mRNA_P-wetherbeei_contig11396.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11396.1.1
Unique NamemRNA_P-wetherbeei_contig11396.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11396.1.1 vs. uniprot
Match: D7FZY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY2_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 6.500e-6
Identity = 79/235 (33.62%), Postives = 101/235 (42.98%), Query Frame = 1 
Query:    1 RSIGYQTISKLQYNPVSVPNAVFDARRQLWEPLDGFLVDLSGFDEADETDAGVETDETPGASSAXXXXXXXXXXXXXXGLRLPREDVGGGSSXXXXXXXXXXXXXXXXXXGGGEKQ--PSGRGTPRAGPQ--LLGSLVCVGIGDVAAGRAAAGSGGVGXXXXXXXXXXXXGGPRERAKSAPGWRRGQGSGGADFQLAATTIRLFLRCEQRHDEAVRLFLGRQGFARVKKEGALQL 693
            R+ G+QTIS  +Y P+ VP A  D +   W+P+DG+ VD+SGFD              P  SS                        GGG  XXXXXXXXXXXX      G   +   P G    RAG +    G+ V  G  +    R +  S G              G P  + +      RG     A FQL     +   + EQ HDEA+ LFLG QG+AR K+EGA +L
Sbjct: 1788 RTRGFQTISLAEYTPMYVPTAWLDPKSHRWKPVDGYAVDMSGFD--------------PDGSS------------------------GGGXXXXXXXXXXXXXXLSNAVAGNVSRNNPPPGAEGGRAGGEEGRQGARVGGGRAEGLGARPSL-SRGASAVSVSSSAGTWAGTPSSQERGCRRPSRGFEDRLAAFQLGPAARQHLAKSEQAHDEAMALFLGEQGYARAKREGAARL 1983
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11396.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZY2_ECTSI6.500e-633.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11396contigP-wetherbeei_contig11396:17..2160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1893
Hectar predicted targeting categoryother localisation
Exons2
Cds size1893
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185909.6595106-CDS-P-wetherbeei_contig11396:16..12551683185909.6595106-CDS-P-wetherbeei_contig11396:16..1255Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11396 17..1255 -
1683185909.669552-CDS-P-wetherbeei_contig11396:1506..21601683185909.669552-CDS-P-wetherbeei_contig11396:1506..2160Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11396 1507..2160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11396.1.1prot_P-wetherbeei_contig11396.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11396 17..2160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11396.1.1

>prot_P-wetherbeei_contig11396.1.1 ID=prot_P-wetherbeei_contig11396.1.1|Name=mRNA_P-wetherbeei_contig11396.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=631bp
RSIGYQTISKLQYNPVSVPNAVFDARRQLWEPLDGFLVDLSGFDEADETD
AGVETDETPGASSAATPPASGTAAPPGLGLRLPREDVGGGSSGGGGAGGA
SGNASGNASGGGGEKQPSGRGTPRAGPQLLGSLVCVGIGDVAAGRAAAGS
GGVGGSGGVGGSGGAAGGPRERAKSAPGWRRGQGSGGADFQLAATTIRLF
LRCEQRHDEAVRLFLGRQGFARVKKEGALQLRAKTPLAAGYEVAAAAPVP
VRRAPRVLGFGSPRHSPHSRSGSTSSGGGHGSGAEGRAASGRRRGGSNGA
