAPRSASVRAAEPCVVWSLARETFREVQALASSVQLLQRVAWLLDVPTLRRLDKLDLCKLASSLRTAPLRHGEVLVTEGQATDRCFLLENGVV 132          
BLAST of mRNA_P-wetherbeei_contig11422.1.1 vs. uniprot
Match: A0A7S2UWP0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWP0_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 5.140e-23
Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 2
Query:    2 GELSLLYQAPRSASVLAIGDCVLWALSRDVFREVQALSSASCLMRRIQWLAAVEGLQPLDRLDVSKLAGAPKTEHFRAGDALLQANATTDRCYMVERGFV 301
            GEL+LL+ APRSASV A   CVLW+L R+ FREVQAL+S++ L++R+ WL     LQ LD++D+ KLA + +T   R G+ ++     TDR  +VE G V
Sbjct:   57 GELALLFNAPRSASVKAQAPCVLWSLKRETFREVQALASSAQLVQRVAWLLQAPSLQGLDKVDLCKLASSLRTIPMRNGEIIINEGQRTDRLVLVESGVV 156          
BLAST of mRNA_P-wetherbeei_contig11422.1.1 vs. uniprot
Match: D7FJ47_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ47_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.350e-19
Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:    2 GELSLLYQAPRSASVLAIGDCVLWALSRDVFREVQALSSASCLMRRIQWLAAVEGLQPLDRLDVSKLAGAPKTEHFRAGDALLQANATTDRCYMVERGFV 301
            GEL+LLY APRSA+V  +  CVLW++ R+VF+ VQAL+++  L+ R   L  V  L+ L   D+SKLA   +T  +R GD +L+    TDRC+++E G V
Sbjct:  264 GELALLYNAPRSATVRTLTRCVLWSIHREVFKAVQALTASMSLIARSTHLYHVPWLRLLSTADLSKLAACCQTAQYRDGDVILRKGEETDRCFLIESGEV 363          
BLAST of mRNA_P-wetherbeei_contig11422.1.1 vs. uniprot
Match: A0A482RXL7_9ARCH (Cyclic nucleotide-binding domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RXL7_9ARCH)

HSP 1 Score: 86.3 bits (212), Expect = 6.920e-18
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = 2
Query:    2 GELSLLYQAPRSASVLAIGDCVLWALSRDVFREVQALSSASCLMRRIQWLAAVEGLQPLDRLDVSKLAGAPKTEHFRAGDALLQANATTDRCYMVERG 295
            GEL+LLY APRSA+V     CVLW+LSR++F+ VQA+S+ +  ++R +WL A   L  L  +D+S+L    +  HF  GD ++     T +  ++E+G
Sbjct:  149 GELALLYDAPRSATVQCRTKCVLWSLSREIFKRVQAISATANQIQRARWLIASPELATLSAIDLSRLVATLQVVHFNPGDKMISEKDLTTQIILIEKG 246          
BLAST of mRNA_P-wetherbeei_contig11422.1.1 vs. uniprot
Match: A0A7S0SWA7_9STRA (cGMP-dependent protein kinase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWA7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.340e-16
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = 2
Query:    2 GELSLLYQAPRSASVLAIGDCVLWALSRDVFREVQALSSASCLMRRIQWLAAVEGLQPLDRLDVSKLAGAPKTEHFRAGDALLQANATTDRCYMVERG 295
            GEL+LLY APRSA+V  I DCVLW L RD+F+ +QA+SS +  + R + L     L  L  +D+S+L G+ +  H  + + +   N+ T++  ++ERG
Sbjct:  150 GELALLYDAPRSATVKCITDCVLWTLRRDIFKRIQAISSTTHELERSRGLINSPDLAVLSAIDLSRLVGSLQPRHNFSNEKIYTENSLTNQILLIERG 247          
BLAST of mRNA_P-wetherbeei_contig11422.1.1 vs. uniprot
Match: A0A3R7J0Y3_9STRA (cGMP-dependent protein kinase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J0Y3_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.200e-16
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:    2 GELSLLYQAPRSASVLAIGDCVLWALSRDVFREVQALSSASCLMRRIQWLAAVEGLQPLDRLDVSKLAGAPKTEHFRAGDALLQANATTDRCYMVERGFV 301
            GEL+L+Y APR+A+V A  + +LW L RD FR VQA SS+  L++R +WL  VE L  L    ++ LAG  K  +F   + ++Q     D  Y+VE G V
Sbjct:  162 GELALIYDAPRAATVRAATNSILWTLDRDEFRMVQARSSSDSLVKRAKWLRQVEILASLSERQLALLAGVLKAANFTNNEMIIQQGDVGDTFYIVEEGNV 261          
BLAST of mRNA_P-wetherbeei_contig11422.1.1 vs. uniprot
Match: K3X6P7_GLOUD (cGMP-dependent protein kinase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X6P7_GLOUD)

