mRNA_P-wetherbeei_contig11395.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11395.1.1
Unique NamemRNA_P-wetherbeei_contig11395.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11395.1.1 vs. uniprot
Match: A0A6H5K2G8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2G8_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 3.070e-41
Identity = 68/130 (52.31%), Postives = 96/130 (73.85%), Query Frame = 1
Query:    1 VVLFDGSCAFCSSGVWLMLEHSKPSAMRFATQSSDIGLSLLGACGLDPDRLSSIALMESNGKLHTRSDAVLQIARRMDFPFPLLAAAAAVVPLPLREAVYGWISENRHTLVAPTDECRIPEEDQMERFLV 390
            VVLFDG C FC+SGVW+M+ +S+   +RF  Q+S++G+SLL + G D +RLSSIA+++ +G L+TRS A++ I  RMDFPFP+ AA    VP PLR+AVYG++S  RH     +  CRIPEE ++ERF++
Sbjct:  106 VVLFDGECNFCNSGVWMMISNSEARNLRFCAQNSEMGVSLLHSFGQDQERLSSIAILDKDGHLYTRSCALVHIMARMDFPFPVGAALLKAVPEPLRDAVYGFVSRRRHMFGTESLSCRIPEESEVERFVL 235          
BLAST of mRNA_P-wetherbeei_contig11395.1.1 vs. uniprot
Match: D7FYZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ6_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.740e-30
Identity = 54/114 (47.37%), Postives = 82/114 (71.93%), Query Frame = 1
Query:   49 LMLEHSKPSAMRFATQSSDIGLSLLGACGLDPDRLSSIALMESNGKLHTRSDAVLQIARRMDFPFPLLAAAAAVVPLPLREAVYGWISENRHTLVAPTDECRIPEEDQMERFLV 390
            +M+ +S+   +RF  Q+S++G+SLL + G D +RLSSIA+++ +G L+TRS A++ I  RMDFPFP+ AA    VP P+R+AVYG++S  RH     +  CRIPEE ++ERF++
Sbjct:    1 MMISNSEARNLRFCAQNSEMGVSLLHSFGQDQERLSSIAILDKDGHLYTRSCALVHIMARMDFPFPVGAALLKAVPEPVRDAVYGFVSRRRHVFGTESLSCRIPEESEVERFVL 114          
BLAST of mRNA_P-wetherbeei_contig11395.1.1 vs. uniprot
Match: A0A836CDU0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDU0_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.280e-28
Identity = 54/114 (47.37%), Postives = 74/114 (64.91%), Query Frame = 1
Query:   52 MLEHSKPSAMRFATQSSDIGLSLLGACGLDPDRLSSIALMESNGKLHTRSDAVLQIARRMDFPFPLLAAAAAVVPLPLREAVYGWISENRHTLVAPTDECRIPEEDQMERFLVD 393
            +L HS    +RFA Q SD GL +L   G++P  L SIA+++ +GKL T+S AVL+IARRM  PFP LA   + +P P R+A+Y W+S  R       D CRIPE+++M RFL +
Sbjct:    1 VLAHSDADKLRFAAQQSDTGLEILKLFGMEPGELRSIAVLQRSGKLLTQSAAVLEIARRMYQPFPALAEVCSAIPEPARDALYAWVSTQRGVF-GHADSCRIPEDEEMARFLTE 113          
BLAST of mRNA_P-wetherbeei_contig11395.1.1 vs. uniprot
Match: A0A4D9CNA7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNA7_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.180e-27
Identity = 61/132 (46.21%), Postives = 83/132 (62.88%), Query Frame = 1
Query:    1 VVLFDGSCAFCSSGVWLML--EHSKPSAMRFATQSSDIGLSLLGACGLDPDRLSSIALMESNGKLHTRSDAVLQIARRMDFPFPLLAAAAAVV-PLPLREAVYGWISENRHTLVAPTDECRIPEEDQMERFL 387
            V+LFDG C FCS  V L +  +     A RFA+   +IG  LL A GLD +  ++I L++ + ++ T SDAVL+IA R+  PFP LA  A V+ P   R+A+Y ++S NRH L    D CRIP E++MERFL
Sbjct:   40 VILFDGDCGFCSDVVNLFINFDGDPRGAFRFASLQGEIGQELLTANGLDTEHFNTIVLVDKD-EVFTSSDAVLEIADRLKEPFPQLARLAKVLLPHVFRDALYSFVSSNRHLLAGEKDSCRIPSENEMERFL 170          
BLAST of mRNA_P-wetherbeei_contig11395.1.1 vs. uniprot
Match: A0A2K3CY30_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CY30_CHLRE)