AALAAVVTAATVAASGAAAAIAGRPTAASSAVSVAATRRRGSRSRQGQWL
EELRSPDRSRASEDTTGAPNCWGSDSDGISLGDASRGGGGGGGRSGGRSG
TGGRNGGSGDGGGGDGGARGSHRVQRDRSESPAPAPGVRPRSRSGSRERV
GGGVRLRLSSPGAGPRLRCSSGSGRAAAAASVATVANCASAAHAAVTSHP
GNLKSHASAFVSTDDTEAPPLAATAAAAGTAHRRCAASGTVGADAAGSPH
SDASGAASSSGTMAAVAAADGTANDASFAGTAMQRGGLRSPRLPGSVTGG
PNMGAAAAARQRPSLAAMQGGPVRATVGVGG
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mRNA from alignment at P-wetherbeei_contig11396:17..2160-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11396.1.1 ID=mRNA_P-wetherbeei_contig11396.1.1|Name=mRNA_P-wetherbeei_contig11396.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2144bp|location=Sequence derived from alignment at P-wetherbeei_contig11396:17..2160- (Phaeothamnion wetherbeei SAG_119_79)
CGGTCGATCGGCTACCAGACCATCAGCAAGCTGCAGTACAACCCTGTGTC
GGTGCCCAACGCCGTCTTCGACGCCCGCCGTCAGCTTTGGGAGCCTCTCG
ATGGGTTCCTCGTGGACCTTTCGGGCTTTGACGAAGCCGATGAGACCGAC
GCCGGCGTCGAAACAGACGAAACTCCCGGCGCCTCCTCCGCCGCGACTCC
CCCCGCGTCTGGAACCGCTGCGCCGCCGGGCTTGGGGCTGCGTTTGCCGC
GGGAAGACGTTGGCGGCGGCAGCAGCGGCGGTGGTGGCGCTGGCGGCGCT
TCCGGCAACGCTTCCGGCAACGCTTCCGGCGGCGGTGGCGAGAAGCAGCC
GTCGGGACGCGGCACGCCTCGAGCCGGGCCGCAACTTCTGGGAAGCCTCG
TCTGCGTCGGCATCGGTGATGTGGCGGCTGGTCGCGCCGCTGCAGGAAGT
GGCGGCGTTGGCGGCAGCGGCGGCGTTGGCGGCAGCGGCGGCGCTGCCGG
CGGGCCCCGGGAGCGGGCGAAGAGCGCGCCGGGGTGGCGGCGAGGGCAAG
GAAGCGGCGGCGCGGACTTTCAGCTCGCGGCGACCACGATCCGACTCTTT
CTGCGCTGCGAGCAGCGGCACGACGAAGCAGTCCGGCTCTTCCTGGGGCG
GCAGGTGCGTTAGTCTCCTTTGCAGTGCATTTCTGCGCCGGAGTTCCTCT
ATGCTTACCTAGAGATTCAGAATAGGATTTCAGGTTGCCTCTCAGGTTTC
CGTCTCGTTGAAGATGCACCTGTCGTTTTCATTCTCTTACGTCCATTCTG
AAGCGAACCACTCCGTCCGTTCTTCGACAATGCACCAGTATCGCACGAAA
GGTTGTTCGTTTGAGGAACGTTACATATTCATATCTTTTCTTGCTGCTTG
CTCAGGGCTTCGCCCGCGTTAAGAAGGAAGGGGCACTGCAGCTGCGGGCC
AAAACCCCGCTTGCCGCGGGCTACGAGGTGGCAGCGGCGGCGCCAGTCCC
CGTGCGCCGGGCGCCGCGCGTGCTCGGCTTCGGCTCGCCACGCCACAGCC
CCCATAGTCGCAGTGGCAGCACCAGCAGTGGCGGCGGCCATGGCTCCGGC
GCCGAGGGCCGCGCCGCCTCCGGCAGGCGACGGGGCGGTAGCAATGGGGC
GGCGGCGCTTGCGGCAGTGGTGACCGCCGCTACTGTTGCAGCAAGTGGTG
CGGCGGCCGCCATAGCGGGAAGGCCAACCGCCGCATCATCGGCCGTGTCC
GTGGCGGCAACAAGACGGCGGGGCTCCCGCTCGCGGCAAGGGCAGTGGCT
AGAGGAATTGCGAAGCCCTGACCGGTCACGAGCATCAGAAGACACGACCG
GTGCGCCCAACTGCTGGGGCAGCGACTCCGATGGCATCTCTCTCGGAGAC
GCTTCTCGCGGCGGTGGCGGTGGCGGCGGCAGGAGCGGCGGCAGGAGCGG
CACCGGCGGCAGGAACGGCGGCAGCGGCGACGGTGGCGGTGGTGACGGCG
GCGCCCGCGGTTCCCACCGCGTCCAGCGCGACCGCTCAGAGTCCCCGGCA
CCAGCGCCCGGGGTCCGGCCGCGCAGCCGCAGCGGGAGCCGCGAGCGCGT
CGGCGGCGGCGTGCGGCTACGGTTGTCCAGCCCGGGTGCGGGGCCGCGAC
TGAGGTGCAGCAGCGGTAGCGGCAGAGCGGCAGCTGCCGCCAGCGTCGCT
ACCGTCGCCAACTGCGCTTCTGCCGCTCACGCAGCCGTCACCTCGCACCC
CGGGAACTTAAAATCGCACGCATCTGCGTTCGTGTCGACGGACGATACGG
AGGCGCCGCCGCTGGCGGCAACCGCCGCGGCGGCAGGCACCGCGCATCGG