HSP 1 Score: 82.0 bits (201), Expect = 3.670e-16
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:    2 GELSLLYQAPRSASVLAIGDCVLWALSRDVFREVQALSSASCLMRRIQWLAAVEGLQPLDRLDVSKLAGAPKTEHFRAGDALLQANATTDRCYMVERGFV 301
            GEL+L+Y APR+A+V A  + VLW L RD FR +QA SS+  L++R +WL  VE L  L    ++ LAG  +   F+ G+ +++     D  Y+VE G V
Sbjct:   49 GELALIYDAPRAATVRAAANSVLWTLDRDEFRMIQARSSSDSLVKRAKWLRQVEILGSLSERQLALLAGVLQAVTFQDGETIIRQGDVGDTFYIVEEGTV 148          
BLAST of mRNA_P-wetherbeei_contig11422.1.1 vs. uniprot
Match: A0A8K1FK60_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FK60_PYTOL)

HSP 1 Score: 80.5 bits (197), Expect = 1.520e-15
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:    2 GELSLLYQAPRSASVLAIGDCVLWALSRDVFREVQALSSASCLMRRIQWLAAVEGLQPLDRLDVSKLAGAPKTEHFRAGDALLQANATTDRCYMVERGFV 301
            GEL+L+Y APR+A+V A+ D V+W L RD FR +QA SS   L++R +WL  VE L  L    ++ LAG      F   + +++     D  Y+VE G V
Sbjct:  194 GELALIYDAPRAATVRALSDAVIWTLDRDEFRMIQARSSNDSLVKRAKWLRQVEILASLSERQLALLAGVLSAVTFENNETIIRQGDVGDTFYIVEEGNV 293          
BLAST of mRNA_P-wetherbeei_contig11422.1.1 vs. uniprot
Match: A0A7J6T234_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6T234_PEROL)

HSP 1 Score: 77.4 bits (189), Expect = 2.060e-15
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = 2
Query:    2 GELSLLYQAPRSASVLAIGDCVLWALSRDVFREVQALSSASCLMRRIQWLAAVEGLQPLDRLDVSKLAGAPKTEHFRAGDALLQANATTDRCYMVERG 295
            GELSLLY  PR+ASV A   C LW L R+ F  +   S++   +R   +L +V    PLD  ++S++A A KTE F AG  ++Q     D+ Y++E G
Sbjct:   37 GELSLLYNTPRAASVEATEPCTLWRLDRETFNHIVKESASRKRVRYETFLRSVPIFNPLDAYELSQVADALKTESFTAGQTIVQQGEPGDQFYLIENG 134          
BLAST of mRNA_P-wetherbeei_contig11422.1.1 vs. uniprot
Match: A0A485L4N6_9STRA (cGMP-dependent protein kinase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L4N6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.880e-15
Identity = 42/100 (42.00%), Postives = 56/100 (56.00%), Query Frame = 2
Query:    2 GELSLLYQAPRSASVLAIGDCVLWALSRDVFREVQALSSASCLMRRIQWLAAVEGLQPLDRLDVSKLAGAPKTEHFRAGDALLQANATTDRCYMVERGFV 301
            GEL+L+Y APR+A+V A  DCVLW L R+ FR +QA SS   L +R  WL  V     L    +S +  A +   F  GD ++Q  A  D  Y+V +G V
Sbjct:  194 GELALIYDAPRAATVRATSDCVLWTLGRNEFRTIQAQSSEDSLAKRSHWLRNVSLFSTLSARQLSLINRALEVVKFEDGDKIVQQGALGDAFYIVAQGTV 293          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11422.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3USL8_HETAK1.550e-2551.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2UWP0_9STRA5.140e-2349.00Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D7FJ47_ECTSI1.350e-1946.00cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A482RXL7_9ARCH6.920e-1840.82Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S0SWA7_9STRA2.340e-1640.82cGMP-dependent protein kinase n=1 Tax=Chromulina n... [more]
A0A3R7J0Y3_9STRA3.200e-1643.00cGMP-dependent protein kinase n=3 Tax=Phytophthora... [more]
K3X6P7_GLOUD3.670e-1642.00cGMP-dependent protein kinase n=1 Tax=Globisporang... [more]
A0A8K1FK60_PYTOL1.520e-1541.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7J6T234_PEROL2.060e-1540.82Uncharacterized protein n=1 Tax=Perkinsus olseni T... [more]
A0A485L4N6_9STRA3.880e-1542.00cGMP-dependent protein kinase n=1 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11422contigP-wetherbeei_contig11422:886..1456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size305
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185911.1051946-CDS-P-wetherbeei_contig11422:885..9911683185911.1051946-CDS-P-wetherbeei_contig11422:885..991Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11422 886..991 +
1683185911.1133885-CDS-P-wetherbeei_contig11422:1257..14541683185911.1133885-CDS-P-wetherbeei_contig11422:1257..1454Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11422 1258..1454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11422.1.1prot_P-wetherbeei_contig11422.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11422 886..1454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11422.1.1

