mRNA_P-wetherbeei_contig1140.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1140.4.1
Unique NamemRNA_P-wetherbeei_contig1140.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1140.4.1 vs. uniprot
Match: D7FPE7_ECTSI (Intraflagellar transport protein 74 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE7_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 5.840e-10
Identity = 30/53 (56.60%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:   25 QDESSFKEKQLRSSETTMKRLQQEREKRQQELERINSLDQKIPPEIQALKDRI 183
            +DE SFK+KQL+SSE TM+RL Q++EKR QE+E++ +LD+KIP E+  LK+++
Sbjct:    2 EDEKSFKDKQLKSSEATMRRLHQDKEKRLQEMEKVKTLDEKIPLELNNLKEKM 54
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BLAST of mRNA_P-wetherbeei_contig1140.4.1 vs. uniprot
Match: A0A6V2XWW9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2XWW9_HETAK)

HSP 1 Score: 57.4 bits (137), Expect = 5.050e-8
Identity = 30/52 (57.69%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:   28 DESSFKEKQLRSSETTMKRLQQEREKRQQELERINSLDQKIPPEIQALKDRI 183
            DE+ FKEKQL +S+ TM RL+QE+EKR QE+E+IN+LD KI  E++ L D++
Sbjct:  421 DEARFKEKQLETSQMTMARLRQEKEKRLQEMEKINTLDDKIAEELRGLNDQM 472
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BLAST of mRNA_P-wetherbeei_contig1140.4.1 vs. uniprot
Match: A0A2R5GD01_9STRA (Intraflagellar transport protein 74-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GD01_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.940e-5
Identity = 27/52 (51.92%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:   28 DESSFKEKQLRSSETTMKRLQQEREKRQQELERINSLDQKIPPEIQALKDRI 183
            D  +FK++QL SS +TM++L++E EKR+ ELE+IN+LD+KI  E+++L +RI
Sbjct:  406 DALTFKKRQLESSASTMEQLEKELEKRRGELEKINTLDEKIEVELKSLTERI 457
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1140.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FPE7_ECTSI5.840e-1056.60Intraflagellar transport protein 74 n=1 Tax=Ectoca... [more]
A0A6V2XWW9_HETAK5.050e-857.69Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2R5GD01_9STRA1.940e-551.92Intraflagellar transport protein 74-like n=1 Tax=H... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1140contigP-wetherbeei_contig1140:7459..7653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog109760.SPPG_03805T0
Model size195
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000137
EggNOG OGs28JR0@1|root,2QS4E@2759|Eukaryota,394GU@33154|Opisthokonta,3PBV4@4751|Fungi
Descriptionbeta-tubulin binding
Cds size195
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185910.2556083-CDS-P-wetherbeei_contig1140:7458..76531683185910.2556083-CDS-P-wetherbeei_contig1140:7458..7653Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1140 7459..7653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1140.4.1prot_P-wetherbeei_contig1140.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1140 7459..7653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1140.4.1

>prot_P-wetherbeei_contig1140.4.1 ID=prot_P-wetherbeei_contig1140.4.1|Name=mRNA_P-wetherbeei_contig1140.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
TAVRRAAWQDESSFKEKQLRSSETTMKRLQQEREKRQQELERINSLDQKI
PPEIQALKDRITQAS
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mRNA from alignment at P-wetherbeei_contig1140:7459..7653-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1140.4.1 ID=mRNA_P-wetherbeei_contig1140.4.1|Name=mRNA_P-wetherbeei_contig1140.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig1140:7459..7653- (Phaeothamnion wetherbeei SAG_119_79)
ACGGCTGTACGGCGCGCGGCGTGGCAGGATGAGTCGAGCTTCAAGGAGAA
GCAGCTCCGGAGCAGCGAGACGACAATGAAACGGCTGCAGCAGGAACGGG
AGAAGCGGCAGCAGGAGCTCGAGAGGATAAACTCCCTCGACCAGAAGATT
CCCCCGGAGATCCAGGCGCTCAAGGACCGCATCACTCAGGCAAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1140:7459..7653-

>mRNA_P-wetherbeei_contig1140.4.1 ID=mRNA_P-wetherbeei_contig1140.4.1|Name=mRNA_P-wetherbeei_contig1140.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig1140:7459..7653- (Phaeothamnion wetherbeei SAG_119_79)
ACGGCTGTACGGCGCGCGGCGTGGCAGGATGAGTCGAGCTTCAAGGAGAA
GCAGCTCCGGAGCAGCGAGACGACAATGAAACGGCTGCAGCAGGAACGGG
AGAAGCGGCAGCAGGAGCTCGAGAGGATAAACTCCCTCGACCAGAAGATT
CCCCCGGAGATCCAGGCGCTCAAGGACCGCATCACTCAGGCAAGC
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