HSP 1 Score: 103 bits (257), Expect = 8.370e-25
Identity = 53/130 (40.77%), Postives = 76/130 (58.46%), Query Frame = 1
Query:    1 VVLFDGSCAFCSSGVWLMLEHSKPSAMRFATQSSDIGLSLLGACGLDPDRLSSIALMESNGKLHTRSDAVLQIARRMDFPFPLLAAAAAVVPLPLREAVYGWISENRHTLVAPTDECRIPEEDQMERFLV 390
            V+LFDG C  C++GV  ML++      R A   S  G  LL  CG  PD +SSI L+E +   + RS+A+L+I  ++  P PLLAA    VPLPLR+A Y  ++ NR+     TD CR+ +    +RF++
Sbjct:   99 VILFDGVCNLCNNGVNFMLDNDPSGVYRLAALQSPAGRRLLQRCGRSPDDISSIVLVERDSH-YIRSEAILRIGWKLRVPLPLLAAFGFPVPLPLRDAFYDSVANNRYNFFGRTDSCRVDDGRFKDRFII 227          
BLAST of mRNA_P-wetherbeei_contig11395.1.1 vs. uniprot
Match: A0A150GM63_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GM63_GONPE)

HSP 1 Score: 103 bits (256), Expect = 1.180e-24
Identity = 56/132 (42.42%), Postives = 76/132 (57.58%), Query Frame = 1
Query:    1 VVLFDGSCAFCSSGVWLMLEHSKPSAMRFATQSSDIGLSLLGACGLDPDRLSSIALMESNGKLHTRSDAVLQIARRMDFPFPLLAAAAAVVPLPLREAVYGWISENRHTLVAPTDECRIPEEDQM-ERFLVD 393
            V+L+DG C  C+ GV  ML++    A R A   S  G  LL  CG  PD LSSI L+      H RS+A+L+I   +  P PLLAA    VPLPLR+A Y  ++ NR++    TD CR+ +  +  +RF+VD
Sbjct:   98 VILYDGVCGLCNRGVNFMLDNDPGGAFRLAALQSPAGRRLLSRCGRRPDDLSSIVLVTPTAH-HIRSEAILRIGVALRVPLPLLAAFGFPVPLPLRDAFYDAVANNRYSFFGRTDSCRLRDAGKFADRFIVD 228          
BLAST of mRNA_P-wetherbeei_contig11395.1.1 vs. uniprot
Match: A0A061SEC8_9CHLO (Duf393-domain-containing protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SEC8_9CHLO)

HSP 1 Score: 101 bits (251), Expect = 6.130e-24
Identity = 47/121 (38.84%), Postives = 78/121 (64.46%), Query Frame = 1
Query:    1 VVLFDGSCAFCSSGVWLMLEHSKPSAMRFATQSSDIGLSLLGACGLDPDRLSSIALMESNGKLHTRSDAVLQIARRMDFPFPLLAAAAAVVPLPLREAVYGWISENRHTLVAPTDECRIPE 363
            +VLFDG C  C+SGV   L+  K   +R+A   S +G SLL  CG +PD +SSI L++ +   + +S+AVL+I ++++ P P+L   A  +PL  R+AVY +++ NR+++   T+ CR+ +
Sbjct:  101 IVLFDGECNMCNSGVTFCLDWDKVGVLRYAALQSQVGRSLLQRCGREPDDISSIVLVDKD-TCYIKSEAVLRIGQKLEMPLPVLTTFAFPLPLIFRDAVYDFVAANRYSVFGRTNSCRLSD 220          
BLAST of mRNA_P-wetherbeei_contig11395.1.1 vs. uniprot
Match: UPI000BA67397 (thiol-disulfide oxidoreductase DCC family protein n=1 Tax=Terribacillus saccharophilus TaxID=361277 RepID=UPI000BA67397)