>prot_P-wetherbeei_contig11422.1.1 ID=prot_P-wetherbeei_contig11422.1.1|Name=mRNA_P-wetherbeei_contig11422.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
RRAVAAVPGTAQCQCPGHRRLRAVGPKPRCLPRSPGAELGVVSDAAHPMA
GGRGRTAASGPPRRFQARWRPQNGTFPRRGRAPASQCHHRPLLHGRTRLR
S
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mRNA from alignment at P-wetherbeei_contig11422:886..1456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11422.1.1 ID=mRNA_P-wetherbeei_contig11422.1.1|Name=mRNA_P-wetherbeei_contig11422.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=571bp|location=Sequence derived from alignment at P-wetherbeei_contig11422:886..1456+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCGAGCTGTCGCTGCTGTACCAGGCACCGCGCAGTGCCAGTGTCCTGG CCATCGGCGACTGCGTGCTGTGGGCCCTAAGCCGCGATGTCTTCCGAGAA GTCCAGGTACGTGGTGCCGAATCGTTCCTTTTCGGTGTTTCCGGGGTTTG GGGGATTTGGGGAAGGCCTTGAAGCGGCTTCCCCCAGATTTCTAGATGGA GTGCGTTAAACCCATGCAGTCAGATAGCGCGTCTCTTCTTTCTGGTGCGA ATACGGCGGCATTTGCCCGCATATAGGGCCGACTTGAACAGTTCTGCACC ATCTGTTTCCTTGACAACGAGCTGCCGTCTCTTCCGACGATTCCTCCCTC CTCACGCACATCTGCCCGACAGGCGCTGAGCTCGGCGTCGTGTCTGATGC GGCGCATCCAATGGCTGGCGGCCGTGGAAGGACTGCAGCCTCTGGACCGC CTCGACGTTTCCAAGCTCGCTGGCGCCCCCAAAACGGAACATTTCCGCGC CGGGGACGCGCTCCTGCAAGCCAATGCCACCACCGACCGCTGCTACATGG TCGAACGCGGCTTCGTTCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11422:886..1456+

>mRNA_P-wetherbeei_contig11422.1.1 ID=mRNA_P-wetherbeei_contig11422.1.1|Name=mRNA_P-wetherbeei_contig11422.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig11422:886..1456+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCGAGCTGTCGCTGCTGTACCAGGCACCGCGCAGTGCCAGTGTCCTGG
CCATCGGCGACTGCGTGCTGTGGGCCCTAAGCCGCGATGTCTTCCGAGAA
GTCCAGGCGCTGAGCTCGGCGTCGTGTCTGATGCGGCGCATCCAATGGCT
GGCGGCCGTGGAAGGACTGCAGCCTCTGGACCGCCTCGACGTTTCCAAGC
TCGCTGGCGCCCCCAAAACGGAACATTTCCGCGCCGGGGACGCGCTCCTG
CAAGCCAATGCCACCACCGACCGCTGCTACATGGTCGAACGCGGCTTCGT
TCG
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