mRNA_P-wetherbeei_contig1140.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1140.1.2
Unique NamemRNA_P-wetherbeei_contig1140.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1140.1.2 vs. uniprot
Match: D8LHE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE0_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 1.550e-45
Identity = 86/186 (46.24%), Postives = 116/186 (62.37%), Query Frame = 1 
Query:    1 LVHSHKQTELCKHFMQGNCPYGGASKCAFAHGNHDLRTLTLEEMESTGRIPNKQKFRCYPCITWCATGSCPYFGRCVFLHDTRLRGPAPAWLY----NANTATRSAAFGGPSPFARDLLFWPDVKRHVDDGQRV--------------------PSAEAQYELDPAMDSGDDFVRRAVYRLWYSLI 486
            LV  +++TE+C+++ QG C    A KCAFAHG H+LR  +L++ME TGRIPN  KFRCYPC+TW  TG+CPYF RCVF+HD R+RGP  A+LY    N + +TRS    G SP  RD+ +WPD+ R   DG  +                    P+  A Y++DP+M   +D   RAVY+LWY+L+
Sbjct:    8 LVSVNRKTEICRNWQQGRC-VAEAWKCAFAHGTHELRRQSLDQMEYTGRIPNASKFRCYPCLTWITTGACPYFSRCVFIHDPRIRGPTAAYLYKHNGNRSHSTRSGGSVG-SPLGRDIFYWPDMPRTDADGNEIMDPSAWMDVAQLMIVGVSSLPTVSANYDMDPSMLHSEDATERAVYQLWYTLV 191
[Close]
BLAST of mRNA_P-wetherbeei_contig1140.1.2 vs. uniprot
Match: A0A7S2XMC7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMC7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.760e-13
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 1 
Query:   19 QTELCKHFMQGN-CPYGGASKCAFAHGNHDLRTLTLEEMESTGRIPNKQKFRCYPCITWCATGSCPYFGRCVFLHDTRLRGPAPAWLYNANTATRSAAFG 315
            +T LC ++  G  CP+   S+C +AHG+ +L+   L  ME+ G + + + FR +PC+TW ATG+CP+  +C  LHD R  G  P WL N  T+  +   G
Sbjct:  309 KTVLCNYYKTGKACPF--RSECLYAHGDDELKYTKLMAMENAGLV-DVETFRTHPCLTWIATGACPFDSKCELLHDPRAAGSIPPWLPNVKTSINNDISG 405
[Close]
BLAST of mRNA_P-wetherbeei_contig1140.1.2 vs. uniprot
Match: A0A7S3Q9Y3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q9Y3_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.300e-10
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   19 QTELCKHF-MQGNCPYGGASKCAFAHGNHDLRTLTLEEMESTGRIPNKQKFRCYPCITWCATGSCPYFGRCVFLHDTRLRGP--APAWLYNANTATRSAAFG 315
            +TELC++F  +  C +G   KC +AHG  +L+   L ++E  G + + + FR +PC+TW ATG+CP+  RC+ LHD R+       AWL +A T       G
Sbjct:  423 KTELCRNFNTRRGCQFG--DKCNYAHGAQELKLTKLMDLERAGLV-DIEIFRTHPCLTWVATGACPFDTRCIGLHDPRVTSDDHEMAWLPHAETMINKVTDG 521