HSP 1 Score: 98.2 bits (243), Expect = 9.190e-24
Identity = 50/129 (38.76%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    1 VVLFDGSCAFCSSGVWLMLEHSKPSAMRFATQSSDIGLSLLGACGLDPDRLSSIALMESNGKLHTRSDAVLQIARRMDFPFPLLAAAAAVVPLPLREAVYGWISENRHTLVAPTDECRIPEEDQMERFL 387
            ++LFDG C  C++ V  +++H K +  +FA+  SD G  L  A  + P  + SI L+E NGK++ +S A+L+I+R ++ P+ L AAAA ++P PLR+ +Y ++++NR+      D+C +P  D  ERFL
Sbjct:    6 IILFDGVCNLCNNSVQFIIKHDKAAYFKFASLQSDFGGQLKEAKQI-PGHVDSIILVE-NGKVYMQSSAILRISRHLNGPWKL-AAAALIIPRPLRDGLYRYVAKNRYRWFGRQDQCMLPSPDLKERFL 131          
BLAST of mRNA_P-wetherbeei_contig11395.1.1 vs. uniprot
Match: A0A8J4AQG0_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AQG0_9CHLO)

HSP 1 Score: 100 bits (248), Expect = 2.800e-23
Identity = 54/132 (40.91%), Postives = 76/132 (57.58%), Query Frame = 1
Query:    1 VVLFDGSCAFCSSGVWLMLEHSKPSAMRFATQSSDIGLSLLGACGLDPDRLSSIALMESNGKLHTRSDAVLQIARRMDFPFPLLAAAAAVVPLPLREAVYGWISENRHTLVAPTDECRIPEEDQM-ERFLVD 393
            ++LFDG C  C+ GV  ML++      R A   S  G  LL  CG  P+ +SSI L+E + +   RS+A+L+I   +  P PLLAA    VPLPLR+A Y  I+ NR++    TD CR+ +     +RF+VD
Sbjct:  118 IILFDGVCNLCNGGVNFMLDNDPNGVFRLAALQSQAGRRLLTRCGRSPNDISSIVLVEKD-RHFIRSEAILRIGAALRVPLPLLAALGFPVPLPLRDAFYDAIANNRYSFFGRTDTCRLRDAGNFADRFIVD 248          
BLAST of mRNA_P-wetherbeei_contig11395.1.1 vs. uniprot
Match: UPI00201D7FE8 (thiol-disulfide oxidoreductase DCC family protein n=1 Tax=Paenibacillus sp. PK3_47 TaxID=2072642 RepID=UPI00201D7FE8)

HSP 1 Score: 97.1 bits (240), Expect = 3.240e-23
Identity = 54/129 (41.86%), Postives = 79/129 (61.24%), Query Frame = 1
Query:    1 VVLFDGSCAFCSSGVWLMLEHSKPSAMRFATQSSDIGLSLLGACGLDPDRLSSIALMESNGKLHTRSDAVLQIARRMDFPFPLLAAAAAVVPLPLREAVYGWISENRHTLVAPTDECRIPEEDQMERFL 387
            VVL DG C  C   V  ++     + +RFA   S+ GL L  + GLD  +LS++ L+E NG ++T S AVL+IARR+ FP+PL A    +VP PLR+AVY ++++NR+      ++C +P  D   RFL
Sbjct:   13 VVLIDGVCHLCQGLVRFIIPRDPKARLRFAPLQSETGLRLQQSYGLDSGQLSTVVLLE-NGTVYTESAAVLRIARRLRFPWPL-AYLFILVPGPLRDAVYRYVAKNRYRWFGRDEQCLMPTPDIRRRFL 139          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11395.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2G8_9PHAE3.070e-4152.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYZ6_ECTSI1.740e-3047.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CDU0_9STRA3.280e-2847.37Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A4D9CNA7_9STRA1.180e-2746.21Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2K3CY30_CHLRE8.370e-2540.77Uncharacterized protein n=2 Tax=Chlamydomonas rein... [more]
A0A150GM63_GONPE1.180e-2442.42Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A061SEC8_9CHLO6.130e-2438.84Duf393-domain-containing protein (Fragment) n=1 Ta... [more]
UPI000BA673979.190e-2438.76thiol-disulfide oxidoreductase DCC family protein ... [more]
A0A8J4AQG0_9CHLO2.800e-2340.91Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
UPI00201D7FE83.240e-2341.86thiol-disulfide oxidoreductase DCC family protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11395contigP-wetherbeei_contig11395:150..755 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog3055.EDP03753
PFAMsDUF393
Model size399
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.36e-26
EggNOG OGsCOG3011@1|root,2RY7G@2759|Eukaryota,37TWM@33090|Viridiplantae,34KRF@3041|Chlorophyta
Ec32 ortholog descriptionProtein of unknown function DUF393
Ec32 orthologEc-06_002200.1
DescriptionProtein of unknown function, DUF393
Cds size399
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185909.625283-CDS-P-wetherbeei_contig11395:149..4651683185909.625283-CDS-P-wetherbeei_contig11395:149..465Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11395 150..465 -
1683185909.6347017-CDS-P-wetherbeei_contig11395:672..7551683185909.6347017-CDS-P-wetherbeei_contig11395:672..755Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11395 673..755 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11395.1.1prot_P-wetherbeei_contig11395.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11395 150..755 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11395.1.1

