mRNA_P-wetherbeei_contig1142.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1142.1.1
Unique NamemRNA_P-wetherbeei_contig1142.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1142.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1142contigP-wetherbeei_contig1142:1974..4076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2103
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionCyclin-like
Ec32 orthologEc-07_005740.1
Cds size1311
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185910.9417994-UTR-P-wetherbeei_contig1142:1973..25521683185910.9417994-UTR-P-wetherbeei_contig1142:1973..2552Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1142 1974..2552 -
1683185910.957234-UTR-P-wetherbeei_contig1142:3863..40761683185910.957234-UTR-P-wetherbeei_contig1142:3863..4076Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1142 3864..4076 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185910.950001-CDS-P-wetherbeei_contig1142:2552..38631683185910.950001-CDS-P-wetherbeei_contig1142:2552..3863Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1142 2553..3863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1142.1.1prot_P-wetherbeei_contig1142.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1142 2553..3863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1142.1.1

>prot_P-wetherbeei_contig1142.1.1 ID=prot_P-wetherbeei_contig1142.1.1|Name=mRNA_P-wetherbeei_contig1142.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=437bp
MQPLDVDGMDMTHESELESLDLGAIASSSCQPRGGELRIASCGHARAARQ
EHSGQPRSEADACLRRQVARMDLYTRDTASFPKTWGQGGVRLRDLLADRA
GVIDWLDSCAQRYRWADSTVALALSSWDRYLVATYERHAAGSATRSAAAG
PNNKMLILAAYVAALIASKVEEPEEAALDMNKLAAVVQADPVTGLPPFSA
RDVRAMELSMLRELRFGTNPPLAHDLAVLAAALLPGATAADSAGVFISAG
SSAGGYGGGGAGGLADVTAAAAAGYLLDMRYELVWLRHDALTLAAAAVAC
ALVGSRRTHAIKPMLADVEAAAGRSLHLGAVVECAATMLGPCAASLILQG
GRSSPTGVDGIEHIERDLWADPTPPEGAAAAASGGAGPGSCDESSAKRPL
ATTGGAFEAQASNGTKRFRAFRASAAPAPITAAAAK*
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mRNA from alignment at P-wetherbeei_contig1142:1974..4076-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1142.1.1 ID=mRNA_P-wetherbeei_contig1142.1.1|Name=mRNA_P-wetherbeei_contig1142.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2103bp|location=Sequence derived from alignment at P-wetherbeei_contig1142:1974..4076- (Phaeothamnion wetherbeei SAG_119_79)
GTCGGCTGTAAATTGAGCTGCATCATTTCCCCGTCTGCCAAAGCGTACAA
GAGATCGACACGCGGCAGCGGCTTTCTCCGTCGAGTACGCCTCGCCGGGC
AGTTCCAGCGTCCTGTTCGCATGGTTTCCATCAAAAAGGATCTCACCCGT
CAATTTTGAGAGATCCGTGCGTAGTACCTGAGAGTTTTGGCGGATCTCCT
TCGCGCAAGCATCATGCAGCCTCTGGACGTCGATGGCATGGATATGACCC
ACGAATCCGAGCTAGAGTCGCTGGATCTCGGAGCCATAGCCAGTTCCTCC
TGCCAGCCTCGCGGAGGGGAACTACGCATTGCTTCCTGCGGGCACGCGCG
GGCGGCGCGCCAGGAGCACAGCGGCCAACCACGTTCCGAAGCTGACGCGT
GCTTGCGCAGGCAGGTGGCGCGGATGGATCTTTACACCCGCGATACGGCG
TCGTTCCCCAAGACGTGGGGGCAGGGAGGAGTGCGGCTCCGTGACCTCCT
CGCCGACCGCGCCGGCGTTATCGATTGGTTGGACAGCTGCGCGCAGCGCT
ACCGGTGGGCGGACAGCACCGTCGCGCTGGCGCTCTCCTCCTGGGATCGC
TACCTCGTCGCCACCTATGAGCGCCATGCCGCCGGATCTGCAACCAGATC
CGCCGCTGCGGGTCCCAACAACAAGATGCTGATCTTGGCGGCGTACGTTG
CGGCGCTGATTGCCAGCAAAGTGGAGGAGCCGGAGGAGGCAGCTCTCGAC
