mRNA_P-wetherbeei_contig11411.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11411.1.1
Unique NamemRNA_P-wetherbeei_contig11411.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11411.1.1 vs. uniprot
Match: D8LLV3_ECTSI (DUF3730 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLV3_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.580e-10
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:    1 SQDEDEVRLAKAAAVLDAVRHDPERGVEFVVVLQALMSDRLPGVAALALRAVASLCRSNCLDFGAALRIVCLPGKVS 231
            S + DE RL +AA +L+    DPE G+E V  LQ  + D    V ALAL+A+A+LCRS+CLDFGAALRIV   GKV+
Sbjct:  622 SPEPDESRLCRAAGMLEICETDPELGLECVRPLQGFLGDGSSAVTALALKAIAALCRSDCLDFGAALRIVTKKGKVA 698
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BLAST of mRNA_P-wetherbeei_contig11411.1.1 vs. uniprot
Match: A0A836CP61_9STRA (DUF3730 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP61_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.260e-9
Identity = 41/73 (56.16%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:   13 DEVRLAKAAAVLDAVRHDPERGVEFVVVLQALMSDRLPGVAALALRAVASLCRSNCLDFGAALRIVCLPGKVS 231
            D +RLA AA +    + DPE GVEFV  LQA M D LPGVAALAL+      R +CLDF  ALRIV   GK+S
Sbjct:  600 DSMRLAAAATLSQLCQRDPEEGVEFVPQLQAYMQDALPGVAALALQXXXXXARQDCLDFALALRIVKKKGKLS 672
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BLAST of mRNA_P-wetherbeei_contig11411.1.1 vs. uniprot
Match: A0A5D6XN50_9STRA (DUF3730 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XN50_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 7.880e-6
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:   16 EVRLAKAAAVLDAVRHDPERGVEFVVVLQALMSDRLPGVAALALRAVASLCRSNCLDFGAALRIVCLPGKVSFLEPLTAP 255
            E  L K A +    R DPE GVE++  +QA + D    VAA+AL A+ SLC+++CLDF    +IV L  K   +  L AP
Sbjct:  516 EYELVKVATIDALCRKDPELGVEYISQIQAFLEDERVSVAAMALNAIESLCKADCLDFYVVFKIVSLKIKKKKIRCLEAP 595
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11411.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLV3_ECTSI1.580e-1054.55DUF3730 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A836CP61_9STRA3.260e-956.16DUF3730 domain-containing protein n=1 Tax=Tribonem... [more]
A0A5D6XN50_9STRA7.880e-642.50DUF3730 domain-containing protein n=1 Tax=Pythium ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11411contigP-wetherbeei_contig11411:73..2159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000021368
PFAMsDUF3730
Model size1394
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.25e-06
EggNOG OGs2CXZM@1|root,2S0XX@2759|Eukaryota,1MG27@121069|Pythiales
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-14_001800.1
DescriptionSource PGD
Cds size1392
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185910.5433109-CDS-P-wetherbeei_contig11411:72..1911683185910.5433109-CDS-P-wetherbeei_contig11411:72..191Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11411 73..191 +