>prot_P-wetherbeei_contig11395.1.1 ID=prot_P-wetherbeei_contig11395.1.1|Name=mRNA_P-wetherbeei_contig11395.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=133bp
VVLFDGSCAFCSSGVWLMLEHSKPSAMRFATQSSDIGLSLLGACGLDPDR
LSSIALMESNGKLHTRSDAVLQIARRMDFPFPLLAAAAAVVPLPLREAVY
GWISENRHTLVAPTDECRIPEEDQMERFLVDP*
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mRNA from alignment at P-wetherbeei_contig11395:150..755-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11395.1.1 ID=mRNA_P-wetherbeei_contig11395.1.1|Name=mRNA_P-wetherbeei_contig11395.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=606bp|location=Sequence derived from alignment at P-wetherbeei_contig11395:150..755- (Phaeothamnion wetherbeei SAG_119_79)
GTCGTTTTATTCGATGGCAGCTGCGCCTTCTGCAGCTCCGGCGTCTGGTT AATGCTGGAGCACAGCAAGCCGTCGGCAATGCGGTGAGTTTCACGTAACG AAGTTTTGAGAAGAATACTTGATTTGCTTTGACTGGTTTGCATCTTTTCT TCTGGTTACCCTGTCGTCAGGTGCTCACTTGGCGATCCTTCTTGCTATGC TTGGCAGTGCGCATAGAAATTACTCATTATTTTTCCTTTGCCACCCTTTT CCGGTGGGAAACTTTAAATGGGCAACCCGCAACAACGCAGGTTCGCGACT CAGAGCAGTGACATCGGCCTGAGCCTGCTCGGCGCCTGCGGACTGGACCC GGACCGGCTGTCCAGCATTGCCCTGATGGAGTCTAACGGAAAGCTCCACA CGCGGTCCGACGCCGTCCTGCAGATCGCCCGCCGGATGGACTTTCCGTTC CCGCTGCTGGCCGCCGCCGCCGCCGTCGTGCCGCTGCCGCTGCGCGAAGC CGTCTACGGCTGGATCTCCGAGAACCGCCACACGCTGGTGGCGCCGACGG ACGAATGCCGTATTCCGGAAGAGGATCAGATGGAGCGGTTCCTCGTTGAC CCGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11395:150..755-

>mRNA_P-wetherbeei_contig11395.1.1 ID=mRNA_P-wetherbeei_contig11395.1.1|Name=mRNA_P-wetherbeei_contig11395.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig11395:150..755- (Phaeothamnion wetherbeei SAG_119_79)
GTCGTTTTATTCGATGGCAGCTGCGCCTTCTGCAGCTCCGGCGTCTGGTT
AATGCTGGAGCACAGCAAGCCGTCGGCAATGCGGTTCGCGACTCAGAGCA
GTGACATCGGCCTGAGCCTGCTCGGCGCCTGCGGACTGGACCCGGACCGG
CTGTCCAGCATTGCCCTGATGGAGTCTAACGGAAAGCTCCACACGCGGTC
CGACGCCGTCCTGCAGATCGCCCGCCGGATGGACTTTCCGTTCCCGCTGC
TGGCCGCCGCCGCCGCCGTCGTGCCGCTGCCGCTGCGCGAAGCCGTCTAC
GGCTGGATCTCCGAGAACCGCCACACGCTGGTGGCGCCGACGGACGAATG
CCGTATTCCGGAAGAGGATCAGATGGAGCGGTTCCTCGTTGACCCGTAG
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