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1140.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHE0_ECTSI1.550e-4546.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XMC7_9STRA3.760e-1339.00Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S3Q9Y3_9STRA2.300e-1038.24Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1140contigP-wetherbeei_contig1140:19..2756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LHE0
PFAMszf-CCCH
Model size2322
Max annot lvl2759|Eukaryota
KEGG koko:K06236,ko:K18753
KEGG Pathwayko04151,ko04218,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04218,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005938,GO:0044424,GO:0044444,GO:0044464,GO:0071944,GO:0099568
Exons3
Evalue1.35e-44
EggNOG OGsCOG5063@1|root,KOG1677@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, CCCH-type
Ec32 orthologEc-13_000470.1
Description3'-UTR-mediated mRNA destabilization
Cds size1158
COG categoryK
BRITEko00000,ko00001,ko00536,ko03019,ko04516
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185910.0194771-UTR-P-wetherbeei_contig1140:18..601683185910.0194771-UTR-P-wetherbeei_contig1140:18..60Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1140 19..60 +
1683185910.0596528-UTR-P-wetherbeei_contig1140:1634..27561683185910.0596528-UTR-P-wetherbeei_contig1140:1634..2756Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1140 1635..2756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185910.0304244-CDS-P-wetherbeei_contig1140:60..931683185910.0304244-CDS-P-wetherbeei_contig1140:60..93Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1140 61..93 +
1683185910.0392418-CDS-P-wetherbeei_contig1140:313..4291683185910.0392418-CDS-P-wetherbeei_contig1140:313..429Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1140 314..429 +
1683185910.048004-CDS-P-wetherbeei_contig1140:625..16341683185910.048004-CDS-P-wetherbeei_contig1140:625..1634Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1140 626..1634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1140.1.2prot_P-wetherbeei_contig1140.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1140 61..1634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1140.1.2

>prot_P-wetherbeei_contig1140.1.2 ID=prot_P-wetherbeei_contig1140.1.2|Name=mRNA_P-wetherbeei_contig1140.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=386bp
MQGNCPYGGASKCAFAHGNHDLRTLTLEEMESTGRIPNKQKFRCYPCITW
CATGSCPYFGRCVFLHDTRLRGPAPAWLYNANTATRSAAFGGPSPFARDL
LFWPDVKRHVDDGQRVPSAEAQYELDPAMDSGDDFVRRAVYRLWYSLIDF
CHEASGDGDDGACTALLLPPELGGAACCVPAGPASFAAKKLHVHDNDRLA
VFITLAKGVSVAPFSAPLWQLPSAVGNEQNLCGACLCRVVHVKDVSMDKN