1683185910.5542092-CDS-P-wetherbeei_contig11411:657..14861683185910.5542092-CDS-P-wetherbeei_contig11411:657..1486Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11411 658..1486 +
1683185910.5631738-CDS-P-wetherbeei_contig11411:1713..21571683185910.5631738-CDS-P-wetherbeei_contig11411:1713..2157Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11411 1714..2157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11411.1.1prot_P-wetherbeei_contig11411.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11411 73..2157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11411.1.1

>prot_P-wetherbeei_contig11411.1.1 ID=prot_P-wetherbeei_contig11411.1.1|Name=mRNA_P-wetherbeei_contig11411.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=464bp
SQDEDEVRLAKAAAVLDAVRHDPERGVEFVVVLQALMSDRLPGVAALALR
AVASLCRSNCLDFGAALRIVCLPGKVSFLEPLTAPWPAYSAPHRQRRQPG
PGSGPQVRQQKGSGGGGNDGSRKAPEAAAGNEEEEEEQPNEAVAEVDILV
ACALADLCGSGGAPDGADDDEEDDSADGSFEGGNDSGSGGGGGGPGSADT
SMAPERIRALGLLLQLARHPVATVRVEAFAGLSAHGEVAAAVLVAATMAP
APAPVTGCRTAATAAASADGAAKRAASAEADLATLVATSVRAAAVAALET
EADGAVHDAAAAALKPFLARECEDPAAWSYAVAGGGATTGGGAAGADAAA
AAGPSNRLLSVLPTAAAVAAAAAADPTCAGLAGAVLWSFPVAPAAATAAA
AAVPAAGTGGVARADRGTKSKGSTAKPAAAAKSAVTAAAASKGATAVAAI
AVAEAARGAALEAF
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mRNA from alignment at P-wetherbeei_contig11411:73..2159+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11411.1.1 ID=mRNA_P-wetherbeei_contig11411.1.1|Name=mRNA_P-wetherbeei_contig11411.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2087bp|location=Sequence derived from alignment at P-wetherbeei_contig11411:73..2159+ (Phaeothamnion wetherbeei SAG_119_79)
TCGCAGGACGAGGATGAGGTGCGGCTGGCCAAGGCGGCGGCGGTGCTGGA
CGCCGTGCGGCACGACCCCGAGCGCGGTGTCGAGTTCGTCGTCGTGCTGC
AGGCGCTCATGTCCGACCGGTAAATGAGTGGGAGGCCCGCGGGGGGTGAC
GGCAGGAATGATGGCGGCTGCACTGGGCAGCGAAGGTGGCTACGGCGGCG
GCGGCGCTTGCATTAGCGGCAAGGCGGCGACGATGGCTGCGTCGCGGCGG
GGGCGGATGTCATGCATGGAGAGTGGTGGCGGCAGGAGTTGCAGCAGCAG
CAACTGCAGCAGCCGAAGCGGAAATGGCGAAGCGCTGCCGGGGAAGGGTT
CGGGCGGCGGCGGGAGCGGTGCACAGCGGCGGCAACGCAAGATGTCGTTC
TCTATTCTTTTTTTCGTTCTCTTTTCTGATCTCTCAGAATGAAAAGTTCA
TTCGAAATGCAACCGGGAAACGCTTATGCTCGTGCATTCCATGTCTCTTG
TCCTCTTCGTGACGCTCCGTTCCCCGTCCACTGCGGCCTCCGTTTTTCTT
TGGCTTCCTTCTCTTCCGTGGTGACGACGCGGCAGGTTGCCCGGCGTGGC
GGCGCTCGCCCTCCGCGCCGTGGCGTCGCTCTGCCGCAGCAACTGCCTCG
ATTTCGGGGCGGCGCTGCGCATCGTCTGCCTGCCCGGCAAGGTGTCCTTC
CTTGAGCCGCTGACGGCGCCGTGGCCCGCCTACTCCGCGCCGCACCGCCA
GCGGCGGCAGCCGGGGCCGGGGTCGGGGCCGCAGGTGCGGCAACAGAAGG
GCTCCGGCGGCGGAGGTAACGACGGCAGCCGGAAGGCTCCGGAGGCTGCA
GCAGGAAATGAAGAGGAAGAGGAGGAGCAGCCAAATGAAGCAGTAGCAGA
AGTGGACATTCTCGTGGCGTGTGCGCTCGCAGACCTCTGTGGTAGCGGCG
GCGCCCCCGACGGCGCGGACGACGATGAAGAAGATGATAGTGCAGATGGC
AGCTTTGAAGGCGGCAATGACAGCGGCAGCGGCGGCGGCGGTGGCGGCCC
AGGTTCCGCAGACACCTCGATGGCGCCAGAGCGGATACGGGCGCTGGGCC
