mRNA_P-wetherbeei_contig11407.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11407.1.1
Unique NamemRNA_P-wetherbeei_contig11407.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11407.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11407contigP-wetherbeei_contig11407:2..1874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1873
Hectar predicted targeting categoryother localisation
Exons1
Cds size1557
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185910.3461533-UTR-P-wetherbeei_contig11407:1..1501683185910.3461533-UTR-P-wetherbeei_contig11407:1..150Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11407 2..150 +
1683185910.3678617-UTR-P-wetherbeei_contig11407:1707..18741683185910.3678617-UTR-P-wetherbeei_contig11407:1707..1874Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11407 1708..1874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185910.3562438-CDS-P-wetherbeei_contig11407:150..17071683185910.3562438-CDS-P-wetherbeei_contig11407:150..1707Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11407 151..1707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11407.1.1prot_P-wetherbeei_contig11407.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11407 151..1707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11407.1.1

>prot_P-wetherbeei_contig11407.1.1 ID=prot_P-wetherbeei_contig11407.1.1|Name=mRNA_P-wetherbeei_contig11407.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=519bp
MSASREANCIAMLCRQMRAKGEKTEKEVSSKDCRWADSPVRRGISGSTEQ
RRPTSPTVPPSTDRGSRLEEILEDLRRVRIGEDEREDEDGDNISNFGGGG
GGGADGDYGGNDPLRYLHRPHQWSDPAIAKPPRLPSLSSPRRGGDGVAAL
LAGFVLAEADTPHSARSEGPQGHWSREAWKDTAASFRWPRAAAAATTAPG
LTVAGTAYASSQLALSPEASCGGKSTAATNRRFFDSPSSPKFAPANGFRG
AAASDGEALGGGYQSQIATIIAALAAEETAAITGEFTNGRDSGAARTAAS
AAAESLSTPADEAATMPCRWADLLRRPGTPVAAAGAVRYGTTRSASGRSI
ETEDNLERQRRGQRQAHAVASPSGSRSQSPGLDLRSATRLSEPRPSSSRS
AGDIAVADASSAAASGAATATAIGAAVVEAGARTARAAAGEAAAGRAAGG
PAGMTAAAEAAAGAGRPMPPLVELVRVLHRKVRARQILAARLEVARQAKA
AQELRFASTPLCKNCGVT*
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mRNA from alignment at P-wetherbeei_contig11407:2..1874+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11407.1.1 ID=mRNA_P-wetherbeei_contig11407.1.1|Name=mRNA_P-wetherbeei_contig11407.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1873bp|location=Sequence derived from alignment at P-wetherbeei_contig11407:2..1874+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAGAGCGATATTTTTTCGCACGATTTCTTTTTGAAAGGTGGCCCGGTT
GCGACGCACCCTCTGAGCGACGCAGACACGGGCGGCATCGCCGGCGCTGC
AGATTCAATCACTTCCATCGGGAAATCGCTCCGTTCATTGCTGGAAGAGA
TGTCGGCATCGCGTGAAGCGAACTGCATCGCCATGCTGTGCCGGCAGATG
AGGGCAAAAGGAGAGAAAACAGAAAAAGAGGTGAGTTCTAAAGACTGCAG
GTGGGCCGATAGCCCCGTGAGGCGTGGCATCAGCGGCTCCACGGAGCAGC
GACGTCCCACGTCGCCGACGGTACCACCGTCTACAGATCGAGGAAGCCGA
CTGGAGGAGATATTGGAGGACCTTCGACGTGTCCGCATTGGAGAAGACGA
ACGTGAAGACGAAGACGGCGACAACATCAGCAATTTTGGCGGCGGCGGCG
GCGGCGGCGCCGACGGCGACTATGGCGGCAATGACCCTTTGAGGTACCTT
CACCGGCCCCACCAATGGTCGGATCCTGCCATCGCGAAACCGCCCCGCCT
CCCCTCCCTCAGCAGCCCGCGGCGCGGTGGCGACGGCGTTGCGGCGTTGC
TAGCCGGCTTTGTGCTGGCGGAGGCCGACACGCCACATAGCGCAAGGTCG
GAGGGACCGCAAGGGCATTGGAGTCGCGAGGCATGGAAGGACACTGCGGC
ATCGTTTCGTTGGCCCCGGGCGGCGGCGGCGGCGACGACGGCTCCGGGAC