AALEGCPAAVAATAVSGHAAGGHNGPEKRVDAGKRGVAGNGPALADKRTT
VLPLGTSVAGRNGNVANSGLPKGDWRRLALLRKLHASGNDRGIVYKLFFA
EGQHCAANGANAPNAVNAPPTTCGMRRALAAPDRW*
back to top

mRNA from alignment at P-wetherbeei_contig1140:19..2756+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1140.1.2 ID=mRNA_P-wetherbeei_contig1140.1.2|Name=mRNA_P-wetherbeei_contig1140.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2738bp|location=Sequence derived from alignment at P-wetherbeei_contig1140:19..2756+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGTCCACTCCCACAAACAGACGGAGCTGTGCAAGCATTTCATGCAGGG
CAACTGTCCTTATGGAGGTGCGAGCGTTCGTGGCAGTTTCCGAATCGACT
TGGGAAGAATTTGAATTGGATTCTTTGAAAAGGGCGGCAGCTCGGTCCAG
TTTAACTCGCTCTAACAATGCCTTGAAGTTTCGCGGAAAGCCGCGCACGA
TGCGGGCGCGGTTGTGCAGCTGGTGCTTCACTCACCGAAATGCCCAATTG
TGTCACGCCCTCTGCTATACGAAAAACGCCCCTTGACACACAGAGAAGTG
CGCGTTCGCCCACGGGAACCATGACCTGCGGACGCTGACGCTCGAGGAGA
TGGAGAGCACCGGCCGCATCCCCAACAAGCAAAAGTTCCGCTGCTACCCG
TGCATCACCTGGTGAGACTCACGGATCGATTTGGGTGAAGCGATAAAAGA
GTCCGCGACGCCATTATAGGCTTTGCGCTGGATAGAAGCGTGGGGATCGT
AATCCTTTTGCGTCCAAGTCTCGCTAGCGGCTTTTCTCGCTCTCTTTCGC
AATCTGACAAACTCTGTCAGACCTCCTCTGTTTCAAAAAACTCCCAATTC
CCGCCAGGTGCGCGACGGGCTCCTGCCCCTACTTCGGCCGCTGCGTCTTC
TTGCACGACACGCGGCTGCGCGGGCCCGCCCCGGCCTGGCTCTACAATGC
GAACACCGCCACCCGGTCCGCCGCCTTCGGCGGGCCATCGCCCTTCGCCC
GCGACCTGCTCTTCTGGCCGGACGTCAAGCGCCACGTCGACGACGGCCAG
CGCGTGCCCTCCGCCGAGGCGCAGTACGAGCTGGACCCCGCCATGGACTC
CGGCGACGACTTCGTGCGCCGCGCTGTCTACCGCCTGTGGTATTCGCTCA
TCGACTTCTGCCACGAGGCCTCGGGCGACGGCGATGACGGCGCGTGCACC
GCGCTGTTGCTGCCGCCGGAGCTGGGCGGCGCCGCCTGCTGTGTCCCGGC
GGGCCCGGCGTCGTTTGCCGCCAAGAAGCTGCATGTGCACGACAACGACC
GGCTGGCCGTCTTCATCACGCTCGCCAAGGGCGTCTCCGTGGCGCCCTTC
AGCGCGCCGCTCTGGCAGCTCCCGTCGGCCGTCGGCAACGAGCAGAACCT
CTGCGGCGCGTGTCTCTGCCGCGTGGTGCACGTCAAGGACGTCAGCATGG
ACAAGAACGCCGCACTGGAGGGCTGCCCCGCCGCCGTCGCCGCCACCGCC
GTCAGCGGCCACGCCGCCGGCGGCCATAACGGGCCGGAGAAGCGGGTCGA
CGCGGGCAAGCGAGGCGTCGCAGGCAACGGCCCCGCCTTGGCCGACAAGC
GCACGACCGTCCTCCCACTGGGCACGTCCGTCGCGGGGCGCAACGGCAAC
GTCGCCAATAGCGGCCTCCCCAAGGGCGACTGGCGCCGTCTCGCCCTGCT
GCGCAAGCTGCACGCCTCCGGCAATGACCGTGGTATCGTCTACAAGCTCT
TCTTCGCCGAGGGCCAGCACTGCGCCGCCAACGGCGCCAACGCCCCCAAC
GCCGTCAACGCGCCGCCGACCACGTGCGGCATGCGCCGCGCCCTCGCGGC
GCCCGATCGCTGGTGAAGGGCGGGGTTGCCGGGGACAGCAACGGCGGCAG
CGGCCAGCGAAGGAGCGCCACCGCGTGCCGTCTGATGGGGCGTTCTGCAG
CTGGTGGGGCGCCTGGCGCGGCGGCGGGAACTCCCGACGGTGGCGCTCAC
CGAACGTCTGCGGGGGAGGCTGAAAGAGATCTCATGGATTTGGGACGCCT
TTAGGGATTGAGAGGCAATTGTGTGTATCGGGCGTTGAGCAGGGGCTGTA
TGGGGGCGCGGCCTTGCGGCGTAAGGGTTGTGCTGCTAGTAGTATTGCGA