TCCTCCTGCAGCTGGCGCGGCACCCGGTCGCCACGGTGCGGGTCGAGGCC
TTCGCCGGGCTGTCGGCACACGGGGAAGTGGCAGCGGCCGTACTGGTGGC
GGCAACGATGGCGCCGGCACCGGCACCAGTGACGGGATGCCGGACAGCTG
CAACGGCGGCGGCGTCGGCGGACGGTGCAGCGAAACGTGCCGCATCGGCC
GAAGCGGATCTGGCGACCTTGGTTGCAACCTCTGTGCGTGCTGCCGCGGT
GGCGGCGCTTGAGACAGAGGCGGACGGGGCGGTGCACGACGCAGCCGCCG
CCGCTTTGAAGCCGGTGAGTTTCGCTTCACTCGTTGATTTCTCTCTGTTT
GTCTGGTCCTCTGATCCACTACACTCATCTTCAACCACTTGACGAAGGCA
GTTCACCTTCAATTCACCGCCGAGAATGGTTTGGGCATGGCAAAGAGATG
TTTTCGTTCGACTACCTACCGATGCAGCGATAGAGCGACGCCCCTTTATA
AACCAGCGGCTCGTTTCCGGTGCCTTCTTTCCATTCGACAGTTTTTGGCA
CGCGAATGCGAAGATCCGGCTGCCTGGAGCTACGCAGTCGCCGGCGGAGG
CGCCACAACCGGCGGCGGCGCCGCTGGTGCAGATGCCGCCGCCGCCGCGG
GGCCTTCGAACCGCCTTCTGTCAGTGCTTCCGACGGCGGCAGCAGTCGCG
GCGGCGGCGGCGGCGGATCCGACCTGCGCCGGCCTGGCGGGCGCCGTTCT
CTGGAGCTTTCCCGTCGCCCCCGCCGCCGCTACCGCCGCCGCCGCAGCCG
TCCCTGCCGCCGGTACGGGTGGAGTCGCTAGGGCCGATAGGGGCACAAAG
AGCAAAGGCTCGACAGCGAAGCCAGCCGCGGCGGCGAAGTCTGCCGTGAC
GGCGGCAGCGGCGTCCAAAGGCGCTACGGCGGTGGCGGCGATAGCCGTGG
CAGAGGCGGCTAGGGGCGCCGCCCTCGAAGCGTTCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11411:73..2159+

>mRNA_P-wetherbeei_contig11411.1.1 ID=mRNA_P-wetherbeei_contig11411.1.1|Name=mRNA_P-wetherbeei_contig11411.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1392bp|location=Sequence derived from alignment at P-wetherbeei_contig11411:73..2159+ (Phaeothamnion wetherbeei SAG_119_79)
TCGCAGGACGAGGATGAGGTGCGGCTGGCCAAGGCGGCGGCGGTGCTGGA
CGCCGTGCGGCACGACCCCGAGCGCGGTGTCGAGTTCGTCGTCGTGCTGC
AGGCGCTCATGTCCGACCGGTTGCCCGGCGTGGCGGCGCTCGCCCTCCGC
GCCGTGGCGTCGCTCTGCCGCAGCAACTGCCTCGATTTCGGGGCGGCGCT
GCGCATCGTCTGCCTGCCCGGCAAGGTGTCCTTCCTTGAGCCGCTGACGG
CGCCGTGGCCCGCCTACTCCGCGCCGCACCGCCAGCGGCGGCAGCCGGGG
CCGGGGTCGGGGCCGCAGGTGCGGCAACAGAAGGGCTCCGGCGGCGGAGG
TAACGACGGCAGCCGGAAGGCTCCGGAGGCTGCAGCAGGAAATGAAGAGG
AAGAGGAGGAGCAGCCAAATGAAGCAGTAGCAGAAGTGGACATTCTCGTG
GCGTGTGCGCTCGCAGACCTCTGTGGTAGCGGCGGCGCCCCCGACGGCGC
GGACGACGATGAAGAAGATGATAGTGCAGATGGCAGCTTTGAAGGCGGCA
ATGACAGCGGCAGCGGCGGCGGCGGTGGCGGCCCAGGTTCCGCAGACACC
TCGATGGCGCCAGAGCGGATACGGGCGCTGGGCCTCCTCCTGCAGCTGGC
GCGGCACCCGGTCGCCACGGTGCGGGTCGAGGCCTTCGCCGGGCTGTCGG
CACACGGGGAAGTGGCAGCGGCCGTACTGGTGGCGGCAACGATGGCGCCG
GCACCGGCACCAGTGACGGGATGCCGGACAGCTGCAACGGCGGCGGCGTC
GGCGGACGGTGCAGCGAAACGTGCCGCATCGGCCGAAGCGGATCTGGCGA
CCTTGGTTGCAACCTCTGTGCGTGCTGCCGCGGTGGCGGCGCTTGAGACA
GAGGCGGACGGGGCGGTGCACGACGCAGCCGCCGCCGCTTTGAAGCCGTT
TTTGGCACGCGAATGCGAAGATCCGGCTGCCTGGAGCTACGCAGTCGCCG
GCGGAGGCGCCACAACCGGCGGCGGCGCCGCTGGTGCAGATGCCGCCGCC
GCCGCGGGGCCTTCGAACCGCCTTCTGTCAGTGCTTCCGACGGCGGCAGC
AGTCGCGGCGGCGGCGGCGGCGGATCCGACCTGCGCCGGCCTGGCGGGCG
CCGTTCTCTGGAGCTTTCCCGTCGCCCCCGCCGCCGCTACCGCCGCCGCC
GCAGCCGTCCCTGCCGCCGGTACGGGTGGAGTCGCTAGGGCCGATAGGGG
CACAAAGAGCAAAGGCTCGACAGCGAAGCCAGCCGCGGCGGCGAAGTCTG
CCGTGACGGCGGCAGCGGCGTCCAAAGGCGCTACGGCGGTGGCGGCGATA
GCCGTGGCAGAGGCGGCTAGGGGCGCCGCCCTCGAAGCGTTC
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