TAACGGTTGCCGGAACTGCATACGCCAGTTCACAGCTGGCGCTGTCTCCT
GAGGCGAGCTGCGGCGGTAAAAGCACCGCAGCGACCAACCGGCGATTTTT
CGACTCACCCTCGTCACCAAAATTCGCACCGGCGAACGGCTTCCGCGGAG
CGGCGGCTTCGGATGGCGAGGCGTTAGGCGGCGGCTACCAGAGCCAGATC
GCCACCATTATCGCTGCGCTTGCTGCAGAAGAGACGGCCGCAATCACTGG
TGAATTCACCAACGGACGGGACTCGGGGGCCGCTCGGACGGCGGCGTCGG
CGGCGGCGGAATCGTTAAGTACGCCGGCAGATGAGGCGGCGACCATGCCG
TGCCGGTGGGCAGACCTGCTGCGAAGACCTGGAACGCCCGTTGCCGCCGC
TGGCGCCGTTCGGTACGGAACGACGCGAAGTGCATCCGGGCGGAGCATAG
AGACGGAGGATAATCTCGAGCGGCAGCGGCGGGGACAGCGACAGGCACAT
GCTGTTGCTTCGCCGTCAGGGTCAAGGAGCCAGTCCCCAGGGCTGGATTT
GCGGAGCGCCACCAGACTTTCCGAACCGAGGCCCTCAAGCAGCAGGAGCG
CTGGTGACATTGCAGTGGCGGACGCATCGTCAGCGGCAGCGTCGGGAGCA
GCGACGGCAACGGCGATCGGAGCAGCGGTAGTGGAGGCAGGGGCGAGGAC
GGCGCGAGCAGCAGCAGGGGAAGCGGCGGCAGGAAGAGCGGCGGGTGGAC
CGGCGGGAATGACGGCAGCGGCGGAAGCGGCGGCGGGAGCCGGGCGGCCG
ATGCCACCCCTGGTGGAGCTGGTGCGGGTATTGCACCGCAAAGTGCGGGC
GAGGCAGATCCTGGCGGCGCGACTAGAGGTGGCGCGGCAGGCGAAGGCGG
CACAAGAGCTGCGCTTCGCATCGACGCCGCTGTGTAAAAATTGCGGTGTA
ACATAAGTATGACGTTGTTAAGTCTTCATGCCGGGATGTGATCCCCCGAT
CTAACCGCAGCGGAATTATGAAAAGCCTTAAAACACGTCTTAGTCGAAGA
AGGCTGTGTAGAATCTGAACACGCGCTGGAGCTAAGGACGCCGTAAGGCA
CAGCTGGTGAAAATGTAGAGTAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11407:2..1874+

>mRNA_P-wetherbeei_contig11407.1.1 ID=mRNA_P-wetherbeei_contig11407.1.1|Name=mRNA_P-wetherbeei_contig11407.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1557bp|location=Sequence derived from alignment at P-wetherbeei_contig11407:2..1874+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGCATCGCGTGAAGCGAACTGCATCGCCATGCTGTGCCGGCAGAT
GAGGGCAAAAGGAGAGAAAACAGAAAAAGAGGTGAGTTCTAAAGACTGCA
GGTGGGCCGATAGCCCCGTGAGGCGTGGCATCAGCGGCTCCACGGAGCAG
CGACGTCCCACGTCGCCGACGGTACCACCGTCTACAGATCGAGGAAGCCG
ACTGGAGGAGATATTGGAGGACCTTCGACGTGTCCGCATTGGAGAAGACG
AACGTGAAGACGAAGACGGCGACAACATCAGCAATTTTGGCGGCGGCGGC
GGCGGCGGCGCCGACGGCGACTATGGCGGCAATGACCCTTTGAGGTACCT
TCACCGGCCCCACCAATGGTCGGATCCTGCCATCGCGAAACCGCCCCGCC
TCCCCTCCCTCAGCAGCCCGCGGCGCGGTGGCGACGGCGTTGCGGCGTTG
CTAGCCGGCTTTGTGCTGGCGGAGGCCGACACGCCACATAGCGCAAGGTC
GGAGGGACCGCAAGGGCATTGGAGTCGCGAGGCATGGAAGGACACTGCGG
CATCGTTTCGTTGGCCCCGGGCGGCGGCGGCGGCGACGACGGCTCCGGGA
CTAACGGTTGCCGGAACTGCATACGCCAGTTCACAGCTGGCGCTGTCTCC
TGAGGCGAGCTGCGGCGGTAAAAGCACCGCAGCGACCAACCGGCGATTTT
TCGACTCACCCTCGTCACCAAAATTCGCACCGGCGAACGGCTTCCGCGGA
GCGGCGGCTTCGGATGGCGAGGCGTTAGGCGGCGGCTACCAGAGCCAGAT
CGCCACCATTATCGCTGCGCTTGCTGCAGAAGAGACGGCCGCAATCACTG
GTGAATTCACCAACGGACGGGACTCGGGGGCCGCTCGGACGGCGGCGTCG
GCGGCGGCGGAATCGTTAAGTACGCCGGCAGATGAGGCGGCGACCATGCC
GTGCCGGTGGGCAGACCTGCTGCGAAGACCTGGAACGCCCGTTGCCGCCG
CTGGCGCCGTTCGGTACGGAACGACGCGAAGTGCATCCGGGCGGAGCATA
GAGACGGAGGATAATCTCGAGCGGCAGCGGCGGGGACAGCGACAGGCACA
TGCTGTTGCTTCGCCGTCAGGGTCAAGGAGCCAGTCCCCAGGGCTGGATT
TGCGGAGCGCCACCAGACTTTCCGAACCGAGGCCCTCAAGCAGCAGGAGC
GCTGGTGACATTGCAGTGGCGGACGCATCGTCAGCGGCAGCGTCGGGAGC
AGCGACGGCAACGGCGATCGGAGCAGCGGTAGTGGAGGCAGGGGCGAGGA
CGGCGCGAGCAGCAGCAGGGGAAGCGGCGGCAGGAAGAGCGGCGGGTGGA
CCGGCGGGAATGACGGCAGCGGCGGAAGCGGCGGCGGGAGCCGGGCGGCC
GATGCCACCCCTGGTGGAGCTGGTGCGGGTATTGCACCGCAAAGTGCGGG
CGAGGCAGATCCTGGCGGCGCGACTAGAGGTGGCGCGGCAGGCGAAGGCG
GCACAAGAGCTGCGCTTCGCATCGACGCCGCTGTGTAAAAATTGCGGTGT
AACATAA
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