GGCCGTAGACCTTATGCCTCCCCGCGGAGTGGCGCGGGAAGGCGGTCAGT
TTTTTGTTTTATACTTGTGTGAGCCGAGAGTCGGCGCGTATTGCTGGCCG
CCATGCCGCTCTCGAACTGAGCGGAACCTTCAGGAGTTGCAGTGCAGAAA
GCCGGGGCGGCAGTCGCGGCAGCGCGTGGCTACGGCATCGACTAAGCCGT
CGCTGGGGGGAAAAGGGCAGGCTCCCTTGGCCACGAAAATGGCCGGAGTA
AGACTTCTGGCAGGCCGGCCGAAGCAGGAAAGAAGCGCCAGTATTAAAGG
AGTACAAGAGAGGGCATCTTTACATAGGCGCCACCAAGCAAGCGCCCAAG
ACGAGGGGAATGAAGGGAGGGCGCAGCGGAAGGAAGGAACTGGCACTGGG
ACCGAAAAAGCATCTATCTCTCGCCAAGCGGCAACGAGGGCGCGCGGAGG
GGGATAACGGCATTGTAGACGACATCACATCACCACATGCGCACTTCGGT
GCTTCCTGGCAAGACGGGGGGCGGGGAGGAGCGGGGAACGGGCGACGGGC
GGCAGCCCGGTATCGCGATGCGGCGGCGGCCACGTTTCGACCTGACGGTG
GCGGCGGCTGGCGCGGCCCAGCTGCAGGAACCGGGGGGCGGTGGACAACC
AGCCTGCATTGACTGCCGTCTGTGCCGGTGACAAGAAAAAAAGAAAAGAA
AAGGCGCCGTCCTTGCGGCGCGCGACAAGCGCCGCGGCCGCGGCGGGCCG
ACAGCAGGCCTGCCGCCCAGCCGCTGCGCAGGGCGGACGCTCTGGGAAGG
AGAGAATGACGCATCATGAATGGAAAGAGGAATCACGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1140:19..2756+

>mRNA_P-wetherbeei_contig1140.1.2 ID=mRNA_P-wetherbeei_contig1140.1.2|Name=mRNA_P-wetherbeei_contig1140.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1158bp|location=Sequence derived from alignment at P-wetherbeei_contig1140:19..2756+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGGCAACTGTCCTTATGGAGGTGCGAGCAAGTGCGCGTTCGCCCA
CGGGAACCATGACCTGCGGACGCTGACGCTCGAGGAGATGGAGAGCACCG
GCCGCATCCCCAACAAGCAAAAGTTCCGCTGCTACCCGTGCATCACCTGG
TGCGCGACGGGCTCCTGCCCCTACTTCGGCCGCTGCGTCTTCTTGCACGA
CACGCGGCTGCGCGGGCCCGCCCCGGCCTGGCTCTACAATGCGAACACCG
CCACCCGGTCCGCCGCCTTCGGCGGGCCATCGCCCTTCGCCCGCGACCTG
CTCTTCTGGCCGGACGTCAAGCGCCACGTCGACGACGGCCAGCGCGTGCC
CTCCGCCGAGGCGCAGTACGAGCTGGACCCCGCCATGGACTCCGGCGACG
ACTTCGTGCGCCGCGCTGTCTACCGCCTGTGGTATTCGCTCATCGACTTC
TGCCACGAGGCCTCGGGCGACGGCGATGACGGCGCGTGCACCGCGCTGTT
GCTGCCGCCGGAGCTGGGCGGCGCCGCCTGCTGTGTCCCGGCGGGCCCGG
CGTCGTTTGCCGCCAAGAAGCTGCATGTGCACGACAACGACCGGCTGGCC
GTCTTCATCACGCTCGCCAAGGGCGTCTCCGTGGCGCCCTTCAGCGCGCC
GCTCTGGCAGCTCCCGTCGGCCGTCGGCAACGAGCAGAACCTCTGCGGCG
CGTGTCTCTGCCGCGTGGTGCACGTCAAGGACGTCAGCATGGACAAGAAC
GCCGCACTGGAGGGCTGCCCCGCCGCCGTCGCCGCCACCGCCGTCAGCGG
CCACGCCGCCGGCGGCCATAACGGGCCGGAGAAGCGGGTCGACGCGGGCA
AGCGAGGCGTCGCAGGCAACGGCCCCGCCTTGGCCGACAAGCGCACGACC
GTCCTCCCACTGGGCACGTCCGTCGCGGGGCGCAACGGCAACGTCGCCAA
TAGCGGCCTCCCCAAGGGCGACTGGCGCCGTCTCGCCCTGCTGCGCAAGC
TGCACGCCTCCGGCAATGACCGTGGTATCGTCTACAAGCTCTTCTTCGCC
GAGGGCCAGCACTGCGCCGCCAACGGCGCCAACGCCCCCAACGCCGTCAA
CGCGCCGCCGACCACGTGCGGCATGCGCCGCGCCCTCGCGGCGCCCGATC
GCTGGTGA
back to top