CGGTGCGCCGCCTCTGGAACCGTCGGCGCCGACGCTGCCGGGAGCCCGCA
CAGCGATGCCTCCGGCGCGGCTTCTTCCTCTGGCACGATGGCCGCCGTTG
CCGCCGCCGATGGGACGGCCAACGATGCTTCTTTCGCCGGCACAGCGATG
CAACGGGGCGGGCTGCGCAGCCCGCGGCTGCCGGGAAGCGTCACCGGCGG
GCCCAATATGGGCGCAGCCGCCGCGGCGCGGCAGCGCCCGAGCCTGGCTG
CGATGCAGGGCGGCCCGGTGCGGGCGACCGTCGGCGTCGGTGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11396:17..2160-

>mRNA_P-wetherbeei_contig11396.1.1 ID=mRNA_P-wetherbeei_contig11396.1.1|Name=mRNA_P-wetherbeei_contig11396.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1893bp|location=Sequence derived from alignment at P-wetherbeei_contig11396:17..2160- (Phaeothamnion wetherbeei SAG_119_79)
CGGTCGATCGGCTACCAGACCATCAGCAAGCTGCAGTACAACCCTGTGTC
GGTGCCCAACGCCGTCTTCGACGCCCGCCGTCAGCTTTGGGAGCCTCTCG
ATGGGTTCCTCGTGGACCTTTCGGGCTTTGACGAAGCCGATGAGACCGAC
GCCGGCGTCGAAACAGACGAAACTCCCGGCGCCTCCTCCGCCGCGACTCC
CCCCGCGTCTGGAACCGCTGCGCCGCCGGGCTTGGGGCTGCGTTTGCCGC
GGGAAGACGTTGGCGGCGGCAGCAGCGGCGGTGGTGGCGCTGGCGGCGCT
TCCGGCAACGCTTCCGGCAACGCTTCCGGCGGCGGTGGCGAGAAGCAGCC
GTCGGGACGCGGCACGCCTCGAGCCGGGCCGCAACTTCTGGGAAGCCTCG
TCTGCGTCGGCATCGGTGATGTGGCGGCTGGTCGCGCCGCTGCAGGAAGT
GGCGGCGTTGGCGGCAGCGGCGGCGTTGGCGGCAGCGGCGGCGCTGCCGG
CGGGCCCCGGGAGCGGGCGAAGAGCGCGCCGGGGTGGCGGCGAGGGCAAG
GAAGCGGCGGCGCGGACTTTCAGCTCGCGGCGACCACGATCCGACTCTTT
CTGCGCTGCGAGCAGCGGCACGACGAAGCAGTCCGGCTCTTCCTGGGGCG
GCAGGGCTTCGCCCGCGTTAAGAAGGAAGGGGCACTGCAGCTGCGGGCCA
AAACCCCGCTTGCCGCGGGCTACGAGGTGGCAGCGGCGGCGCCAGTCCCC
GTGCGCCGGGCGCCGCGCGTGCTCGGCTTCGGCTCGCCACGCCACAGCCC
CCATAGTCGCAGTGGCAGCACCAGCAGTGGCGGCGGCCATGGCTCCGGCG
CCGAGGGCCGCGCCGCCTCCGGCAGGCGACGGGGCGGTAGCAATGGGGCG
GCGGCGCTTGCGGCAGTGGTGACCGCCGCTACTGTTGCAGCAAGTGGTGC
GGCGGCCGCCATAGCGGGAAGGCCAACCGCCGCATCATCGGCCGTGTCCG
TGGCGGCAACAAGACGGCGGGGCTCCCGCTCGCGGCAAGGGCAGTGGCTA
GAGGAATTGCGAAGCCCTGACCGGTCACGAGCATCAGAAGACACGACCGG
TGCGCCCAACTGCTGGGGCAGCGACTCCGATGGCATCTCTCTCGGAGACG
CTTCTCGCGGCGGTGGCGGTGGCGGCGGCAGGAGCGGCGGCAGGAGCGGC
ACCGGCGGCAGGAACGGCGGCAGCGGCGACGGTGGCGGTGGTGACGGCGG
CGCCCGCGGTTCCCACCGCGTCCAGCGCGACCGCTCAGAGTCCCCGGCAC
CAGCGCCCGGGGTCCGGCCGCGCAGCCGCAGCGGGAGCCGCGAGCGCGTC
GGCGGCGGCGTGCGGCTACGGTTGTCCAGCCCGGGTGCGGGGCCGCGACT
GAGGTGCAGCAGCGGTAGCGGCAGAGCGGCAGCTGCCGCCAGCGTCGCTA
CCGTCGCCAACTGCGCTTCTGCCGCTCACGCAGCCGTCACCTCGCACCCC
GGGAACTTAAAATCGCACGCATCTGCGTTCGTGTCGACGGACGATACGGA
GGCGCCGCCGCTGGCGGCAACCGCCGCGGCGGCAGGCACCGCGCATCGGC
GGTGCGCCGCCTCTGGAACCGTCGGCGCCGACGCTGCCGGGAGCCCGCAC
AGCGATGCCTCCGGCGCGGCTTCTTCCTCTGGCACGATGGCCGCCGTTGC
CGCCGCCGATGGGACGGCCAACGATGCTTCTTTCGCCGGCACAGCGATGC
AACGGGGCGGGCTGCGCAGCCCGCGGCTGCCGGGAAGCGTCACCGGCGGG
CCCAATATGGGCGCAGCCGCCGCGGCGCGGCAGCGCCCGAGCCTGGCTGC
GATGCAGGGCGGCCCGGTGCGGGCGACCGTCGGCGTCGGTGGG
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