ATGAACAAGCTGGCCGCGGTGGTGCAGGCCGACCCGGTGACGGGGCTGCC
GCCCTTCTCCGCCCGCGACGTCCGCGCCATGGAGCTCTCCATGCTTCGGG
AGCTGCGCTTCGGCACCAACCCGCCGCTCGCGCACGACCTTGCCGTCCTC
GCCGCCGCCCTCCTACCTGGCGCCACCGCCGCCGACAGCGCCGGCGTTTT
TATCTCTGCCGGCAGCAGCGCTGGCGGTTACGGCGGCGGCGGCGCCGGCG
GCCTCGCCGACGTTACCGCCGCGGCCGCTGCGGGTTACCTGCTAGACATG
CGCTACGAGCTAGTGTGGCTGCGACACGACGCGCTGACGCTTGCGGCGGC
CGCCGTCGCCTGCGCGCTGGTCGGCTCCCGCCGTACGCATGCCATCAAGC
CCATGCTGGCCGATGTGGAGGCCGCCGCCGGGCGGTCGTTGCACCTGGGC
GCCGTGGTGGAGTGCGCGGCGACGATGCTGGGGCCGTGCGCAGCGTCACT
TATCCTGCAGGGCGGTCGGAGCAGTCCGACGGGCGTCGACGGCATCGAGC
ATATCGAGCGCGATCTTTGGGCCGACCCGACGCCGCCGGAAGGCGCCGCC
GCTGCCGCAAGTGGTGGCGCTGGCCCCGGCAGCTGCGACGAGTCGTCGGC
GAAGCGTCCGCTCGCCACCACGGGGGGCGCATTCGAGGCGCAGGCGTCCA
ACGGCACCAAACGCTTCCGTGCTTTCCGGGCCTCCGCCGCCCCTGCCCCC
ATCACCGCCGCCGCCGCCAAGTAGCCCGACGGCCGGCGTCGACAGCGGCA
TTGGCGGCAGCTAGAACAGCGACAAGATGCTGGCGAGGGGTGTGATACGG
GCCTAGGTGCGGGCTTCGGTCACACGTCAGGCGTCTTTCCCAGGGCAGGG
AAAGTCGCCGTTTTGGTTGAGAGAACGAGGGCGCCGATTTTGCAAGATTC
CATTTACGTTCTCGGAACGCGAGATGTCCCCCGGAAAAGGGGGAGAAGGT
GTGGGAATCCCGGCCAGGTATCCACCCTCTCTCTCCCCCATTCCGAACGT
CATAAAATTCCGTTTGTTTAGATGCGGCGCCTGCGTACCTACACATGCGT
GTAACAATGCAGCGCCCGAGCCGTTCCCGAAGGCGCGGACAGCGGCGGCG
GCGGCTGTGTCGCTCCGCCGTCCGCTTGCGCCCCCGGGCTGGCCGCCGGT
TGCATCCCGTGAGACGGCTGGTTGAGGCTGCAGCATAGCTATGCTGGTAT
GCTATGCCCCGTCGGAAAAAAAATGTCCTGCGCCCCGGCGCGAAAAAAAG
AAACGGCACTAGGGCCATCACTCCCTAGTGCACTAGAAAAGGAGGAAGGA
ACT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1142:1974..4076-

>mRNA_P-wetherbeei_contig1142.1.1 ID=mRNA_P-wetherbeei_contig1142.1.1|Name=mRNA_P-wetherbeei_contig1142.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1311bp|location=Sequence derived from alignment at P-wetherbeei_contig1142:1974..4076- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCCTCTGGACGTCGATGGCATGGATATGACCCACGAATCCGAGCT
AGAGTCGCTGGATCTCGGAGCCATAGCCAGTTCCTCCTGCCAGCCTCGCG
GAGGGGAACTACGCATTGCTTCCTGCGGGCACGCGCGGGCGGCGCGCCAG
GAGCACAGCGGCCAACCACGTTCCGAAGCTGACGCGTGCTTGCGCAGGCA
GGTGGCGCGGATGGATCTTTACACCCGCGATACGGCGTCGTTCCCCAAGA
CGTGGGGGCAGGGAGGAGTGCGGCTCCGTGACCTCCTCGCCGACCGCGCC
GGCGTTATCGATTGGTTGGACAGCTGCGCGCAGCGCTACCGGTGGGCGGA
CAGCACCGTCGCGCTGGCGCTCTCCTCCTGGGATCGCTACCTCGTCGCCA
CCTATGAGCGCCATGCCGCCGGATCTGCAACCAGATCCGCCGCTGCGGGT
CCCAACAACAAGATGCTGATCTTGGCGGCGTACGTTGCGGCGCTGATTGC
CAGCAAAGTGGAGGAGCCGGAGGAGGCAGCTCTCGACATGAACAAGCTGG
CCGCGGTGGTGCAGGCCGACCCGGTGACGGGGCTGCCGCCCTTCTCCGCC
CGCGACGTCCGCGCCATGGAGCTCTCCATGCTTCGGGAGCTGCGCTTCGG
CACCAACCCGCCGCTCGCGCACGACCTTGCCGTCCTCGCCGCCGCCCTCC
TACCTGGCGCCACCGCCGCCGACAGCGCCGGCGTTTTTATCTCTGCCGGC
AGCAGCGCTGGCGGTTACGGCGGCGGCGGCGCCGGCGGCCTCGCCGACGT
TACCGCCGCGGCCGCTGCGGGTTACCTGCTAGACATGCGCTACGAGCTAG
TGTGGCTGCGACACGACGCGCTGACGCTTGCGGCGGCCGCCGTCGCCTGC
GCGCTGGTCGGCTCCCGCCGTACGCATGCCATCAAGCCCATGCTGGCCGA
TGTGGAGGCCGCCGCCGGGCGGTCGTTGCACCTGGGCGCCGTGGTGGAGT
GCGCGGCGACGATGCTGGGGCCGTGCGCAGCGTCACTTATCCTGCAGGGC
GGTCGGAGCAGTCCGACGGGCGTCGACGGCATCGAGCATATCGAGCGCGA
TCTTTGGGCCGACCCGACGCCGCCGGAAGGCGCCGCCGCTGCCGCAAGTG
GTGGCGCTGGCCCCGGCAGCTGCGACGAGTCGTCGGCGAAGCGTCCGCTC
GCCACCACGGGGGGCGCATTCGAGGCGCAGGCGTCCAACGGCACCAAACG
CTTCCGTGCTTTCCGGGCCTCCGCCGCCCCTGCCCCCATCACCGCCGCCG
CCGCCAAGTAG
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